Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005933

Physical Location & Seq

Genomic Coordinates Reverse (-)

30696600 .. 30697465

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAGATATGTTTTAAGGCTCTTTATGACATTACCAATGAAACCAGCTACACTGTGCACAAAAAGCATGGATGGAACCCTATAGAGTCCCTTAAAAAATCGTGGGCAACATTATGCAAAGCGTTCCTACTAGAAGCGCGATGGTTTAGTTGCGGGCACTTGCCAAACACGGAAGAGTACTTGAACAATGGGTTCATCAGTTCAGGGGTGCCTGCGGTTTTAACGCATGGATTCTTCTTACTGGGTCAAGCTATAACCAAGGAAACTGTACATATTCTGGACAACCTCAACATATCTAGCCTTATATCCTCAACCGCAACGATTCTTAGGCTATGGGATGACTTCGGAAGTGCCAAGGATGAGGGCCAAGATGGATATGATGGTTCATACATAAAGTGTTACGTGAATGAAAACCAAGGTTGTTCAGACGAAGATGCACGAGCATTCGTTGTCCATAGGATTTCGGAAGAATGGAAGTTTCTCAACCAAGAATGTTTCTCTGCATCAAATCCATTTTCAGCGTCTTTTACAAAACTTGCTCTCAATGTTGCTAGAATGGTCCCATTGATGTATGATTATAATTCTCAACATCGCCTTCCAAGCCTTGAGGAGAATATGAAGTCGCTGCTTTATGATAGTTTTCTTGCACAACGCCAAGTAACCAGCGCAGCCATTAGCCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

229

Amino Acids

25.75

Weight (kDa)

5.79

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005933)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g30650
rosa_chinensis	RchiOBHm_Chr5g0037521
rosa_laevigata	RLG00000008452 RLG00000008453 RLG00000008456 RLG00000008459 RLG00000008462 RLG00000008465 RLG00000008469 RLG00000008472 RLG00000008475 RLG00000008478 RLG00000008481 RLG00000008484 RLG00000008487 RLG00000008490
rosa_multiflora	Rmu_sc0000365.1_g000040 Rmu_sc0002210.1_g000006 Rmu_sc0002521.1_g000037
rosa_roxburghii	Rroxscaffold_1G00043490 Rroxscaffold_1G00043560 Rroxscaffold_5G00354900 Rroxscaffold_5G00354930
rosa_samantha	Rh4AG159200 Rh4AG159400 Rh4CG170600 Rh5AG254700 Rh5CG290000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	208
AccII	CGCG	1 cut(s)	139
AciI	CCGC	3 cut(s)	153, 215, 315
AfaI	GTAC	2 cut(s)	179, 270
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	2 cut(s)	48, 251
AluI	AGCT	2 cut(s)	48, 251
Alw21I	GWGCWC	1 cut(s)	60
Alw44I	GTGCAC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	364
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	625, 668
AspLEI	GCGC	2 cut(s)	139, 668
AspS9I	GGNCC	2 cut(s)	364, 559
AvaII	GGWCC	1 cut(s)	559
BaeGI	GKGCMC	2 cut(s)	60, 159
BanI	GGYRCC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	612, 680
BccI	CCATC	4 cut(s)	66, 135, 365, 374
BfaI	CTAG	3 cut(s)	131, 297, 552
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	626, 669
BlsI	GCNGC	2 cut(s)	627, 670
BmcAI	AGTACT	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	2 cut(s)	364, 559
BmiI	GGNNCC	3 cut(s)	77, 210, 561
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	424, 512
BmuI	ACTGGG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	626
BsaAI	YACGTR	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	258, 354, 415
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	258, 354, 415
BseGI	GGATG	3 cut(s)	77, 343, 364
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	623
BseSI	GKGCMC	2 cut(s)	60, 159
BseXI	GCAGC	2 cut(s)	612, 680
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	73, 545
BsmFI	GGGAC	2 cut(s)	73, 545
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	366
Bsp1286I	GDGCHC	2 cut(s)	60, 159
Bsp1407I	TGTACA	1 cut(s)	268
BspACI	CCGC	3 cut(s)	153, 215, 315
BspANI	GGCC	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	77, 210, 561
BspT107I	GGYRCC	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	258, 354, 415
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	3 cut(s)	258, 354, 415
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	55, 268
Bst6I	CTCTTC	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	155, 213
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	77, 343, 364
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	2 cut(s)	139, 668
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 600
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	2 cut(s)	60, 159
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	612, 680
BsuRI	GGCC	1 cut(s)	366
BtgZI	GCGATG	2 cut(s)	154, 575
BtsCI	GGATG	3 cut(s)	77, 343, 364
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	155, 213
CfoI	GCGC	2 cut(s)	139, 668
Cfr13I	GGNCC	2 cut(s)	364, 559
CseI	GACGC	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	178, 269
CviAII	CATG	2 cut(s)	68, 227
CviJI	RGCY	9 cut(s)	20, 48, 251, 300, 331, 366, 603, 671, 678
CviKI_1	RGCY	9 cut(s)	20, 48, 251, 300, 331, 366, 603, 671, 678
CviQI	GTAC	2 cut(s)	178, 269
DdeI	CTNAG	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	3 cut(s)	258, 354, 415
Eco47I	GGWCC	1 cut(s)	559
EcoT14I	CCWWGG	3 cut(s)	258, 354, 415
ErhI	CCWWGG	3 cut(s)	258, 354, 415
FaeI	CATG	2 cut(s)	71, 230
FaqI	GGGAC	2 cut(s)	73, 545
FatI	CATG	2 cut(s)	67, 226
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	626, 669
FokI	GGATG	3 cut(s)	84, 350, 371
Fsp4HI	GCNGC	2 cut(s)	626, 669
FspBI	CTAG	3 cut(s)	131, 297, 552
GlaI	GCGC	2 cut(s)	138, 667
GluI	GCNGC	2 cut(s)	626, 669
HaeIII	GGCC	1 cut(s)	366
HgaI	GACGC	1 cut(s)	510
HhaI	GCGC	2 cut(s)	139, 668
Hin1II	CATG	2 cut(s)	71, 230
Hin6I	GCGC	2 cut(s)	137, 666
HinP1I	GCGC	2 cut(s)	137, 666
HinfI	GANTC	3 cut(s)	86, 231, 322
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	3 cut(s)	347, 427, 466
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	2 cut(s)	55, 268
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	5 cut(s)	58, 117, 437, 503, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 600
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	71, 230
HspAI	GCGC	2 cut(s)	137, 666
LpnPI	CCDG	6 cut(s)	58, 189, 225, 227, 263, 676
Lsp1109I	GCAGC	2 cut(s)	612, 680
LweI	GCATC	2 cut(s)	424, 512
MaeI	CTAG	3 cut(s)	131, 297, 552
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	398, 658
MboII	GAAGA	5 cut(s)	16, 185, 226, 443, 479
MhlI	GDGCHC	2 cut(s)	60, 159
MluCI	AATT	1 cut(s)	580
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	296, 319, 355, 601
MseI	TTAA	3 cut(s)	15, 93, 221
Mva1269I	GAATGC	1 cut(s)	443
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	64, 600
NlaIII	CATG	2 cut(s)	71, 230
NlaIV	GGNNCC	3 cut(s)	77, 210, 561
PctI	GAATGC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	231, 322
PkrI	GCNGC	2 cut(s)	627, 670
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	403
PsiI	TTATAA	1 cut(s)	579
PspN4I	GGNNCC	3 cut(s)	77, 210, 561
PspPI	GGNCC	2 cut(s)	364, 559
RsaI	GTAC	2 cut(s)	179, 270
RsaNI	GTAC	2 cut(s)	178, 269
SaqAI	TTAA	3 cut(s)	15, 93, 221
SatI	GCNGC	2 cut(s)	626, 669
Sau96I	GGNCC	2 cut(s)	364, 559
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	60, 159
SetI	ASST	5 cut(s)	50, 253, 288, 405, 421
SfaNI	GCATC	2 cut(s)	424, 512
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	1 cut(s)	580
SsiI	CCGC	3 cut(s)	153, 215, 315
SspMI	CTAG	3 cut(s)	131, 297, 552
StyI	CCWWGG	3 cut(s)	258, 354, 415
TaaI	ACNGT	2 cut(s)	55, 268
TaiI	ACGT	1 cut(s)	405
TasI	AATT	1 cut(s)	580
TatI	WGTACW	2 cut(s)	177, 268
TfiI	GAWTC	2 cut(s)	231, 322
Tru1I	TTAA	3 cut(s)	15, 93, 221
Tru9I	TTAA	3 cut(s)	15, 93, 221
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	2 cut(s)	625, 668
TspDTI	ATGAA	6 cut(s)	17, 54, 184, 375, 423, 632
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	58
VneI	GTGCAC	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	559
XspI	CTAG	3 cut(s)	131, 297, 552
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.