Rh5CG290000

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
31876277 .. 31882323
6047 bp
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UTR
Exon/CDS
Intron
Rh5CG290000.1

Sequence Viewer

Length: 408 bp
ATGACCAAGGAAACCATAGATCTTTTCAACAACATCAACTTACCTAGTATCGTGTCTTCAACGGCCACGATACTTCGGCTGTGGGATGACTTTGGAACTGCCAAGGATGAGGACCAAAATGGGTTTGATGGATCATACATAGAGTGCTACATGAAAGAACACAAAGGCTCTTCTGTTGAAGAGGTGCAAGCATATGTAATCCAAAAGATTTCAGATGAGTGGAAGTGCCTCAACCAAGAATGCTTCTCTGCTTGCAATCCATTTTCAGAGTCCTTTACACAATTCGCTCTCAATATTTCTAGAATGGTTCCCATGATGTACGGTTACAATGCCCATCATTGTCTTCCAAGCCTTGAGGAGAATATGAAGTCGTTGCTTTCGGATAGTTTTGTTGCCAAAGGCATCTAA

Protein Analysis

135

Amino Acids

15.33

Weight (kDa)

4.63

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 2 - 75 8.9e-14 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 7 - 75 1.9e-10 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 3 cut(s) 28, 60, 179
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 112
BarI GAAGNNNNNNTAC 2 cut(s) 40, 72
BbsI GAAGAC 2 cut(s) 48, 335
BccI CCATC 2 cut(s) 122, 342
BceAI ACGGC 1 cut(s) 78
BfaI CTAG 2 cut(s) 45, 300
BglII AGATCT 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 309
BpiI GAAGAC 2 cut(s) 48, 335
BpuEI CTTGAG 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 6, 102
BseDI CCNNGG 2 cut(s) 6, 102
BseGI GGATG 2 cut(s) 91, 112
BseRI GAGGAG 1 cut(s) 371
BshFI GGCC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 19, 131
BspANI GGCC 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 139
BspQI GCTCTTC 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 6, 102
BssMI GATC 2 cut(s) 19, 131
BssT1I CCWWGG 2 cut(s) 6, 102
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 2 cut(s) 174, 175
BstC8I GCNNGC 2 cut(s) 189, 253
BstF5I GGATG 2 cut(s) 91, 112
BstKTI GATC 2 cut(s) 22, 134
BstMBI GATC 2 cut(s) 19, 131
BstV2I GAAGAC 2 cut(s) 48, 335
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 91, 112
Cac8I GCNNGC 2 cut(s) 189, 253
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 151, 313
CviJI RGCY 4 cut(s) 65, 79, 168, 351
CviKI_1 RGCY 4 cut(s) 65, 79, 168, 351
CviQI GTAC 1 cut(s) 319
DpnI GATC 2 cut(s) 21, 133
DpnII GATC 2 cut(s) 19, 131
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 174, 175
EarI CTCTTC 2 cut(s) 174, 175
Eco130I CCWWGG 2 cut(s) 6, 102
Eco47I GGWCC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 6, 102
ErhI CCWWGG 2 cut(s) 6, 102
FaeI CATG 2 cut(s) 154, 316
FaiI YATR 8 cut(s) 17, 136, 140, 152, 193, 195, 314, 365
FatI CATG 2 cut(s) 150, 312
FauNDI CATATG 1 cut(s) 193
FokI GGATG 2 cut(s) 98, 119
FspBI CTAG 2 cut(s) 45, 300
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 2 cut(s) 154, 316
HinfI GANTC 1 cut(s) 269
Hpy188I TCNGA 3 cut(s) 214, 268, 382
Hpy188III TCNNGA 1 cut(s) 300
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 187, 255
Hsp92II CATG 2 cut(s) 154, 316
Kzo9I GATC 2 cut(s) 19, 131
LguI GCTCTTC 1 cut(s) 175
MaeI CTAG 2 cut(s) 45, 300
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 21, 133
MboI GATC 2 cut(s) 19, 131
MboII GAAGA 4 cut(s) 48, 162, 191, 335
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 281
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 4 cut(s) 103, 175, 239, 349
Mva1269I GAATGC 1 cut(s) 245
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 19, 131
NlaIII CATG 2 cut(s) 154, 316
NlaIV GGNNCC 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 175
PctI GAATGC 1 cut(s) 245
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 175
Sau3AI GATC 2 cut(s) 19, 131
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 278
SetI ASST 2 cut(s) 46, 186
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 1 cut(s) 281
SspI AATATT 1 cut(s) 295
SspMI CTAG 2 cut(s) 45, 300
StyI CCWWGG 2 cut(s) 6, 102
TaaI ACNGT 1 cut(s) 323
TasI AATT 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 167, 380
VpaK11BI GGWCC 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 299
XspI CTAG 2 cut(s) 45, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.