Rroxscaffold_1G00043560

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
62174804 .. 62175309
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043560.1

Sequence Viewer

Length: 393 bp
ATGGGGAGTTGCCTAACTCGGAGACTACTTGAAGAATGGGATTATCGGTTCGGGGTGCCTGCATTTTTAACCCACGCCTTCTTTATTCTTGGTCAAGGTATGACCAAGGAAACCATAGATCTTTTCAACAACATCAACTTACCTAGTATCGTGTCTTCAACGGCCACGATACTTCCGCTATGGGATGACTTTGGAACTGCCAAGGATGAGTACCAAAATGGGTTTGATGGATCATACATAGAGTGCTACATGAAAGAACACAAAGGCTCTTCTGTTGAAGAGGTGCAAGCATATGTAATCCAAAAGATTTCGGATGAGTGGAAGTGCCTCAACCAAGAATGCTTCTCTCGCTTGGAATCCATTTTCGCAGTCCTTTACACAATTCGCTCTTAA

Protein Analysis

130

Amino Acids

14.97

Weight (kDa)

4.72

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 16 - 108 3e-16 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 17 - 108 1.8e-13 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 162
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 4 cut(s) 32, 127, 159, 278
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 238
AoxI GGCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 55
BarI GAAGNNNNNNTAC 2 cut(s) 139, 171
BbsI GAAGAC 1 cut(s) 147
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 144
BglII AGATCT 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 105, 201
BseDI CCNNGG 2 cut(s) 105, 201
BseGI GGATG 3 cut(s) 190, 211, 319
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 118, 230
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 105, 201
BssMI GATC 2 cut(s) 118, 230
BssT1I CCWWGG 2 cut(s) 105, 201
Bst6I CTCTTC 2 cut(s) 273, 274
BstC8I GCNNGC 2 cut(s) 60, 288
BstF5I GGATG 3 cut(s) 190, 211, 319
BstKTI GATC 2 cut(s) 121, 233
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 2 cut(s) 118, 230
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 3 cut(s) 190, 211, 319
Cac8I GCNNGC 2 cut(s) 60, 288
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 250
CviJI RGCY 2 cut(s) 164, 267
CviKI_1 RGCY 2 cut(s) 164, 267
CviQI GTAC 1 cut(s) 211
DpnI GATC 2 cut(s) 120, 232
DpnII GATC 2 cut(s) 118, 230
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 273, 274
EarI CTCTTC 2 cut(s) 273, 274
Eco130I CCWWGG 2 cut(s) 105, 201
EcoT14I CCWWGG 2 cut(s) 105, 201
ErhI CCWWGG 2 cut(s) 105, 201
FaeI CATG 1 cut(s) 253
FaiI YATR 8 cut(s) 101, 116, 181, 235, 239, 251, 292, 294
FatI CATG 1 cut(s) 249
FauNDI CATATG 1 cut(s) 292
FokI GGATG 3 cut(s) 197, 218, 326
FspBI CTAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 1 cut(s) 253
HinfI GANTC 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 21, 313
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 62, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
Hsp92II CATG 1 cut(s) 253
Kzo9I GATC 2 cut(s) 118, 230
LguI GCTCTTC 1 cut(s) 274
LpnPI CCDG 1 cut(s) 72
MaeI CTAG 1 cut(s) 144
MalI GATC 2 cut(s) 120, 232
MboI GATC 2 cut(s) 118, 230
MboII GAAGA 4 cut(s) 44, 147, 261, 290
MflI RGATCY 1 cut(s) 118
MluCI AATT 1 cut(s) 381
MnlI CCTC 2 cut(s) 274, 338
MseI TTAA 2 cut(s) 68, 391
Mva1269I GAATGC 1 cut(s) 344
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeI CATATG 1 cut(s) 292
NdeII GATC 2 cut(s) 118, 230
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 274
PctI GAATGC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 2 cut(s) 68, 391
Sau3AI GATC 2 cut(s) 118, 230
SetI ASST 3 cut(s) 100, 145, 285
Sse9I AATT 1 cut(s) 381
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 105, 201
TasI AATT 1 cut(s) 381
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 68, 391
Tru9I TTAA 2 cut(s) 68, 391
TspDTI ATGAA 1 cut(s) 266
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.