Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005933

Physical Location & Seq

Genomic Coordinates Forward (+)

33004503 .. 33021437

Gene Structure 16935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG254700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACTCTAGCTTATTTATCTCCCGACTCCCGACTTGAATTTTTACTTACCATTACTCAATGGCGTCCATTCTTCAAGCTCACTCTGCTTCCTCAAAGTCTGAGATCGCGTGGGGAGTTGCCAAACTCCGGAGATTACTTGAAGAATGGGATTATCAGTTCAGGGGTGCCTTCATTTTTAACCCACGCCTTCTGTATTATTGGTCAAGGTATGATCAAGGAAACCATAGATCTTTTCAACAACATCAACTTACCTAGTATCGTGTCTTCAACGGCCACGATACTTCGGCTATGGGATGACTTTGGAACTGCCAAGGATGAGGACCAAAATGGGTTTGATGGATCATACATAGAGTGCTACATGAAAGAACACAAAGGCTCTTCTGTTGAAGAGGTGCAAGCATATGTAATCCAAAAGATTTCAGATGAGTGGAAGCGCCTCAACCAAGAATGCTTCTCTGCTTGCAATCCATTTTCAGAGTCCTTTACACAATTCGCTCTGAATATTTCTAGAATGGTTCCCATGATGTACGATTACAATGCCCATCATTGTCTTCCAAGCCTTGAGGAGAATATGAAGTCGTTGCTTTCGGATAGTTTTCTTGCCAAAGGCATCTACGGGAAACCCATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

211

Amino Acids

23.97

Weight (kDa)

5.22

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_syn_C_2	PF19086	18 - 146	1.1e-19	Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C	PF03936	20 - 145	3e-24	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005933)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g30650
rosa_chinensis	RchiOBHm_Chr5g0037521
rosa_laevigata	RLG00000008452 RLG00000008453 RLG00000008456 RLG00000008459 RLG00000008462 RLG00000008465 RLG00000008469 RLG00000008472 RLG00000008475 RLG00000008478 RLG00000008481 RLG00000008484 RLG00000008487 RLG00000008490
rosa_multiflora	Rmu_sc0000365.1_g000040 Rmu_sc0002210.1_g000006 Rmu_sc0002521.1_g000037
rosa_roxburghii	Rroxscaffold_1G00043490 Rroxscaffold_1G00043560 Rroxscaffold_5G00354900 Rroxscaffold_5G00354930
rosa_samantha	Rh4AG159200 Rh4AG159400 Rh4CG170600 Rh5AG254700 Rh5CG290000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	128
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	6 cut(s)	38, 76, 142, 238, 270, 389
AloI	GAACNNNNNNTCC	2 cut(s)	142, 174
AluBI	AGCT	2 cut(s)	11, 79
AluI	AGCT	2 cut(s)	11, 79
AlwI	GGATC	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
BbsI	GAAGAC	2 cut(s)	258, 545
BccI	CCATC	2 cut(s)	332, 552
BceAI	ACGGC	1 cut(s)	288
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BclI	TGATCA	1 cut(s)	213
BfaI	CTAG	3 cut(s)	8, 255, 510
BfoI	RGCGCY	1 cut(s)	439
BglII	AGATCT	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	168, 519
BmsI	GCATC	1 cut(s)	621
BpiI	GAAGAC	2 cut(s)	258, 545
BpuEI	CTTGAG	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	301, 322
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	104, 213, 229, 341
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	168, 519
BspPI	GGATC	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	4 cut(s)	104, 213, 229, 341
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	312
Bst6I	CTCTTC	2 cut(s)	384, 385
BstACI	GRCGYC	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	399, 463
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	301, 322
BstFNI	CGCG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	4 cut(s)	107, 216, 232, 344
BstMBI	GATC	4 cut(s)	104, 213, 229, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstUI	CGCG	1 cut(s)	109
BstV2I	GAAGAC	2 cut(s)	258, 545
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	301, 322
Cac8I	GCNNGC	2 cut(s)	399, 463
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	3 cut(s)	361, 523, 628
CviJI	RGCY	6 cut(s)	11, 79, 275, 289, 378, 561
CviKI_1	RGCY	6 cut(s)	11, 79, 275, 289, 378, 561
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	4 cut(s)	106, 215, 231, 343
DpnII	GATC	4 cut(s)	104, 213, 229, 341
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	384, 385
EarI	CTCTTC	2 cut(s)	384, 385
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	364, 526, 631
FatI	CATG	3 cut(s)	360, 522, 627
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	213
FokI	GGATG	2 cut(s)	308, 329
FspBI	CTAG	3 cut(s)	8, 255, 510
GlaI	GCGC	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	438
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	364, 526, 631
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	4, 26, 479
HpaII	CCGG	1 cut(s)	129
Hpy188I	TCNGA	5 cut(s)	102, 424, 478, 501, 592
Hpy188III	TCNNGA	4 cut(s)	23, 30, 129, 510
HpyAV	CCTTC	2 cut(s)	180, 199
HpyCH4V	TGCA	3 cut(s)	397, 465, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	3 cut(s)	364, 526, 631
HspAI	GCGC	1 cut(s)	436
Kpn2I	TCCGGA	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	4 cut(s)	104, 213, 229, 341
LguI	GCTCTTC	1 cut(s)	385
LpnPI	CCDG	2 cut(s)	142, 147
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	3 cut(s)	8, 255, 510
MalI	GATC	4 cut(s)	106, 215, 231, 343
MboI	GATC	4 cut(s)	104, 213, 229, 341
MboII	GAAGA	6 cut(s)	64, 154, 258, 372, 401, 545
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	2 cut(s)	38, 491
MlyI	GAGTC	2 cut(s)	20, 488
MnlI	CCTC	5 cut(s)	102, 313, 385, 449, 559
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	1 cut(s)	179
MspI	CCGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	455
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	4 cut(s)	104, 213, 229, 341
NlaIII	CATG	3 cut(s)	364, 526, 631
NlaIV	GGNNCC	2 cut(s)	168, 519
PciSI	GCTCTTC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	455
PleI	GAGTC	2 cut(s)	20, 487
PpsI	GAGTC	2 cut(s)	20, 487
PspN4I	GGNNCC	2 cut(s)	168, 519
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SapI	GCTCTTC	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	179
Sau3AI	GATC	4 cut(s)	104, 213, 229, 341
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	2 cut(s)	20, 488
SetI	ASST	5 cut(s)	13, 81, 211, 256, 396
SfaNI	GCATC	1 cut(s)	621
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	2 cut(s)	38, 491
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	3 cut(s)	8, 255, 510
StyI	CCWWGG	1 cut(s)	312
TasI	AATT	2 cut(s)	38, 491
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	162, 377, 590
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	509
XspI	CTAG	3 cut(s)	8, 255, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.