Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000365.1

Orthogroup ID

OG0005933

Physical Location & Seq

Genomic Coordinates Reverse (-)

138892 .. 141282

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000365.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgaccaaggaaaccatagatcttttcaacaacatcaacttacctagtatggtgtcttcaacggccacgatacttcggctatgggatgactttggaactgccaaggatgaggaccaaaacgggtttgatggatcatacatagagtgctacatgaaagaacacaaagactcttatgttgaagaggtgcaagcatatgtaatccaaaagatttcagatgagtggaagtgcctcaaccaagaatgcttctctgcttgcaatccattttcagagtcctttacacaattcgctctcaatatttctagaatggttcccatgatgtacgattacaatgcccatcattggaccggtcgccggattccggtcaccggtcgtcggattccggtcaccagtcaccggattcctgtacccggtcgccagattcctgtcaccggtcactggattccggtcaccagtcaccggattccggtcaccggagtccgaggccggccactagtcaccggagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

168

Amino Acids

19.21

Weight (kDa)

6.58

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005933)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g30650
rosa_chinensis	RchiOBHm_Chr5g0037521
rosa_laevigata	RLG00000008452 RLG00000008453 RLG00000008456 RLG00000008459 RLG00000008462 RLG00000008465 RLG00000008469 RLG00000008472 RLG00000008475 RLG00000008478 RLG00000008481 RLG00000008484 RLG00000008487 RLG00000008490
rosa_multiflora	Rmu_sc0000365.1_g000040 Rmu_sc0002210.1_g000006 Rmu_sc0002521.1_g000037
rosa_roxburghii	Rroxscaffold_1G00043490 Rroxscaffold_1G00043560 Rroxscaffold_5G00354900 Rroxscaffold_5G00354930
rosa_samantha	Rh4AG159200 Rh4AG159400 Rh4CG170600 Rh5AG254700 Rh5CG290000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	139
AcoI	YGGCCR	2 cut(s)	63, 485
AfaI	GTAC	2 cut(s)	320, 405
AgeI	ACCGGT	3 cut(s)	344, 365, 428
AgsI	TTSAA	3 cut(s)	28, 60, 179
AhlI	ACTAGT	1 cut(s)	490
AluBI	AGCT	1 cut(s)	503
AluI	AGCT	1 cut(s)	503
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	3 cut(s)	63, 481, 485
AsiGI	ACCGGT	3 cut(s)	344, 365, 428
AspS9I	GGNCC	2 cut(s)	112, 342
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	8 cut(s)	355, 376, 383, 418, 439, 446, 460, 487
AvaII	GGWCC	2 cut(s)	112, 342
BarI	GAAGNNNNNNTAC	2 cut(s)	40, 72
BbsI	GAAGAC	1 cut(s)	48
BccI	CCATC	2 cut(s)	122, 342
BceAI	ACGGC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BcnI	CCSGG	1 cut(s)	408
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	3 cut(s)	45, 300, 491
BglII	AGATCT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	2 cut(s)	112, 342
BmgT120I	GGNCC	2 cut(s)	112, 342
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	6, 102, 478
Bse118I	RCCGGY	4 cut(s)	344, 365, 428, 483
Bse1I	ACTGG	3 cut(s)	387, 440, 450
BseDI	CCNNGG	3 cut(s)	6, 102, 478
BseGI	GGATG	2 cut(s)	91, 112
BseNI	ACTGG	3 cut(s)	387, 440, 450
Bsh1285I	CGRYCG	3 cut(s)	349, 370, 412
BshFI	GGCC	3 cut(s)	65, 483, 487
BshTI	ACCGGT	3 cut(s)	344, 365, 428
BsiEI	CGRYCG	3 cut(s)	349, 370, 412
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	65, 483, 487
Bsp143I	GATC	2 cut(s)	19, 131
BspANI	GGCC	3 cut(s)	65, 483, 487
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	139
BsrFI	RCCGGY	4 cut(s)	344, 365, 428, 483
BsrI	ACTGG	3 cut(s)	387, 440, 450
BssAI	RCCGGY	4 cut(s)	344, 365, 428, 483
BssECI	CCNNGG	3 cut(s)	6, 102, 478
BssMI	GATC	2 cut(s)	19, 131
BssT1I	CCWWGG	2 cut(s)	6, 102
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	189, 253, 485
BstDEI	CTNAG	1 cut(s)	504
BstEII	GGTNACC	4 cut(s)	361, 382, 445, 466
BstF5I	GGATG	2 cut(s)	91, 112
BstKTI	GATC	2 cut(s)	22, 134
BstMBI	GATC	2 cut(s)	19, 131
BstMCI	CGRYCG	3 cut(s)	349, 370, 412
BstPI	GGTNACC	4 cut(s)	361, 382, 445, 466
BstSCI	CCNGG	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	65, 483, 487
BtsCI	GGATG	2 cut(s)	91, 112
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	3 cut(s)	189, 253, 485
Cfr10I	RCCGGY	4 cut(s)	344, 365, 428, 483
Cfr13I	GGNCC	2 cut(s)	112, 342
Csp6I	GTAC	2 cut(s)	319, 404
CspAI	ACCGGT	3 cut(s)	344, 365, 428
CviAII	CATG	2 cut(s)	151, 313
CviJI	RGCY	5 cut(s)	65, 79, 483, 487, 503
CviKI_1	RGCY	5 cut(s)	65, 79, 483, 487, 503
CviQI	GTAC	2 cut(s)	319, 404
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	2 cut(s)	21, 133
DpnII	GATC	2 cut(s)	19, 131
EaeI	YGGCCR	2 cut(s)	63, 485
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	6, 102
Eco47I	GGWCC	2 cut(s)	112, 342
Eco91I	GGTNACC	4 cut(s)	361, 382, 445, 466
EcoO65I	GGTNACC	4 cut(s)	361, 382, 445, 466
EcoT14I	CCWWGG	2 cut(s)	6, 102
ErhI	CCWWGG	2 cut(s)	6, 102
FaeI	CATG	2 cut(s)	154, 316
FatI	CATG	2 cut(s)	150, 312
FauNDI	CATATG	1 cut(s)	193
FokI	GGATG	2 cut(s)	98, 119
FseI	GGCCGGCC	1 cut(s)	487
FspBI	CTAG	3 cut(s)	45, 300, 491
HaeIII	GGCC	3 cut(s)	65, 483, 487
Hin1II	CATG	2 cut(s)	154, 316
HinfI	GANTC	9 cut(s)	167, 269, 355, 376, 397, 418, 439, 460, 474
HphI	GGTGA	8 cut(s)	355, 376, 383, 418, 439, 446, 460, 487
Hpy188I	TCNGA	4 cut(s)	214, 268, 375, 479
Hpy188III	TCNNGA	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	375
HpyCH4V	TGCA	2 cut(s)	187, 255
HpyF3I	CTNAG	1 cut(s)	504
Hsp92II	CATG	2 cut(s)	154, 316
KroI	GCCGGC	1 cut(s)	483
KroNI	GCCGGC	1 cut(s)	485
Kzo9I	GATC	2 cut(s)	19, 131
LmnI	GCTCC	1 cut(s)	500
MaeI	CTAG	3 cut(s)	45, 300, 491
MaeIII	GTNAC	9 cut(s)	361, 382, 389, 424, 431, 445, 452, 466, 493
MalI	GATC	2 cut(s)	21, 133
MboI	GATC	2 cut(s)	19, 131
MboII	GAAGA	2 cut(s)	48, 191
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	1 cut(s)	281
MlyI	GAGTC	3 cut(s)	161, 278, 483
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	103, 175, 239, 473
MroNI	GCCGGC	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	245
NaeI	GCCGGC	1 cut(s)	485
NciI	CCSGG	1 cut(s)	408
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	2 cut(s)	19, 131
NgoMIV	GCCGGC	1 cut(s)	483
NlaIII	CATG	2 cut(s)	154, 316
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	9 cut(s)	361, 382, 389, 424, 431, 445, 452, 466, 493
PctI	GAATGC	1 cut(s)	245
PdiI	GCCGGC	1 cut(s)	485
PfeI	GAWTC	6 cut(s)	355, 376, 397, 418, 439, 460
PinAI	ACCGGT	3 cut(s)	344, 365, 428
PleI	GAGTC	3 cut(s)	161, 277, 482
PpsI	GAGTC	3 cut(s)	161, 277, 482
PspEI	GGTNACC	4 cut(s)	361, 382, 445, 466
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	112, 342
PsuI	RGATCY	1 cut(s)	19
RigI	GGCCGGCC	1 cut(s)	487
RsaI	GTAC	2 cut(s)	320, 405
RsaNI	GTAC	2 cut(s)	319, 404
Sau3AI	GATC	2 cut(s)	19, 131
Sau96I	GGNCC	2 cut(s)	112, 342
SchI	GAGTC	3 cut(s)	161, 278, 483
ScrFI	CCNGG	1 cut(s)	408
SetI	ASST	3 cut(s)	46, 186, 505
SinI	GGWCC	2 cut(s)	112, 342
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	1 cut(s)	281
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	3 cut(s)	45, 300, 491
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	2 cut(s)	6, 102
TasI	AATT	1 cut(s)	281
TfiI	GAWTC	6 cut(s)	355, 376, 397, 418, 439, 460
TscAI	CASTG	1 cut(s)	440
TseFI	GTSAC	9 cut(s)	361, 382, 389, 424, 431, 445, 452, 466, 493
Tsp45I	GTSAC	9 cut(s)	361, 382, 389, 424, 431, 445, 452, 466, 493
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	112, 342
XbaI	TCTAGA	1 cut(s)	299
XspI	CTAG	3 cut(s)	45, 300, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.