pycom06g01150

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005297
Physical Location & Seq
Reverse (-)
1213375 .. 1217918
4544 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
ATGTTTACGTGCATAGCATGTACGAAGCAAACGGACGATGGAGGAGAAGAAGGAGCAGCGCGTGGCAGCGGCACCCCAAATACAAAAGAAGCCGTCAAAAGCCTGACGGCGCAGATTAAGGATATGGCACTGAAATTCTCTGGTGCGTACAAGCAATGCAAACCATGCACAGGGTCAAGCAATTATAAGAAAGGACGGCCGAGATACCCGGATTTTGATACTGCTTCTGAAGGGATGCCGTACCCCTATATGGGAGGTGCAAGCACAAGTTCTACACCTGCTTGGGACTTCACCTCTAATCATCAGTTGGGTGCAAGATCGGACTCTCGATTTACTAGACCATATGGTGGCGGTGATCGTGCATCAATATCAGCACAGTCTTGTGATGTTGTGCTAGAGGATGAGGATGAGCCTAAGGAGTGGATGGCACAGGTGGAACCCGGCGTACACATTACTTTTGTATCTCTCCCTAATGGGGGAAATGATCTCAAACGAATTCGTTTCAGCCGAGAGATGTTCAACAAATGGCAAGCGCAGCGATGGTGGGGTGAGAATTATGACCGCATCATGGAGCTCTACAATGTCCAGAGATTCAACCGGCAAGCTCTTCACACTCCCCCAAGATCCGAAGATGAGCAGAGAGATTCTTCTTACTCAAGGATGGGATCTGCTATGGAAAGCCCTATGGCTCCATCAGTGAACAAAGATTGGACACCGAGGCACAACTATAAACCGTCTGGAACTGGAAGTAGAGGGTATTTCCCCTCTGATGGTTTGGATCATGGTGGTGGCAGTGGTGGTCACTACTATAATGCTGGTGGGTCAAGTGCTTATGGAGCAGGTGGCCACAAGGGAGAGGCATCATCTTTTGATGCATCGCGGACAACAACCTCCTCTCGAGATGAAGCTTCAGTCTCAATTAGCAATGCTAGTGAAGTGGAGTCGGAATGGGTTGAGGAAGATGAGCCTGGGGTGTATATAACCATTAGGCAGCTAGCGGATGGCACTCGGGAGCTCAGGCGTGTCAGATTCAGCCGCGAAAGGTTTGGGGAGATGAATGCGAAGACATGGTGGGAAGAAAACAGAGAGAGAATACAAGCACAATACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

371

Amino Acids

41.23

Weight (kDa)

5.91

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 23 - 56 1.8e-17 Transcription factor BRX N-terminal domain
BRX PF08381 139 - 193 3.3e-26 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 314 - 369 4.9e-27 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AarI CACCTGC 2 cut(s) 286, 830
Acc36I ACCTGC 2 cut(s) 286, 830
AccB1I GGYRCC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 347
AccII CGCG 3 cut(s) 61, 880, 1038
AciI CCGC 6 cut(s) 69, 351, 562, 880, 998, 1036
AclWI GGATC 3 cut(s) 618, 673, 786
AcoI YGGCCR 2 cut(s) 197, 844
AcsI RAATTY 2 cut(s) 134, 495
AcuI CTGAAG 2 cut(s) 249, 894
AfaI GTAC 4 cut(s) 22, 149, 242, 447
AfiI CCNNNNNNNGG 8 cut(s) 170, 250, 251, 347, 475, 476, 568, 770
AgsI TTSAA 2 cut(s) 520, 595
AjnI CCWGG 1 cut(s) 967
AluBI AGCT 5 cut(s) 574, 605, 908, 994, 1015
AluI AGCT 5 cut(s) 574, 605, 908, 994, 1015
Alw21I GWGCWC 2 cut(s) 576, 1017
Alw26I GTCTC 1 cut(s) 919
AlwI GGATC 3 cut(s) 618, 673, 786
Ama87I CYCGRG 2 cut(s) 897, 1008
AoxI GGCC 2 cut(s) 197, 844
ApeKI GCWGC 4 cut(s) 56, 66, 535, 991
ApoI RAATTY 2 cut(s) 134, 495
AspLEI GCGC 3 cut(s) 61, 112, 535
AsuC2I CCSGG 2 cut(s) 209, 441
AsuHPI GGTGA 3 cut(s) 283, 365, 560
AsuNHI GCTAGC 1 cut(s) 994
AvaI CYCGRG 2 cut(s) 897, 1008
AxyI CCTNAGG 1 cut(s) 414
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BalI TGGCCA 1 cut(s) 846
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 2 cut(s) 576, 1017
BbsI GAAGAC 1 cut(s) 1070
Bbv12I GWGCWC 2 cut(s) 576, 1017
BbvI GCAGC 4 cut(s) 68, 78, 547, 1003
BccI CCATC 7 cut(s) 32, 418, 534, 655, 700, 764, 995
BceAI ACGGC 4 cut(s) 77, 123, 212, 223
BciT130I CCWGG 1 cut(s) 969
BcnI CCSGG 2 cut(s) 209, 441
BcoDI GTCTC 1 cut(s) 919
BfaI CTAG 4 cut(s) 336, 395, 930, 995
BfuAI ACCTGC 2 cut(s) 286, 830
BisI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
BlsI GCNGC 6 cut(s) 58, 68, 71, 537, 993, 1037
Bme1390I CCNGG 3 cut(s) 209, 441, 969
BmeT110I CYCGRG 2 cut(s) 897, 1008
BmiI GGNNCC 3 cut(s) 73, 438, 690
BmrFI CCNGG 3 cut(s) 209, 441, 969
BmsI GCATC 6 cut(s) 225, 371, 573, 862, 869, 884
BmtI GCTAGC 1 cut(s) 998
BpiI GAAGAC 1 cut(s) 1070
Bpu10I CCTNAGC 1 cut(s) 1016
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 2 cut(s) 209, 441
BsaAI YACGTR 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 716, 968
Bsc4I CCNNNNNNNGG 8 cut(s) 170, 250, 251, 347, 475, 476, 568, 770
Bse118I RCCGGY 1 cut(s) 597
Bse1I ACTGG 1 cut(s) 748
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 2 cut(s) 161, 931
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 2 cut(s) 716, 968
BseGI GGATG 6 cut(s) 240, 406, 412, 429, 666, 1006
BseLI CCNNNNNNNGG 8 cut(s) 170, 250, 251, 347, 475, 476, 568, 770
BseMI GCAATG 2 cut(s) 161, 931
BseMII CTCAG 1 cut(s) 1030
BseNI ACTGG 1 cut(s) 748
BseRI GAGGAG 2 cut(s) 57, 883
BseX3I CGGCCG 1 cut(s) 197
BseXI GCAGC 4 cut(s) 68, 78, 547, 1003
Bsh1236I CGCG 3 cut(s) 61, 880, 1038
Bsh1285I CGRYCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 199, 846
BshNI GGYRCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 576, 1017
BsiHKCI CYCGRG 2 cut(s) 897, 1008
BsiSI CCGG 3 cut(s) 209, 441, 598
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 8 cut(s) 170, 250, 251, 347, 475, 476, 568, 770
BsmAI GTCTC 1 cut(s) 919
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 1063
BsnI GGCC 2 cut(s) 199, 846
BsoBI CYCGRG 2 cut(s) 897, 1008
Bsp1286I GDGCHC 2 cut(s) 576, 1017
Bsp143I GATC 6 cut(s) 317, 355, 484, 623, 665, 778
BspACI CCGC 6 cut(s) 69, 351, 562, 880, 998, 1036
BspANI GGCC 2 cut(s) 199, 846
BspCNI CTCAG 1 cut(s) 1029
BspFNI CGCG 3 cut(s) 61, 880, 1038
BspLI GGNNCC 3 cut(s) 73, 438, 690
BspMI ACCTGC 2 cut(s) 286, 830
BspOI GCTAGC 1 cut(s) 998
BspPI GGATC 3 cut(s) 618, 673, 786
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 161, 931
BsrFI RCCGGY 1 cut(s) 597
BsrI ACTGG 1 cut(s) 748
BssAI RCCGGY 1 cut(s) 597
BssECI CCNNGG 2 cut(s) 716, 968
BssMI GATC 6 cut(s) 317, 355, 484, 623, 665, 778
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 2 cut(s) 378, 735
Bst6I CTCTTC 1 cut(s) 612
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 4 cut(s) 262, 531, 603, 996
BstDEI CTNAG 2 cut(s) 414, 1016
BstF5I GGATG 6 cut(s) 240, 406, 412, 429, 666, 1006
BstFNI CGCG 3 cut(s) 61, 880, 1038
BstHHI GCGC 3 cut(s) 61, 112, 535
BstKTI GATC 6 cut(s) 320, 358, 487, 626, 668, 781
BstMAI GTCTC 1 cut(s) 919
BstMBI GATC 6 cut(s) 317, 355, 484, 623, 665, 778
BstMCI CGRYCG 1 cut(s) 200
BstMWI GCNNNNNNNGC 3 cut(s) 165, 535, 836
BstNI CCWGG 1 cut(s) 969
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 3 cut(s) 207, 439, 967
BstUI CGCG 3 cut(s) 61, 880, 1038
BstV1I GCAGC 4 cut(s) 68, 78, 547, 1003
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 2 cut(s) 623, 665
BstYI RGATCY 2 cut(s) 623, 665
BstZI CGGCCG 1 cut(s) 197
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 2 cut(s) 199, 846
BtgZI GCGATG 2 cut(s) 553, 861
BtsCI GGATG 6 cut(s) 240, 406, 412, 429, 666, 1006
BtsI GCAGTG 1 cut(s) 799
BtsIMutI CAGTG 3 cut(s) 128, 702, 799
BveI ACCTGC 2 cut(s) 286, 830
Cac8I GCNNGC 4 cut(s) 262, 531, 603, 996
CfoI GCGC 3 cut(s) 61, 112, 535
Cfr10I RCCGGY 1 cut(s) 597
Csp6I GTAC 4 cut(s) 21, 148, 241, 446
CviAII CATG 5 cut(s) 18, 165, 568, 782, 1068
CviQI GTAC 4 cut(s) 21, 148, 241, 446
DdeI CTNAG 2 cut(s) 414, 1016
DpnI GATC 6 cut(s) 319, 357, 486, 625, 667, 780
DpnII GATC 6 cut(s) 317, 355, 484, 623, 665, 778
EaeI YGGCCR 2 cut(s) 197, 844
EagI CGGCCG 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Ecl136II GAGCTC 2 cut(s) 574, 1015
EclXI CGGCCG 1 cut(s) 197
Eco24I GRGCYC 2 cut(s) 576, 1017
Eco52I CGGCCG 1 cut(s) 197
Eco53kI GAGCTC 2 cut(s) 574, 1015
Eco57I CTGAAG 2 cut(s) 249, 894
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 2 cut(s) 897, 1008
EcoICRI GAGCTC 2 cut(s) 574, 1015
EcoRI GAATTC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 967
EcoT22I ATGCAT 1 cut(s) 877
EcoT38I GRGCYC 2 cut(s) 576, 1017
FaeI CATG 5 cut(s) 21, 168, 571, 785, 1071
FaqI GGGAC 1 cut(s) 299
FatI CATG 5 cut(s) 17, 164, 567, 781, 1067
FauNDI CATATG 1 cut(s) 343
Fnu4HI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
FokI GGATG 6 cut(s) 247, 413, 419, 436, 673, 1013
FriOI GRGCYC 2 cut(s) 576, 1017
Fsp4HI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
FspBI CTAG 4 cut(s) 336, 395, 930, 995
GlaI GCGC 3 cut(s) 60, 111, 534
GluI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
HaeIII GGCC 2 cut(s) 199, 846
HapII CCGG 3 cut(s) 209, 441, 598
HhaI GCGC 3 cut(s) 61, 112, 535
Hin1II CATG 5 cut(s) 21, 168, 571, 785, 1071
Hin6I GCGC 3 cut(s) 59, 110, 533
HinP1I GCGC 3 cut(s) 59, 110, 533
HindIII AAGCTT 1 cut(s) 906
HinfI GANTC 5 cut(s) 323, 591, 644, 941, 1029
HpaII CCGG 3 cut(s) 209, 441, 598
HphI GGTGA 3 cut(s) 283, 365, 560
Hpy166II GTNNAC 3 cut(s) 6, 448, 700
Hpy188I TCNGA 6 cut(s) 229, 322, 628, 769, 946, 1028
Hpy188III TCNNGA 6 cut(s) 327, 586, 738, 897, 899, 1010
Hpy8I GTNNAC 3 cut(s) 6, 448, 700
HpyAV CCTTC 2 cut(s) 44, 224
HpyCH4III ACNGT 2 cut(s) 378, 735
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 7 cut(s) 12, 159, 168, 260, 314, 362, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 535, 836
HpyF3I CTNAG 2 cut(s) 414, 1016
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 5 cut(s) 21, 168, 571, 785, 1071
HspAI GCGC 3 cut(s) 59, 110, 533
Kzo9I GATC 6 cut(s) 317, 355, 484, 623, 665, 778
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 5 cut(s) 53, 571, 694, 836, 1012
Lsp1109I GCAGC 4 cut(s) 68, 78, 547, 1003
LweI GCATC 6 cut(s) 225, 371, 573, 862, 869, 884
MaeI CTAG 4 cut(s) 336, 395, 930, 995
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 800
MalI GATC 6 cut(s) 319, 357, 486, 625, 667, 780
MboI GATC 6 cut(s) 317, 355, 484, 623, 665, 778
MboII GAAGA 7 cut(s) 59, 599, 639, 641, 971, 1075, 1088
MflI RGATCY 2 cut(s) 623, 665
MhlI GDGCHC 2 cut(s) 576, 1017
MlsI TGGCCA 1 cut(s) 846
MluCI AATT 5 cut(s) 134, 181, 495, 553, 918
MluNI TGGCCA 1 cut(s) 846
MlyI GAGTC 2 cut(s) 317, 950
MmeI TCCRAC 1 cut(s) 924
Mox20I TGGCCA 1 cut(s) 846
Mph1103I ATGCAT 1 cut(s) 877
MscI TGGCCA 1 cut(s) 846
MseI TTAA 2 cut(s) 117, 1111
MslI CAYNNNNRTG 1 cut(s) 786
Msp20I TGGCCA 1 cut(s) 846
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 209, 441, 598
MspR9I CCNGG 3 cut(s) 209, 441, 969
Mva1269I GAATGC 1 cut(s) 1063
MvaI CCWGG 1 cut(s) 969
MvnI CGCG 3 cut(s) 61, 880, 1038
MwoI GCNNNNNNNGC 3 cut(s) 165, 535, 836
NciI CCSGG 2 cut(s) 209, 441
NdeI CATATG 1 cut(s) 343
NdeII GATC 6 cut(s) 317, 355, 484, 623, 665, 778
NheI GCTAGC 1 cut(s) 994
NlaIII CATG 5 cut(s) 21, 168, 571, 785, 1071
NlaIV GGNNCC 3 cut(s) 73, 438, 690
NmeAIII GCCGAG 2 cut(s) 225, 533
NmuCI GTSAC 1 cut(s) 800
NsiI ATGCAT 1 cut(s) 877
NspI RCATGY 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 897
PaqCI CACCTGC 2 cut(s) 286, 830
PciSI GCTCTTC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 505
PctI GAATGC 1 cut(s) 1063
PfeI GAWTC 3 cut(s) 591, 644, 1029
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 6 cut(s) 58, 68, 71, 537, 993, 1037
PleI GAGTC 2 cut(s) 317, 949
PpsI GAGTC 2 cut(s) 317, 949
Ppu21I YACGTR 1 cut(s) 9
PsiI TTATAA 1 cut(s) 186
Psp124BI GAGCTC 2 cut(s) 576, 1017
Psp6I CCWGG 1 cut(s) 967
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 3 cut(s) 73, 438, 690
PsrI GAACNNNNNNTAC 2 cut(s) 429, 461
PsuI RGATCY 2 cut(s) 623, 665
RsaI GTAC 4 cut(s) 22, 149, 242, 447
RsaNI GTAC 4 cut(s) 21, 148, 241, 446
RseI CAYNNNNRTG 1 cut(s) 786
SacI GAGCTC 2 cut(s) 576, 1017
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 2 cut(s) 117, 1111
SatI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
Sau3AI GATC 6 cut(s) 317, 355, 484, 623, 665, 778
SchI GAGTC 2 cut(s) 317, 950
ScrFI CCNGG 3 cut(s) 209, 441, 969
SduI GDGCHC 2 cut(s) 576, 1017
SfaNI GCATC 6 cut(s) 225, 371, 573, 862, 869, 884
Sfr274I CTCGAG 1 cut(s) 897
SlaI CTCGAG 1 cut(s) 897
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 2 cut(s) 655, 897
SmoI CTYRAG 2 cut(s) 655, 897
Sse9I AATT 5 cut(s) 134, 181, 495, 553, 918
SsiI CCGC 6 cut(s) 69, 351, 562, 880, 998, 1036
SspMI CTAG 4 cut(s) 336, 395, 930, 995
SstI GAGCTC 2 cut(s) 576, 1017
StyD4I CCNGG 3 cut(s) 207, 439, 967
TaaI ACNGT 2 cut(s) 378, 735
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 328, 898
TasI AATT 5 cut(s) 134, 181, 495, 553, 918
TauI GCSGC 2 cut(s) 72, 1038
TfiI GAWTC 3 cut(s) 591, 644, 1029
Tru1I TTAA 2 cut(s) 117, 1111
Tru9I TTAA 2 cut(s) 117, 1111
TscAI CASTG 3 cut(s) 135, 702, 799
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 4 cut(s) 56, 66, 535, 991
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 2 cut(s) 918, 1070
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 3 cut(s) 135, 702, 799
Van91I CCANNNNNTGG 1 cut(s) 347
XapI RAATTY 2 cut(s) 134, 495
XceI RCATGY 1 cut(s) 21
XhoI CTCGAG 1 cut(s) 897
XspI CTAG 4 cut(s) 336, 395, 930, 995
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.