RLG00000008459

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
30891889 .. 30892508
620 bp
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UTR
Exon/CDS
Intron
RLM00000008459

Sequence Viewer

Length: 426 bp
ATGACCAAGGAAACCATAGATCTTTTCAACAACATCAACTTACCTAGTATGGTGTCTTCAACGGCCACGATACTTCGGCTATGGGATGACTTTGGAACTGCCAAGGATGAGGACCAAAACGGGTTTGATGGATCATGCATAGAGTGCTACATGAAAGAACACAAAGACTCTTCTGTTGAAGAGGTGCAAGCATATGTAATCCAAAAGATTTCAGATGAGTGGAAGTGCCTCAACCAAGAATGCTTCTCTGCTTGCAATCCATTTTCAGAGTCCTTTACACAATTCGCTCTCAATATTTCTAGAATGGTTCCCATGATGTACGATTACAATGCCCATCATTGTCTTCCAAGCCTTGAGGAGAATATGAAGTCGTTGCTTTCGGATAGTTTTCTTGCCAAAGGCATCTACGGGAAACCCATGCAGTAG

Protein Analysis

142

Amino Acids

16.12

Weight (kDa)

4.57

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 2 - 75 2.2e-13 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 7 - 75 5e-10 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 3 cut(s) 28, 60, 179
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 112
BarI GAAGNNNNNNTAC 2 cut(s) 40, 72
BbsI GAAGAC 2 cut(s) 48, 335
BccI CCATC 2 cut(s) 122, 342
BceAI ACGGC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BfaI CTAG 2 cut(s) 45, 300
BglII AGATCT 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 1 cut(s) 411
BpiI GAAGAC 2 cut(s) 48, 335
BpuEI CTTGAG 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 6, 102
BseDI CCNNGG 2 cut(s) 6, 102
BseGI GGATG 2 cut(s) 91, 112
BseRI GAGGAG 1 cut(s) 371
BshFI GGCC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 19, 131
BspANI GGCC 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 6, 102
BssMI GATC 2 cut(s) 19, 131
BssT1I CCWWGG 2 cut(s) 6, 102
Bst6I CTCTTC 2 cut(s) 174, 175
BstAPI GCANNNNNTGC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 189, 253
BstF5I GGATG 2 cut(s) 91, 112
BstKTI GATC 2 cut(s) 22, 134
BstMBI GATC 2 cut(s) 19, 131
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstV2I GAAGAC 2 cut(s) 48, 335
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 91, 112
Cac8I GCNNGC 2 cut(s) 189, 253
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 319
CviAII CATG 4 cut(s) 135, 151, 313, 418
CviJI RGCY 3 cut(s) 65, 79, 351
CviKI_1 RGCY 3 cut(s) 65, 79, 351
CviQI GTAC 1 cut(s) 319
DpnI GATC 2 cut(s) 21, 133
DpnII GATC 2 cut(s) 19, 131
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 174, 175
EarI CTCTTC 2 cut(s) 174, 175
Eco130I CCWWGG 2 cut(s) 6, 102
Eco47I GGWCC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 6, 102
EcoT22I ATGCAT 1 cut(s) 140
ErhI CCWWGG 2 cut(s) 6, 102
FaeI CATG 4 cut(s) 138, 154, 316, 421
FatI CATG 4 cut(s) 134, 150, 312, 417
FauNDI CATATG 1 cut(s) 193
FokI GGATG 2 cut(s) 98, 119
FspBI CTAG 2 cut(s) 45, 300
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 4 cut(s) 138, 154, 316, 421
HinfI GANTC 2 cut(s) 167, 269
Hpy188I TCNGA 3 cut(s) 214, 268, 382
Hpy188III TCNNGA 1 cut(s) 300
HpyCH4V TGCA 4 cut(s) 138, 187, 255, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
Hsp92II CATG 4 cut(s) 138, 154, 316, 421
Kzo9I GATC 2 cut(s) 19, 131
LweI GCATC 1 cut(s) 411
MaeI CTAG 2 cut(s) 45, 300
MalI GATC 2 cut(s) 21, 133
MboI GATC 2 cut(s) 19, 131
MboII GAAGA 4 cut(s) 48, 162, 191, 335
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 281
MlyI GAGTC 2 cut(s) 161, 278
MnlI CCTC 4 cut(s) 103, 175, 239, 349
Mph1103I ATGCAT 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 19, 131
NlaIII CATG 4 cut(s) 138, 154, 316, 421
NlaIV GGNNCC 1 cut(s) 309
NsiI ATGCAT 1 cut(s) 140
PctI GAATGC 1 cut(s) 245
PleI GAGTC 2 cut(s) 161, 277
PpsI GAGTC 2 cut(s) 161, 277
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
Sau3AI GATC 2 cut(s) 19, 131
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 2 cut(s) 161, 278
SetI ASST 2 cut(s) 46, 186
SfaNI GCATC 1 cut(s) 411
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 1 cut(s) 281
SspI AATATT 1 cut(s) 295
SspMI CTAG 2 cut(s) 45, 300
StyI CCWWGG 2 cut(s) 6, 102
TasI AATT 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 167, 380
VpaK11BI GGWCC 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 299
XspI CTAG 2 cut(s) 45, 300
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.