Rh4CG170600

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
37355865 .. 37356436
572 bp
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UTR
Exon/CDS
Intron
Rh4CG170600.1

Sequence Viewer

Length: 378 bp
ATGGTGTCTTCAACGGCCACGATACTTCGGCTATGGGATGACTTTGGAACTGCCAAGGATGAGGACCAAAACGGGTTTGATGGATCATACATAGAGTGCTACATGAAAGAACACAAAGACTCTTCTGTTGAAGAGGTGCAAGCATATGTAATCCAAAAGATTTCAGATGAGTGGAAGTGCCTCAACCAAGAATGCTTCTCTGCTTGCAATCCATTTTCAGAGTCCTTTACACAATTCGCTCTCAATATTTCTAGAATGGTTCCCATGATGTACGATTACAATGCCCATCATTGTCTTCCAAGCCTTGAGGAGAATATGAAGTCGTTGCTTTCGGATAGTTTTCTTGCCAAAGGCATCTACGGGAAACCCATGCAGTAG

Protein Analysis

125

Amino Acids

14.35

Weight (kDa)

4.61

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 59 7.5e-12 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 1 - 59 2.2e-08 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 15
AfaI GTAC 1 cut(s) 272
AgsI TTSAA 2 cut(s) 12, 131
AlwI GGATC 1 cut(s) 91
AoxI GGCC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 287
BccI CCATC 2 cut(s) 74, 294
BceAI ACGGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BfaI CTAG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 261
BmsI GCATC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 43, 64
BseRI GAGGAG 1 cut(s) 323
BshFI GGCC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 83
BspANI GGCC 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 54
Bst6I CTCTTC 2 cut(s) 126, 127
BstC8I GCNNGC 2 cut(s) 141, 205
BstF5I GGATG 2 cut(s) 43, 64
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 2 cut(s) 43, 64
Cac8I GCNNGC 2 cut(s) 141, 205
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 271
CviAII CATG 3 cut(s) 103, 265, 370
CviJI RGCY 3 cut(s) 17, 31, 303
CviKI_1 RGCY 3 cut(s) 17, 31, 303
CviQI GTAC 1 cut(s) 271
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 126, 127
EarI CTCTTC 2 cut(s) 126, 127
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 3 cut(s) 106, 268, 373
FaiI YATR 9 cut(s) 34, 88, 92, 104, 145, 147, 266, 317, 371
FatI CATG 3 cut(s) 102, 264, 369
FauNDI CATATG 1 cut(s) 145
FokI GGATG 2 cut(s) 50, 71
FspBI CTAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 17
Hin1II CATG 3 cut(s) 106, 268, 373
HinfI GANTC 2 cut(s) 119, 221
Hpy188I TCNGA 3 cut(s) 166, 220, 334
Hpy188III TCNNGA 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 139, 207, 373
Hsp92II CATG 3 cut(s) 106, 268, 373
Kzo9I GATC 1 cut(s) 83
LweI GCATC 1 cut(s) 363
MaeI CTAG 1 cut(s) 252
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 3 cut(s) 114, 143, 287
MluCI AATT 1 cut(s) 233
MlyI GAGTC 2 cut(s) 113, 230
MnlI CCTC 4 cut(s) 55, 127, 191, 301
Mva1269I GAATGC 1 cut(s) 197
NdeI CATATG 1 cut(s) 145
NdeII GATC 1 cut(s) 83
NlaIII CATG 3 cut(s) 106, 268, 373
NlaIV GGNNCC 1 cut(s) 261
PctI GAATGC 1 cut(s) 197
PleI GAGTC 2 cut(s) 113, 229
PpsI GAGTC 2 cut(s) 113, 229
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 64
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
Sau3AI GATC 1 cut(s) 83
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 2 cut(s) 113, 230
SetI ASST 1 cut(s) 138
SfaNI GCATC 1 cut(s) 363
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 233
SspI AATATT 1 cut(s) 247
SspMI CTAG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 54
TasI AATT 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 119, 332
VpaK11BI GGWCC 1 cut(s) 64
XbaI TCTAGA 1 cut(s) 251
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.