RLG00000008490

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
31142329 .. 31142927
599 bp
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UTR
Exon/CDS
Intron
RLM00000008490

Sequence Viewer

Length: 405 bp
ATGACCAAGGAAACCATAGATCTTTTCAACAACATCAACTTACCTAGTATGGTGTCTTCAACGGCCACGATACTTCGGCTATGGGATGACTTTGGAACTGCCAAGGATGAGGACCAAAACGGGTTTGATGGATCATACATAGAGTGCTACATGAAAGAACACAAAGACTCTTCTGTTGAAGAGGTGCAAGCATATGTAATCCAAAAGATTTCAGATGAGTGGAAGTGCCTCAACCAAGAATGTTCAGAGTCCTTTACACAATTCGCTCTCAATATTTCTAGAATGGTTCCCATGATGTACGATTACAATGCCCATCATTGTCTTCCAAGCCTTGAGGAGAATATGAAGTCGTTGCTTTCGGATAGTTTTCTTGCCAAAGGCATCTACGGGAAACCCATGCAGTAG

Protein Analysis

135

Amino Acids

15.42

Weight (kDa)

4.57

Isoelectric Point (pI)

56.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 2 - 75 1.5e-13 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 7 - 75 3.9e-10 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 3 cut(s) 28, 60, 179
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 112
BarI GAAGNNNNNNTAC 2 cut(s) 40, 72
BbsI GAAGAC 2 cut(s) 48, 314
BccI CCATC 2 cut(s) 122, 321
BceAI ACGGC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BfaI CTAG 2 cut(s) 45, 279
BglII AGATCT 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 288
BmsI GCATC 1 cut(s) 390
BpiI GAAGAC 2 cut(s) 48, 314
BpuEI CTTGAG 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 6, 102
BseDI CCNNGG 2 cut(s) 6, 102
BseGI GGATG 2 cut(s) 91, 112
BseRI GAGGAG 1 cut(s) 350
BshFI GGCC 1 cut(s) 65
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 19, 131
BspANI GGCC 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 6, 102
BssMI GATC 2 cut(s) 19, 131
BssT1I CCWWGG 2 cut(s) 6, 102
Bst6I CTCTTC 2 cut(s) 174, 175
BstC8I GCNNGC 1 cut(s) 189
BstF5I GGATG 2 cut(s) 91, 112
BstKTI GATC 2 cut(s) 22, 134
BstMBI GATC 2 cut(s) 19, 131
BstV2I GAAGAC 2 cut(s) 48, 314
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 91, 112
Cac8I GCNNGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 298
CviAII CATG 3 cut(s) 151, 292, 397
CviJI RGCY 3 cut(s) 65, 79, 330
CviKI_1 RGCY 3 cut(s) 65, 79, 330
CviQI GTAC 1 cut(s) 298
DpnI GATC 2 cut(s) 21, 133
DpnII GATC 2 cut(s) 19, 131
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 174, 175
EarI CTCTTC 2 cut(s) 174, 175
Eco130I CCWWGG 2 cut(s) 6, 102
Eco47I GGWCC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 6, 102
ErhI CCWWGG 2 cut(s) 6, 102
FaeI CATG 3 cut(s) 154, 295, 400
FatI CATG 3 cut(s) 150, 291, 396
FauNDI CATATG 1 cut(s) 193
FokI GGATG 2 cut(s) 98, 119
FspBI CTAG 2 cut(s) 45, 279
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 3 cut(s) 154, 295, 400
HinfI GANTC 2 cut(s) 167, 248
Hpy188I TCNGA 3 cut(s) 214, 247, 361
Hpy188III TCNNGA 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 187, 400
Hsp92II CATG 3 cut(s) 154, 295, 400
Kzo9I GATC 2 cut(s) 19, 131
LweI GCATC 1 cut(s) 390
MaeI CTAG 2 cut(s) 45, 279
MalI GATC 2 cut(s) 21, 133
MboI GATC 2 cut(s) 19, 131
MboII GAAGA 4 cut(s) 48, 162, 191, 314
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 260
MlyI GAGTC 2 cut(s) 161, 257
MnlI CCTC 4 cut(s) 103, 175, 239, 328
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 19, 131
NlaIII CATG 3 cut(s) 154, 295, 400
NlaIV GGNNCC 1 cut(s) 288
PleI GAGTC 2 cut(s) 161, 256
PpsI GAGTC 2 cut(s) 161, 256
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
Sau3AI GATC 2 cut(s) 19, 131
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 2 cut(s) 161, 257
SetI ASST 2 cut(s) 46, 186
SfaNI GCATC 1 cut(s) 390
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 1 cut(s) 260
SspI AATATT 1 cut(s) 274
SspMI CTAG 2 cut(s) 45, 279
StyI CCWWGG 2 cut(s) 6, 102
TasI AATT 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 167, 359
VpaK11BI GGWCC 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 278
XspI CTAG 2 cut(s) 45, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.