Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Reverse (-)

199030 .. 203392

Gene Structure 4363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGATTAAGAGCAGCAGCATGGGAATGGCTGTTCTGGGAGGAGGACTCGGAGGAGCTTGGCCGCCTTCTTGTTCAGCTTACTCCTCTTTCTTTGGGCATCCTCCGTCTCTTCCCCCCCTAAACCTCAACCTCAAATCCCCAAACAACCAAAAGTCTCCTCCTCCTCCTCGTTTTGGTGTATGCAAAGCTTCATGGCAAGAGCTTGTGGGAGTTGTGGTATTCTCTGCCATTCCATTCACGGCCGTGAAAGCCATAGCCAATAGCGCACTTGGACAGTCTCTGCAGAAGCGGTTGGAGGAAAGGAAGAAACTTGCTGTGGAGAATTCTTCCACCTTTAGGGCCTCCGCCCAAATCGCACGAAAACGCAGCTTGTGGTACGGAGAAGGGCGTCCCCGTTGGCTTGGCCCAATTCCATATGATTATCCTGCATATCTTACTGGAGAACTACCTGGGGATTATGGTTTTGATGTTATAGGTCTGAGCAAGGATCCTGTTGCTTTCCAAAAGTATTTTAACTTTGAAATACTCCATGCTCGTTGGGCGATGCTAGCTGCCCTTGGTGCTTTGGTTCCTGAAATATTAGATCTGTTAGGAGCCTTTCATTTTGTTGAACCAGTATGGTGGCGAGTTGGCTATTCAAAACTTAAGGGAGACACACTAGACTACCTTGGTATCCCGGGGCTCCATGTAGCAGGAAGCCAAGGAGTGATTGTCATAGCCATATGCCAAGTTCTCCTGATGGTTGGACCTGAATATGCAAGGTATTGTGGGATTGAAGCATTAGAGCCTTTGGGAATATACCTGCCAGGCGATGTTAATTACCCGGGAGGAGAGCTTTTTGATCCCTTGAACCTCGCCAAAGACCCCGTAGCCTTTGAGGAGCTGAAGGTGAAGGAGATAAAAAATGGGCGCCTAGCTATGGTGGCCTGGTTAGGCTTCTACAGTCAAGCTGCTTTGACAGGTAAAGGTCCTGTTCACAACTTGCTTGAACACATTTCAGACCCCTTACACAATAATGTGTTTACACTACTCAAATCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

348

Amino Acids

37.83

Weight (kDa)

8.52

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	142 - 317	4.3e-43	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	909
AciI	CCGC	3 cut(s)	62, 289, 345
AclWI	GGATC	3 cut(s)	482, 495, 836
AcoI	YGGCCR	2 cut(s)	59, 240
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	905
AcyI	GRCGYC	2 cut(s)	388, 910
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	173, 336, 919
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	6 cut(s)	521, 611, 639, 776, 850, 989
AjnI	CCWGG	3 cut(s)	448, 805, 926
AleI	CACNNNNGTG	1 cut(s)	242
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
Alw26I	GTCTC	4 cut(s)	111, 159, 282, 645
AlwI	GGATC	3 cut(s)	482, 495, 836
AlwNI	CAGNNNCTG	1 cut(s)	280
Ama87I	CYCGRG	2 cut(s)	676, 823
AoxI	GGCC	5 cut(s)	59, 240, 339, 403, 924
ApeKI	GCWGC	5 cut(s)	12, 15, 366, 551, 950
ApoI	RAATTY	1 cut(s)	322
AspLEI	GCGC	2 cut(s)	266, 912
AspS9I	GGNCC	4 cut(s)	339, 404, 746, 968
AsuC2I	CCSGG	4 cut(s)	677, 678, 824, 825
AsuHPI	GGTGA	1 cut(s)	901
AsuNHI	GCTAGC	1 cut(s)	547
AvaI	CYCGRG	2 cut(s)	676, 823
AvaII	GGWCC	2 cut(s)	746, 968
BaeI	ACNNNNGTAYC	2 cut(s)	655, 688
BamHI	GGATCC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	909
BanII	GRGCYC	1 cut(s)	684
BbvI	GCAGC	5 cut(s)	24, 27, 378, 538, 937
BccI	CCATC	1 cut(s)	733
BceAI	ACGGC	2 cut(s)	227, 255
BciT130I	CCWGG	3 cut(s)	450, 807, 928
BciVI	GTATCC	1 cut(s)	683
BcnI	CCSGG	4 cut(s)	677, 678, 824, 825
BcoDI	GTCTC	4 cut(s)	111, 159, 282, 645
BfaI	CTAG	3 cut(s)	548, 659, 914
BfmI	CTRYAG	2 cut(s)	281, 940
BfoI	RGCGCY	1 cut(s)	913
BfrI	CTTAAG	1 cut(s)	644
BfuAI	ACCTGC	1 cut(s)	810
BfuI	GTATCC	1 cut(s)	683
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	6 cut(s)	13, 16, 62, 367, 552, 951
BlsI	GCNGC	6 cut(s)	14, 17, 63, 368, 553, 952
Bme1390I	CCNGG	7 cut(s)	450, 677, 678, 807, 824, 825, 928
Bme18I	GGWCC	2 cut(s)	746, 968
BmeT110I	CYCGRG	2 cut(s)	676, 823
BmgT120I	GGNCC	4 cut(s)	339, 404, 746, 968
BmiI	GGNNCC	5 cut(s)	489, 570, 595, 683, 911
BmrFI	CCNGG	7 cut(s)	450, 677, 678, 807, 824, 825, 928
BmsI	GCATC	2 cut(s)	106, 534
BmtI	GCTAGC	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpmI	CTGGAG	1 cut(s)	459
BpuMI	CCSGG	4 cut(s)	677, 678, 824, 825
BsaHI	GRCGYC	2 cut(s)	388, 910
BsaJI	CCNNGG	7 cut(s)	449, 556, 667, 676, 677, 700, 823
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 696, 726
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 336, 919
Bse1I	ACTGG	2 cut(s)	442, 614
BseBI	CCWGG	3 cut(s)	450, 807, 928
BseDI	CCNNGG	7 cut(s)	449, 556, 667, 676, 677, 700, 823
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	3 cut(s)	173, 336, 919
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	2 cut(s)	442, 614
BseRI	GAGGAG	9 cut(s)	54, 66, 73, 147, 150, 153, 156, 843, 893
BseX3I	CGGCCG	1 cut(s)	240
BseXI	GCAGC	5 cut(s)	24, 27, 378, 538, 937
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	5 cut(s)	61, 242, 341, 405, 926
BshNI	GGYRCC	1 cut(s)	909
BsiEI	CGRYCG	1 cut(s)	243
BsiHKCI	CYCGRG	2 cut(s)	676, 823
BsiSI	CCGG	2 cut(s)	677, 824
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	3 cut(s)	173, 336, 919
BsmAI	GTCTC	4 cut(s)	111, 159, 282, 645
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	5 cut(s)	61, 242, 341, 405, 926
BsoBI	CYCGRG	2 cut(s)	676, 823
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	3 cut(s)	487, 583, 841
BspACI	CCGC	3 cut(s)	62, 289, 345
BspANI	GGCC	5 cut(s)	61, 242, 341, 405, 926
BspCNI	CTCAG	1 cut(s)	471
BspLI	GGNNCC	5 cut(s)	489, 570, 595, 683, 911
BspMAI	CTGCAG	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	810
BspOI	GCTAGC	1 cut(s)	551
BspPI	GGATC	3 cut(s)	482, 495, 836
BspT107I	GGYRCC	1 cut(s)	909
BspTI	CTTAAG	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	442, 614
BssECI	CCNNGG	7 cut(s)	449, 556, 667, 676, 677, 700, 823
BssMI	GATC	3 cut(s)	487, 583, 841
BssNI	GRCGYC	2 cut(s)	388, 910
BssT1I	CCWWGG	3 cut(s)	556, 667, 700
Bst2UI	CCWGG	3 cut(s)	450, 807, 928
Bst4CI	ACNGT	2 cut(s)	276, 944
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	2 cut(s)	388, 910
BstAFI	CTTAAG	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	479
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	913
BstHHI	GCGC	2 cut(s)	266, 912
BstKTI	GATC	3 cut(s)	490, 586, 844
BstMAI	GTCTC	4 cut(s)	111, 159, 282, 645
BstMBI	GATC	3 cut(s)	487, 583, 841
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	7 cut(s)	248, 263, 353, 539, 548, 560, 923
BstNI	CCWGG	3 cut(s)	450, 807, 928
BstSCI	CCNGG	7 cut(s)	448, 675, 676, 805, 822, 823, 926
BstSFI	CTRYAG	2 cut(s)	281, 940
BstV1I	GCAGC	5 cut(s)	24, 27, 378, 538, 937
BstX2I	RGATCY	2 cut(s)	487, 583
BstXI	CCANNNNNNTGG	1 cut(s)	621
BstYI	RGATCY	2 cut(s)	487, 583
BstZI	CGGCCG	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	5 cut(s)	61, 242, 341, 405, 926
BtgZI	GCGATG	2 cut(s)	557, 825
BtsCI	GGATG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	2 cut(s)	266, 912
Cfr13I	GGNCC	4 cut(s)	339, 404, 746, 968
Cfr9I	CCCGGG	2 cut(s)	676, 823
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	4 cut(s)	19, 192, 530, 686
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	479
DinI	GGCGCC	1 cut(s)	911
DpnI	GATC	3 cut(s)	489, 585, 843
DpnII	GATC	3 cut(s)	487, 583, 841
EaeI	YGGCCR	2 cut(s)	59, 240
EagI	CGGCCG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	334
EclXI	CGGCCG	1 cut(s)	240
Eco130I	CCWWGG	3 cut(s)	556, 667, 700
Eco24I	GRGCYC	1 cut(s)	684
Eco47I	GGWCC	2 cut(s)	746, 968
Eco52I	CGGCCG	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	905
Eco88I	CYCGRG	2 cut(s)	676, 823
EcoO109I	RGGNCCY	2 cut(s)	339, 968
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	3 cut(s)	448, 805, 926
EcoT14I	CCWWGG	3 cut(s)	556, 667, 700
EcoT38I	GRGCYC	1 cut(s)	684
EgeI	GGCGCC	1 cut(s)	911
EheI	GGCGCC	1 cut(s)	911
ErhI	CCWWGG	3 cut(s)	556, 667, 700
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	4 cut(s)	22, 195, 533, 689
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	18, 191, 529, 685
FauNDI	CATATG	2 cut(s)	415, 722
Fnu4HI	GCNGC	6 cut(s)	13, 16, 62, 367, 552, 951
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	6 cut(s)	13, 16, 62, 367, 552, 951
FspBI	CTAG	3 cut(s)	548, 659, 914
GlaI	GCGC	2 cut(s)	265, 911
GluI	GCNGC	6 cut(s)	13, 16, 62, 367, 552, 951
GsuI	CTGGAG	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	913
HaeIII	GGCC	5 cut(s)	61, 242, 341, 405, 926
HapII	CCGG	2 cut(s)	677, 824
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	2 cut(s)	266, 912
Hin1I	GRCGYC	2 cut(s)	388, 910
Hin1II	CATG	4 cut(s)	22, 195, 533, 689
Hin6I	GCGC	2 cut(s)	264, 910
HinP1I	GCGC	2 cut(s)	264, 910
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	677, 824
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	2 cut(s)	976, 1023
Hpy188I	TCNGA	3 cut(s)	50, 480, 1000
Hpy188III	TCNNGA	2 cut(s)	572, 736
Hpy8I	GTNNAC	2 cut(s)	976, 1023
HpyAV	CCTTC	4 cut(s)	75, 377, 880, 886
HpyCH4III	ACNGT	2 cut(s)	276, 944
HpyCH4V	TGCA	4 cut(s)	183, 283, 428, 758
HpyF10VI	GCNNNNNNNGC	7 cut(s)	248, 263, 353, 539, 548, 560, 923
HpyF3I	CTNAG	1 cut(s)	479
Hsp92I	GRCGYC	2 cut(s)	388, 910
Hsp92II	CATG	4 cut(s)	22, 195, 533, 689
HspAI	GCGC	2 cut(s)	264, 910
KasI	GGCGCC	1 cut(s)	909
Kzo9I	GATC	3 cut(s)	487, 583, 841
LmnI	GCTCC	4 cut(s)	53, 593, 687, 880
Lsp1109I	GCAGC	5 cut(s)	24, 27, 378, 538, 937
LweI	GCATC	2 cut(s)	106, 534
MaeI	CTAG	3 cut(s)	548, 659, 914
MalI	GATC	3 cut(s)	489, 585, 843
MboI	GATC	3 cut(s)	487, 583, 841
MboII	GAAGA	3 cut(s)	101, 316, 318
MflI	RGATCY	2 cut(s)	487, 583
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	3 cut(s)	322, 408, 817
Mly113I	GGCGCC	1 cut(s)	910
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	2 cut(s)	273, 724
MseI	TTAA	4 cut(s)	6, 513, 645, 816
MslI	CAYNNNNRTG	3 cut(s)	23, 242, 1014
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	2 cut(s)	677, 824
MspR9I	CCNGG	7 cut(s)	450, 677, 678, 807, 824, 825, 928
MvaI	CCWGG	3 cut(s)	450, 807, 928
MwoI	GCNNNNNNNGC	7 cut(s)	248, 263, 353, 539, 548, 560, 923
NarI	GGCGCC	1 cut(s)	910
NciI	CCSGG	4 cut(s)	677, 678, 824, 825
NdeI	CATATG	2 cut(s)	415, 722
NdeII	GATC	3 cut(s)	487, 583, 841
NheI	GCTAGC	1 cut(s)	547
NlaIII	CATG	4 cut(s)	22, 195, 533, 689
NlaIV	GGNNCC	5 cut(s)	489, 570, 595, 683, 911
OliI	CACNNNNGTG	1 cut(s)	242
PkrI	GCNGC	6 cut(s)	14, 17, 63, 368, 553, 952
PleI	GAGTC	1 cut(s)	39
PluTI	GGCGCC	1 cut(s)	913
PpsI	GAGTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	968
Psp5II	RGGWCCY	1 cut(s)	968
Psp6I	CCWGG	3 cut(s)	448, 805, 926
PspGI	CCWGG	3 cut(s)	448, 805, 926
PspN4I	GGNNCC	5 cut(s)	489, 570, 595, 683, 911
PspPI	GGNCC	4 cut(s)	339, 404, 746, 968
PspPPI	RGGWCCY	1 cut(s)	968
PstI	CTGCAG	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	2 cut(s)	487, 583
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	3 cut(s)	23, 242, 1014
SaqAI	TTAA	4 cut(s)	6, 513, 645, 816
SatI	GCNGC	6 cut(s)	13, 16, 62, 367, 552, 951
Sau3AI	GATC	3 cut(s)	487, 583, 841
Sau96I	GGNCC	4 cut(s)	339, 404, 746, 968
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	7 cut(s)	450, 677, 678, 807, 824, 825, 928
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	2 cut(s)	106, 534
SfcI	CTRYAG	2 cut(s)	281, 940
SfoI	GGCGCC	1 cut(s)	911
SinI	GGWCC	2 cut(s)	746, 968
SmaI	CCCGGG	2 cut(s)	678, 825
SmiMI	CAYNNNNRTG	3 cut(s)	23, 242, 1014
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	3 cut(s)	322, 408, 817
SsiI	CCGC	3 cut(s)	62, 289, 345
SspDI	GGCGCC	1 cut(s)	909
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	3 cut(s)	548, 659, 914
StyD4I	CCNGG	7 cut(s)	448, 675, 676, 805, 822, 823, 926
StyI	CCWWGG	3 cut(s)	556, 667, 700
TaaI	ACNGT	2 cut(s)	276, 944
TasI	AATT	3 cut(s)	322, 408, 817
TauI	GCSGC	1 cut(s)	64
Tru1I	TTAA	4 cut(s)	6, 513, 645, 816
Tru9I	TTAA	4 cut(s)	6, 513, 645, 816
TseI	GCWGC	5 cut(s)	12, 15, 366, 551, 950
TspDTI	ATGAA	2 cut(s)	180, 590
TspGWI	ACGGA	2 cut(s)	93, 393
TspMI	CCCGGG	2 cut(s)	676, 823
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	746, 968
XapI	RAATTY	1 cut(s)	322
XmaI	CCCGGG	2 cut(s)	676, 823
XspI	CTAG	3 cut(s)	548, 659, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.