Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002210.1

Orthogroup ID

OG0005933

Physical Location & Seq

Genomic Coordinates Reverse (-)

42489 .. 44515

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002210.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgaaagaggttgtgccatatggggaggatggaggcagagcgatgtgcggctctgtcaaatttgggtatagaaaggtgatggcatttagattgaagagagaagaaagagttgcgagagacgaggagcaaaatgggtatgatggatcatacgtgcagtgctatatggaagaacatccaggctctttggtcgaagaagcgcaagcatatgtaatccgaaagatttcggatgaatggaagtacctcaaccaagaatgcttctcttgcaatccattttcagagtcctttacacaactcgctctcaatgtttctagaatggttcccatgatgtacgattacaatgcccatcatcgtcttccaagccttgaggagaatatgaagtcgttgcttttggatagttttctttccaaaggcatcactcatggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

141

Amino Acids

16.33

Weight (kDa)

5.59

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005933)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g30650
rosa_chinensis	RchiOBHm_Chr5g0037521
rosa_laevigata	RLG00000008452 RLG00000008453 RLG00000008456 RLG00000008459 RLG00000008462 RLG00000008465 RLG00000008469 RLG00000008472 RLG00000008475 RLG00000008478 RLG00000008481 RLG00000008484 RLG00000008487 RLG00000008490
rosa_multiflora	Rmu_sc0000365.1_g000040 Rmu_sc0002210.1_g000006 Rmu_sc0002521.1_g000037
rosa_roxburghii	Rroxscaffold_1G00043490 Rroxscaffold_1G00043560 Rroxscaffold_5G00354900 Rroxscaffold_5G00354930
rosa_samantha	Rh4AG159200 Rh4AG159400 Rh4CG170600 Rh5AG254700 Rh5CG290000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	59
AfaI	GTAC	2 cut(s)	239, 329
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	344
BccI	CCATC	4 cut(s)	23, 73, 134, 351
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	309, 424
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	177
BseGI	GGATG	3 cut(s)	34, 172, 232
BseRI	GAGGAG	2 cut(s)	137, 380
BsgI	GTGCAG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	151
BssMI	GATC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	34, 172, 232
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	344
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	34, 172, 232
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	238, 328
CviAII	CATG	2 cut(s)	322, 419
CviJI	RGCY	4 cut(s)	51, 180, 360, 423
CviKI_1	RGCY	4 cut(s)	51, 180, 360, 423
CviQI	GTAC	2 cut(s)	238, 328
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	2 cut(s)	325, 422
FatI	CATG	2 cut(s)	321, 418
FauNDI	CATATG	2 cut(s)	19, 205
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	3 cut(s)	41, 159, 239
Fsp4HI	GCNGC	1 cut(s)	49
FspBI	CTAG	2 cut(s)	309, 424
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	325, 422
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	1 cut(s)	278
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	215, 226, 277
Hpy188III	TCNNGA	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	154, 264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	325, 422
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	2 cut(s)	162, 189
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	2 cut(s)	309, 424
MaeII	ACGT	1 cut(s)	150
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	5 cut(s)	106, 113, 179, 203, 344
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	19, 26, 115, 251, 358
MroXI	GAANNNNTTC	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	261
NdeI	CATATG	2 cut(s)	19, 205
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	325, 422
NlaIV	GGNNCC	1 cut(s)	318
PctI	GAATGC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	318
RsaI	GTAC	2 cut(s)	239, 329
RsaNI	GTAC	2 cut(s)	238, 328
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	4 cut(s)	12, 78, 153, 243
SfaNI	GCATC	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	2 cut(s)	309, 424
StyD4I	CCNGG	1 cut(s)	175
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	59
TauI	GCSGC	1 cut(s)	51
TscAI	CASTG	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	17, 243, 389
TspRI	CASTG	1 cut(s)	161
XapI	RAATTY	1 cut(s)	59
XbaI	TCTAGA	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	2 cut(s)	309, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.