pycom06g02150

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009689
Physical Location & Seq
Reverse (-)
2596286 .. 2597877
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGACTCCATGCACTTCAGTTCCTTCTAGTTTACAGGGGGGATCATGTGCCGGTAAAACTTGTACTGATGCTTGTTTACAAACAAGCTTTGGGAGATCATTTTCTCTTGAAGATGATAGAATGGTCAAGACAGCAATGGGGACTGCAGAAAGAGCACTATCATCAATGAAAACGAGAATTTCTGGTGATTCTGACATAAGTGAAGATAAAAAGGATGAGAATAGGGAAGGGGAAGTGGCTGAAAGTACTAGCTCAGAGACAGATCTTACCGCTGTATTAAATGCATGGTATTCTGCAGGTTTCTATACTGGCAAGTATCTCATGGAGCAATCAGTTGCAAAGAAGCGCCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMN

Protein Analysis

119

Amino Acids

12.68

Weight (kDa)

5.14

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AciI CCGC 1 cut(s) 270
AclWI GGATC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 2 cut(s) 64, 247
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 2 cut(s) 87, 252
AluI AGCT 2 cut(s) 87, 252
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 177
AspLEI GCGC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 2 cut(s) 27, 249
BfmI CTRYAG 2 cut(s) 144, 294
BfoI RGCGCY 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 287
BglII AGATCT 1 cut(s) 262
BmcAI AGTACT 1 cut(s) 247
BmsI GCATC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 3 cut(s) 41, 95, 262
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 266
BspMAI CTGCAG 2 cut(s) 148, 298
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 3 cut(s) 41, 95, 262
BssT1I CCWWGG 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 220
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 3 cut(s) 44, 98, 265
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 3 cut(s) 41, 95, 262
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSFI CTRYAG 2 cut(s) 144, 294
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 287
CfoI GCGC 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 50
Csp6I GTAC 2 cut(s) 63, 246
CviAII CATG 5 cut(s) 9, 45, 285, 322, 350
CviJI RGCY 3 cut(s) 87, 239, 252
CviKI_1 RGCY 3 cut(s) 87, 239, 252
CviQI GTAC 2 cut(s) 63, 246
DdeI CTNAG 1 cut(s) 253
DpnI GATC 3 cut(s) 43, 97, 264
DpnII GATC 3 cut(s) 41, 95, 262
Eco130I CCWWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 5 cut(s) 12, 48, 288, 325, 353
FaiI YATR 7 cut(s) 10, 46, 197, 286, 306, 323, 351
FaqI GGGAC 1 cut(s) 154
FatI CATG 5 cut(s) 8, 44, 284, 321, 349
FokI GGATG 1 cut(s) 227
FspBI CTAG 2 cut(s) 27, 249
GlaI GCGC 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 349
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 348
Hin1II CATG 5 cut(s) 12, 48, 288, 325, 353
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 2 cut(s) 4, 188
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 2 cut(s) 32, 77
Hpy188I TCNGA 2 cut(s) 193, 256
Hpy188III TCNNGA 2 cut(s) 107, 127
Hpy8I GTNNAC 2 cut(s) 32, 77
HpyAV CCTTC 2 cut(s) 33, 221
HpyCH4V TGCA 5 cut(s) 12, 146, 284, 296, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 5 cut(s) 12, 48, 288, 325, 353
HspAI GCGC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 41, 95, 262
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 5 cut(s) 20, 64, 168, 282, 294
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 27, 249
MalI GATC 3 cut(s) 43, 97, 264
MboI GATC 3 cut(s) 41, 95, 262
MboII GAAGA 2 cut(s) 122, 215
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 2 cut(s) 278, 355
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 349
NdeII GATC 3 cut(s) 41, 95, 262
NlaIII CATG 5 cut(s) 12, 48, 288, 325, 353
NsiI ATGCAT 1 cut(s) 286
PfeI GAWTC 1 cut(s) 188
PstI CTGCAG 2 cut(s) 148, 298
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 2 cut(s) 64, 247
RsaNI GTAC 2 cut(s) 63, 246
SaqAI TTAA 2 cut(s) 278, 355
Sau3AI GATC 3 cut(s) 41, 95, 262
ScaI AGTACT 1 cut(s) 247
SduI GDGCHC 1 cut(s) 157
SetI ASST 3 cut(s) 89, 254, 301
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 2 cut(s) 144, 294
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 270
SspMI CTAG 2 cut(s) 27, 249
StyI CCWWGG 1 cut(s) 349
TasI AATT 1 cut(s) 177
TatI WGTACW 2 cut(s) 62, 245
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 278, 355
Tru9I TTAA 2 cut(s) 278, 355
TspDTI ATGAA 1 cut(s) 182
XapI RAATTY 1 cut(s) 177
XspI CTAG 2 cut(s) 27, 249
ZrmI AGTACT 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.