Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002521.1

Orthogroup ID

OG0005933

Physical Location & Seq

Genomic Coordinates Reverse (-)

130719 .. 132556

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002521.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgctgacgtgggctgttgactggacgctgacgtggatgggctctgagctgacgtcagtggacttcaggctgcttcttcgtttctgggctgagtctgggttgactaaagcaggggctgggataatctggaagggttgtcggcggttcaagatggaacaacttctagttgccggtttgagggccttttggccaattccgggaataagttttccggttccggcaatctgggatcaggttgcagcttctggtggagtatggctgcaggaggctggggggaaggctttgaacatggcagagggactttcgctacttccggtggccggttcgtggataagattgtgtaaggcattcttagtagaaacacaatggtttaggcgtggggagttgccaaactccggagattacttgaagaatgggattatcagttcaggggtgccttcatttttaacccacgccttctgtattattggtcaaggtatgatcaaggaaaccatagatcttttcaacaacatcaacttacctagtatcgtgtcttcaacggccacgatacttcggctatgggatgactttggaactgccaaggatgaggaccaaaatgggtttgatggatcatacatagagtgctacatgaaagaacacagaggctcttctgttgaagaggtgcaagcacatgtaatccaaaagatttcagatgagtggaagcgcctcaaccaagaatgcttctctgcttgcaatccattttcagagtcctttacacaattcgctctcaatatttctagaatggttcccatgatgtacgattacaatgcccatcattgtcttccaagccttgaggagaatatgaagtcgttgctttcggatagttttcttgccgaaggcatctactggaaacccatgcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

300

Amino Acids

33.77

Weight (kDa)

5.32

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005933)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g30650
rosa_chinensis	RchiOBHm_Chr5g0037521
rosa_laevigata	RLG00000008452 RLG00000008453 RLG00000008456 RLG00000008459 RLG00000008462 RLG00000008465 RLG00000008469 RLG00000008472 RLG00000008475 RLG00000008478 RLG00000008481 RLG00000008484 RLG00000008487 RLG00000008490
rosa_multiflora	Rmu_sc0000365.1_g000040 Rmu_sc0002210.1_g000006 Rmu_sc0002521.1_g000037
rosa_roxburghii	Rroxscaffold_1G00043490 Rroxscaffold_1G00043560 Rroxscaffold_5G00354900 Rroxscaffold_5G00354930
rosa_samantha	Rh4AG159200 Rh4AG159400 Rh4CG170600 Rh5AG254700 Rh5CG290000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	433
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	2 cut(s)	237, 616
AcoI	YGGCCR	3 cut(s)	188, 318, 540
AcuI	CTGAAG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	797
AfiI	CCNNNNNNNGG	5 cut(s)	177, 197, 320, 327, 395
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	6 cut(s)	148, 286, 409, 505, 537, 656
AjiI	CACGTC	2 cut(s)	9, 33
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
AluBI	AGCT	2 cut(s)	49, 242
AluI	AGCT	2 cut(s)	49, 242
AlwI	GGATC	2 cut(s)	237, 616
AlwNI	CAGNNNCTG	2 cut(s)	116, 245
Aor13HI	TCCGGA	1 cut(s)	395
AoxI	GGCC	4 cut(s)	180, 188, 318, 540
ApeKI	GCWGC	3 cut(s)	70, 239, 259
Asp700I	GAANNNNTTC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	2 cut(s)	180, 589
AsuC2I	CCSGG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	517, 549
BbsI	GAAGAC	2 cut(s)	525, 812
BbvI	GCAGC	3 cut(s)	57, 246, 251
BccI	CCATC	4 cut(s)	31, 145, 599, 819
BceAI	ACGGC	1 cut(s)	555
BcgI	CGANNNNNNTGC	2 cut(s)	788, 822
BclI	TGATCA	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	3 cut(s)	164, 522, 777
BfmI	CTRYAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	706
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	3 cut(s)	71, 240, 260
BlsI	GCNGC	3 cut(s)	72, 241, 261
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	589
BmgBI	CACGTC	2 cut(s)	9, 33
BmgT120I	GGNCC	2 cut(s)	180, 589
BmiI	GGNNCC	3 cut(s)	216, 435, 786
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	888
BpiI	GAAGAC	2 cut(s)	525, 812
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	579
BsaWI	WCCGGW	3 cut(s)	211, 313, 395
Bsc4I	CCNNNNNNNGG	5 cut(s)	177, 197, 320, 327, 395
Bse118I	RCCGGY	2 cut(s)	170, 320
Bse1I	ACTGG	2 cut(s)	26, 890
BseAI	TCCGGA	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	3 cut(s)	42, 568, 589
BseLI	CCNNNNNNNGG	5 cut(s)	177, 197, 320, 327, 395
BseMII	CTCAG	2 cut(s)	36, 81
BseNI	ACTGG	2 cut(s)	26, 890
BseRI	GAGGAG	1 cut(s)	848
BseXI	GCAGC	3 cut(s)	57, 246, 251
BseYI	CCCAGC	2 cut(s)	116, 269
BshFI	GGCC	4 cut(s)	182, 190, 320, 542
BshNI	GGYRCC	1 cut(s)	433
BsiSI	CCGG	7 cut(s)	171, 197, 212, 218, 314, 321, 396
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	5 cut(s)	177, 197, 320, 327, 395
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	2 cut(s)	347, 722
BsnI	GGCC	4 cut(s)	182, 190, 320, 542
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	229, 480, 496, 608
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	4 cut(s)	182, 190, 320, 542
BspCNI	CTCAG	2 cut(s)	37, 82
BspEI	TCCGGA	1 cut(s)	395
BspLI	GGNNCC	3 cut(s)	216, 435, 786
BspMAI	CTGCAG	1 cut(s)	264
BspPI	GGATC	2 cut(s)	237, 616
BspQI	GCTCTTC	1 cut(s)	652
BspT107I	GGYRCC	1 cut(s)	433
BsrFI	RCCGGY	2 cut(s)	170, 320
BsrI	ACTGG	2 cut(s)	26, 890
BssAI	RCCGGY	2 cut(s)	170, 320
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	4 cut(s)	229, 480, 496, 608
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	579
Bst6I	CTCTTC	2 cut(s)	651, 652
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	666, 730
BstDEI	CTNAG	3 cut(s)	45, 90, 352
BstF5I	GGATG	3 cut(s)	42, 568, 589
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	4 cut(s)	232, 483, 499, 611
BstMBI	GATC	4 cut(s)	229, 480, 496, 608
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	57, 246, 251
BstV2I	GAAGAC	2 cut(s)	525, 812
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	4 cut(s)	182, 190, 320, 542
BtrI	CACGTC	2 cut(s)	9, 33
BtsCI	GGATG	3 cut(s)	42, 568, 589
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	666, 730
CaiI	CAGNNNCTG	2 cut(s)	116, 245
CfoI	GCGC	1 cut(s)	705
Cfr10I	RCCGGY	2 cut(s)	170, 320
Cfr13I	GGNCC	2 cut(s)	180, 589
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	796
CviAII	CATG	5 cut(s)	289, 628, 671, 790, 895
CviQI	GTAC	1 cut(s)	796
DdeI	CTNAG	3 cut(s)	45, 90, 352
DpnI	GATC	4 cut(s)	231, 482, 498, 610
DpnII	GATC	4 cut(s)	229, 480, 496, 608
EaeI	YGGCCR	3 cut(s)	188, 318, 540
Eam1104I	CTCTTC	2 cut(s)	651, 652
EarI	CTCTTC	2 cut(s)	651, 652
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	5 cut(s)	292, 631, 674, 793, 898
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	5 cut(s)	288, 627, 670, 789, 894
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	3 cut(s)	71, 240, 260
FokI	GGATG	3 cut(s)	49, 575, 596
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	71, 240, 260
FspBI	CTAG	3 cut(s)	164, 522, 777
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	3 cut(s)	71, 240, 260
GsaI	CCCAGC	2 cut(s)	120, 273
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	4 cut(s)	182, 190, 320, 542
HapII	CCGG	7 cut(s)	171, 197, 212, 218, 314, 321, 396
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	705
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	5 cut(s)	292, 631, 674, 793, 898
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HincII	GTYRAC	2 cut(s)	19, 102
HindII	GTYRAC	2 cut(s)	19, 102
HinfI	GANTC	2 cut(s)	92, 746
HpaII	CCGG	7 cut(s)	171, 197, 212, 218, 314, 321, 396
Hpy166II	GTNNAC	3 cut(s)	19, 61, 102
Hpy188I	TCNGA	4 cut(s)	46, 691, 745, 859
Hpy188III	TCNNGA	4 cut(s)	127, 148, 396, 777
Hpy8I	GTNNAC	3 cut(s)	19, 61, 102
HpyAV	CCTTC	5 cut(s)	124, 271, 447, 466, 869
HpyCH4IV	ACGT	3 cut(s)	8, 32, 53
HpyCH4V	TGCA	5 cut(s)	239, 262, 664, 732, 898
HpyF3I	CTNAG	3 cut(s)	45, 90, 352
HpySE526I	ACGT	3 cut(s)	8, 32, 53
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	292, 631, 674, 793, 898
HspAI	GCGC	1 cut(s)	703
Kpn2I	TCCGGA	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	229, 480, 496, 608
LguI	GCTCTTC	1 cut(s)	652
Lsp1109I	GCAGC	3 cut(s)	57, 246, 251
LweI	GCATC	1 cut(s)	888
MaeI	CTAG	3 cut(s)	164, 522, 777
MaeII	ACGT	3 cut(s)	8, 32, 53
MalI	GATC	4 cut(s)	231, 482, 498, 610
MboI	GATC	4 cut(s)	229, 480, 496, 608
MboII	GAAGA	6 cut(s)	68, 421, 525, 639, 668, 812
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	2 cut(s)	192, 758
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	101, 755
MnlI	CCTC	8 cut(s)	171, 259, 289, 580, 635, 652, 716, 826
Mox20I	TGGCCA	1 cut(s)	190
MroI	TCCGGA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	190
MspI	CCGG	7 cut(s)	171, 197, 212, 218, 314, 321, 396
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	2 cut(s)	347, 722
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	229, 480, 496, 608
NlaIII	CATG	5 cut(s)	292, 631, 674, 793, 898
NlaIV	GGNNCC	3 cut(s)	216, 435, 786
NspI	RCATGY	1 cut(s)	674
PciI	ACATGT	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	652
PctI	GAATGC	2 cut(s)	347, 722
PdmI	GAANNNNTTC	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	72, 241, 261
PleI	GAGTC	2 cut(s)	100, 754
PpsI	GAGTC	2 cut(s)	100, 754
PscI	ACATGT	1 cut(s)	670
PspFI	CCCAGC	2 cut(s)	116, 269
PspN4I	GGNNCC	3 cut(s)	216, 435, 786
PspPI	GGNCC	2 cut(s)	180, 589
PstI	CTGCAG	1 cut(s)	264
PstNI	CAGNNNCTG	2 cut(s)	116, 245
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	1 cut(s)	797
RsaNI	GTAC	1 cut(s)	796
SapI	GCTCTTC	1 cut(s)	652
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	3 cut(s)	71, 240, 260
Sau3AI	GATC	4 cut(s)	229, 480, 496, 608
Sau96I	GGNCC	2 cut(s)	180, 589
SchI	GAGTC	2 cut(s)	101, 755
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	9 cut(s)	11, 35, 51, 56, 237, 244, 478, 523, 663
SfaNI	GCATC	1 cut(s)	888
SfcI	CTRYAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	589
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
Sse9I	AATT	2 cut(s)	192, 758
SsiI	CCGC	1 cut(s)	142
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	3 cut(s)	164, 522, 777
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	579
TaiI	ACGT	3 cut(s)	11, 35, 56
TasI	AATT	2 cut(s)	192, 758
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	3 cut(s)	70, 239, 259
TspDTI	ATGAA	3 cut(s)	429, 644, 857
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	589
XbaI	TCTAGA	1 cut(s)	776
XceI	RCATGY	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	3 cut(s)	164, 522, 777
ZraI	GACGTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.