Rroxscaffold_1G00043490

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
62005055 .. 62010823
5769 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00043490.1

Sequence Viewer

Length: 153 bp
ATGGAGGTGGTCGAAAAGTTACCTAGAAGCCACGGTTTGGCGGATTTTTCCGAGAATCCGGTGAGAGCTCCGTTCGACGATGAGTACCAAAATGAGTTTGATGGATCATACATAGAGTGCTACATGAAAGAACACAAAGGCTCTTCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.84

Weight (kDa)

4.74

Isoelectric Point (pI)

69.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 37
AciI CCGC 1 cut(s) 41
AclWI GGATC 1 cut(s) 112
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 73
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 70
BccI CCATC 1 cut(s) 95
BfaI CTAG 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 1 cut(s) 41
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 148
BstDSI CCRYGG 1 cut(s) 31
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BtgI CCRYGG 1 cut(s) 31
Csp6I GTAC 1 cut(s) 85
CviAII CATG 1 cut(s) 124
CviJI RGCY 3 cut(s) 30, 68, 141
CviKI_1 RGCY 3 cut(s) 30, 68, 141
CviQI GTAC 1 cut(s) 85
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 1 cut(s) 127
FaiI YATR 3 cut(s) 109, 113, 125
FatI CATG 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 70
FspBI CTAG 1 cut(s) 24
HapII CCGG 1 cut(s) 59
Hin1II CATG 1 cut(s) 127
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 35
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 104
LguI GCTCTTC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 1 cut(s) 72
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 18
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 70
MspI CCGG 1 cut(s) 59
NdeII GATC 1 cut(s) 104
NlaIII CATG 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 70
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SacI GAGCTC 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 70
SetI ASST 3 cut(s) 9, 25, 70
SgeI CNNG 5 cut(s) 36, 44, 64, 71, 136
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 70
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 12, 75
TfiI GAWTC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 60
Van91I CCANNNNNTGG 1 cut(s) 37
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.