Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005933

Physical Location & Seq

Genomic Coordinates Forward (+)

33455754 .. 33456146

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGACCAAGGAAACCATAGATCTTTTCAACAACATCAACTTACCTAGTATGGTGTCTTCAACGGCCACGATACTTCGGCTATGGGATGACTTTGGAACTGCCAAGGATGAGGACCAAAACGGGTTTGATGGATCATACATAGAGTGCTACATGAAAGAACACAAAGACTCTTCGTTGAAGAGGTGCAAGCATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

65

Amino Acids

7.52

Weight (kDa)

5.13

Isoelectric Point (pI)

67.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	2 - 61	3.2e-11	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	7 - 55	4.2e-08	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005933)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g30650
rosa_chinensis	RchiOBHm_Chr5g0037521
rosa_laevigata	RLG00000008452 RLG00000008453 RLG00000008456 RLG00000008459 RLG00000008462 RLG00000008465 RLG00000008469 RLG00000008472 RLG00000008475 RLG00000008478 RLG00000008481 RLG00000008484 RLG00000008487 RLG00000008490
rosa_multiflora	Rmu_sc0000365.1_g000040 Rmu_sc0002210.1_g000006 Rmu_sc0002521.1_g000037
rosa_roxburghii	Rroxscaffold_1G00043490 Rroxscaffold_1G00043560 Rroxscaffold_5G00354900 Rroxscaffold_5G00354930
rosa_samantha	Rh4AG159200 Rh4AG159400 Rh4CG170600 Rh5AG254700 Rh5CG290000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	139
AcoI	YGGCCR	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	28, 60, 178
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	112
BarI	GAAGNNNNNNTAC	2 cut(s)	40, 72
BbsI	GAAGAC	1 cut(s)	48
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	6, 102
BseDI	CCNNGG	2 cut(s)	6, 102
BseGI	GGATG	2 cut(s)	91, 112
BshFI	GGCC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	19, 131
BspANI	GGCC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	6, 102
BssMI	GATC	2 cut(s)	19, 131
BssT1I	CCWWGG	2 cut(s)	6, 102
Bst6I	CTCTTC	2 cut(s)	173, 175
BstC8I	GCNNGC	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	91, 112
BstKTI	GATC	2 cut(s)	22, 134
BstMBI	GATC	2 cut(s)	19, 131
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	91, 112
Cac8I	GCNNGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	112
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	2 cut(s)	65, 79
CviKI_1	RGCY	2 cut(s)	65, 79
DpnI	GATC	2 cut(s)	21, 133
DpnII	GATC	2 cut(s)	19, 131
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	173, 175
EarI	CTCTTC	2 cut(s)	173, 175
Eco130I	CCWWGG	2 cut(s)	6, 102
Eco47I	GGWCC	1 cut(s)	112
EcoT14I	CCWWGG	2 cut(s)	6, 102
ErhI	CCWWGG	2 cut(s)	6, 102
FaeI	CATG	1 cut(s)	154
FaiI	YATR	8 cut(s)	17, 50, 82, 136, 140, 152, 192, 194
FatI	CATG	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	192
FokI	GGATG	2 cut(s)	98, 119
FspBI	CTAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	19, 131
MaeI	CTAG	1 cut(s)	45
MalI	GATC	2 cut(s)	21, 133
MboI	GATC	2 cut(s)	19, 131
MboII	GAAGA	3 cut(s)	48, 162, 190
MflI	RGATCY	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	2 cut(s)	103, 174
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	2 cut(s)	19, 131
NlaIII	CATG	1 cut(s)	154
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	19
Sau3AI	GATC	2 cut(s)	19, 131
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	161
SetI	ASST	2 cut(s)	46, 185
SgeI	CNNG	6 cut(s)	19, 57, 79, 115, 133, 163
SinI	GGWCC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	6, 102
TspDTI	ATGAA	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	112
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.