Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Reverse (-)

6079951 .. 6080713

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCGACGCCGCCACTCTGTCTCTCTCTCCAAACCCAAGCTTCACCACCTCCTCCTCCTCCCACAAACCCTCTCTCTCTACCCCCAACTTTCTCAAATTCCCAACCCTATCCCCCAACCCCATCAAACCCCTCACCCACGCTCATCAATCCCAACTCCCAATCTCACGTGCCACCTTCACCACGCGCGCTGCCGCCTCCACAACCCCATCTACCACATTCCACGGCCTCTGCTACGTCTACCTAACCCTGGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGGTCTTACGCGCTCTGCGGCCTCCCCGCCTCCTACTCCACGCGCTTCGTGGATCCGGGAGAGACAAAGTCCAAGTACTCAATCATAATCGGGGGCGCTAACTTCGGGTGCGGATCGTCGCGCGAGCACGCGCCGGTGGCGCTGGGAGCGGCGGGAGTGGCGGCGGTGGTGGCGGAGTCGTACGCGCGGATCTTCTTCAGGAACTCGGTGGCGACAGGGGAGGTGTACCCGCTGGAATCGGAGGGTAGGGTTTGCGAGGAGTGCAAGACGGGGGATGTGGTGAGCATTGAGTTGAGTGAGAGCCGTCTGATTAATCACACGACGGGGAAGGAGTACACGTTGAAGCCGATCGGGGACGCGGGCCCCGTGATTAGGGCTGGTGGGATCTTTGCTTATGCTAGGGAGGCTGGGATGATTCCTACTTTGACTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

240

Amino Acids

25.2

Weight (kDa)

7.66

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	122 - 168	3.5e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	240
AclWI	GGATC	5 cut(s)	332, 345, 406, 482, 677
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	466
AcvI	CACGTG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	5 cut(s)	275, 362, 467, 512, 620
AfiI	CCNNNNNNNGG	2 cut(s)	250, 657
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	628
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	42, 283
AluI	AGCT	2 cut(s)	42, 283
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	27, 341
AlwI	GGATC	5 cut(s)	332, 345, 406, 482, 677
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	4 cut(s)	3, 226, 304, 646
ApaI	GGGCCC	1 cut(s)	650
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	98
AseI	ATTAAT	1 cut(s)	597
AspLEI	GCGC	9 cut(s)	189, 191, 298, 330, 383, 408, 418, 427, 472
AspS9I	GGNCC	3 cut(s)	253, 646, 647
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	4 cut(s)	37, 127, 172, 577
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	650
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	650
BbrPI	CACGTG	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	131, 217
BceAI	ACGGC	2 cut(s)	241, 573
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	27, 341
BfaI	CTAG	1 cut(s)	684
BfoI	RGCGCY	2 cut(s)	384, 428
BisI	GCNGC	6 cut(s)	12, 192, 195, 304, 435, 447
BlsI	GCNGC	6 cut(s)	13, 193, 196, 305, 436, 448
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	251, 342
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	253, 646, 647
BmiI	GGNNCC	4 cut(s)	255, 339, 648, 649
BmrFI	CCNGG	2 cut(s)	251, 342
BpuMI	CCSGG	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	223, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	608, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 657
Bse118I	RCCGGY	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	223, 249
BseGI	GGATG	2 cut(s)	565, 702
BseLI	CCNNNNNNNGG	2 cut(s)	250, 657
BsePI	GCGCGC	1 cut(s)	187
BseRI	GAGGAG	4 cut(s)	43, 46, 49, 557
BseSI	GKGCMC	1 cut(s)	650
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	2 cut(s)	427, 692
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	4 cut(s)	5, 228, 306, 648
BsiEI	CGRYCG	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	341, 419
BsiWI	CGTACG	1 cut(s)	465
BslFI	GGGAC	2 cut(s)	239, 653
BslI	CCNNNNNNNGG	2 cut(s)	250, 657
BsmAI	GTCTC	2 cut(s)	27, 341
BsmFI	GGGAC	2 cut(s)	239, 653
BsnI	GGCC	4 cut(s)	5, 228, 306, 648
BsoBI	CYCGRG	1 cut(s)	284
Bsp120I	GGGCCC	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	414, 650
Bsp143I	GATC	5 cut(s)	337, 398, 474, 633, 669
BspANI	GGCC	4 cut(s)	5, 228, 306, 648
BspLI	GGNNCC	4 cut(s)	255, 339, 648, 649
BspPI	GGATC	5 cut(s)	332, 345, 406, 482, 677
BsrBI	CCGCTC	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	223, 249
BssHII	GCGCGC	1 cut(s)	187
BssMI	GATC	5 cut(s)	337, 398, 474, 633, 669
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	170
BstC8I	GCNNGC	4 cut(s)	189, 410, 414, 646
BstDEI	CTNAG	1 cut(s)	717
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	565, 702
BstH2I	RGCGCY	2 cut(s)	384, 428
BstHHI	GCGC	9 cut(s)	189, 191, 298, 330, 383, 408, 418, 427, 472
BstKTI	GATC	5 cut(s)	340, 401, 477, 636, 672
BstMAI	GTCTC	2 cut(s)	27, 341
BstMBI	GATC	5 cut(s)	337, 398, 474, 633, 669
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 422, 424, 431, 443, 455, 546, 689
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	249, 340
BstSLI	GKGCMC	1 cut(s)	650
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	3 cut(s)	337, 474, 669
BstYI	RGATCY	3 cut(s)	337, 474, 669
BsuRI	GGCC	4 cut(s)	5, 228, 306, 648
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	565, 702
Cac8I	GCNNGC	4 cut(s)	189, 410, 414, 646
CfoI	GCGC	9 cut(s)	189, 191, 298, 330, 383, 408, 418, 427, 472
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	253, 646, 647
CseI	GACGC	2 cut(s)	17, 650
Csp6I	GTAC	5 cut(s)	274, 361, 466, 511, 619
CviQI	GTAC	5 cut(s)	274, 361, 466, 511, 619
DdeI	CTNAG	1 cut(s)	717
DpnI	GATC	5 cut(s)	339, 400, 476, 635, 671
DpnII	GATC	5 cut(s)	337, 398, 474, 633, 669
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	650
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	466
Eco72I	CACGTG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	650
FaiI	YATR	2 cut(s)	371, 681
FaqI	GGGAC	2 cut(s)	239, 653
FauI	CCCGC	4 cut(s)	319, 430, 522, 637
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	6 cut(s)	12, 192, 195, 304, 435, 447
FokI	GGATG	2 cut(s)	572, 709
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	6 cut(s)	12, 192, 195, 304, 435, 447
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	9 cut(s)	188, 190, 297, 329, 382, 407, 417, 426, 471
GluI	GCNGC	6 cut(s)	12, 192, 195, 304, 435, 447
GsaI	CCCAGC	2 cut(s)	431, 696
HaeII	RGCGCY	2 cut(s)	384, 428
HaeIII	GGCC	4 cut(s)	5, 228, 306, 648
HapII	CCGG	2 cut(s)	341, 419
HgaI	GACGC	2 cut(s)	17, 650
HhaI	GCGC	9 cut(s)	189, 191, 298, 330, 383, 408, 418, 427, 472
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	9 cut(s)	187, 189, 296, 328, 381, 406, 416, 425, 470
HinP1I	GCGC	9 cut(s)	187, 189, 296, 328, 381, 406, 416, 425, 470
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	3 cut(s)	461, 521, 700
HpaII	CCGG	2 cut(s)	341, 419
HphI	GGTGA	4 cut(s)	37, 127, 172, 577
Hpy166II	GTNNAC	3 cut(s)	241, 511, 621
Hpy188I	TCNGA	3 cut(s)	271, 526, 594
Hpy188III	TCNNGA	1 cut(s)	484
Hpy8I	GTNNAC	3 cut(s)	241, 511, 621
Hpy99I	CGWCG	3 cut(s)	11, 406, 610
HpyAV	CCTTC	2 cut(s)	187, 607
HpyCH4IV	ACGT	3 cut(s)	169, 237, 623
HpyCH4V	TGCA	1 cut(s)	549
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 422, 424, 431, 443, 455, 546, 689
HpyF3I	CTNAG	1 cut(s)	717
HpySE526I	ACGT	3 cut(s)	169, 237, 623
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	9 cut(s)	187, 189, 296, 328, 381, 406, 416, 425, 470
Kzo9I	GATC	5 cut(s)	337, 398, 474, 633, 669
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	3 cut(s)	169, 237, 623
MalI	GATC	5 cut(s)	339, 400, 476, 635, 671
MbiI	CCGCTC	1 cut(s)	434
MboI	GATC	5 cut(s)	337, 398, 474, 633, 669
MboII	GAAGA	2 cut(s)	469, 472
MflI	RGATCY	3 cut(s)	337, 474, 669
MhlI	GDGCHC	2 cut(s)	414, 650
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	285
MseI	TTAA	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	2 cut(s)	341, 419
MspR9I	CCNGG	2 cut(s)	251, 342
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	8 cut(s)	11, 422, 424, 431, 443, 455, 546, 689
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	5 cut(s)	337, 398, 474, 633, 669
NlaIV	GGNNCC	4 cut(s)	255, 339, 648, 649
PauI	GCGCGC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	2 cut(s)	629, 648
PfeI	GAWTC	2 cut(s)	521, 700
Pfl23II	CGTACG	1 cut(s)	465
PflFI	GACNNNGTC	1 cut(s)	352
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	6 cut(s)	13, 193, 196, 305, 436, 448
Ple19I	CGATCG	1 cut(s)	636
PleI	GAGTC	1 cut(s)	469
PmaCI	CACGTG	1 cut(s)	170
PmlI	CACGTG	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	170
PshBI	ATTAAT	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	170
PspFI	CCCAGC	2 cut(s)	427, 692
PspGI	CCWGG	1 cut(s)	249
PspLI	CGTACG	1 cut(s)	465
PspN4I	GGNNCC	4 cut(s)	255, 339, 648, 649
PspOMI	GGGCCC	1 cut(s)	646
PspPI	GGNCC	3 cut(s)	253, 646, 647
PsuI	RGATCY	3 cut(s)	337, 474, 669
PsyI	GACNNNGTC	1 cut(s)	352
PteI	GCGCGC	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	636
RsaI	GTAC	5 cut(s)	275, 362, 467, 512, 620
RsaNI	GTAC	5 cut(s)	274, 361, 466, 511, 619
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	6 cut(s)	12, 192, 195, 304, 435, 447
Sau3AI	GATC	5 cut(s)	337, 398, 474, 633, 669
Sau96I	GGNCC	3 cut(s)	253, 646, 647
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	2 cut(s)	251, 342
SduI	GDGCHC	2 cut(s)	414, 650
SetI	ASST	9 cut(s)	44, 53, 172, 179, 240, 246, 285, 510, 626
SgrAI	CRCCGGYG	1 cut(s)	418
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	1 cut(s)	98
SspMI	CTAG	1 cut(s)	684
StyD4I	CCNGG	2 cut(s)	249, 340
TaiI	ACGT	3 cut(s)	172, 240, 626
TasI	AATT	1 cut(s)	98
TatI	WGTACW	2 cut(s)	360, 618
TauI	GCSGC	5 cut(s)	14, 197, 306, 437, 449
TfiI	GAWTC	2 cut(s)	521, 700
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TseI	GCWGC	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	253
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	1 cut(s)	684
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.