Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006281

Physical Location & Seq

Genomic Coordinates Forward (+)

9281068 .. 9282782

Gene Structure 1715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTGATGCGGGGAGATCTTGATCTGAATTCAATGCAAGCATACGCTGGTTCTCTAGACGATGTTGTGAGGAAGACTATGCTCAGCCAGGAGATTATGTTTAAAAAACAGGTTCATGAACTCCATCATCTATATAGGATACAGAAGACACTGATGCAGAACCTTGGCAGGATGGAGTTTGGTAGATACAATTATAGCATAGCTGGTGCTGAGTTGAATCTTTTACCTCGGAGAAATTATGGAAGAGACGAACGTATGAACTTGTTAGAACGGTGCAAGGGTGTAGATGATAAGATTCAGCCGAGGAATCCTGAGCTTAAACTTCACACAGATCAATGCATTAGCTATATTGATCCAGCGGAGCTGAAGCTATCCCTGAGCATTCAAGAGGACAATAGGAAAGAGGGAGGTACTAAGAGGATTTGGTTTGATTTAGAAACTCATTCCTGCTCGCAACACATGATTGATTTAGAAGAACCGATTGAAAGGACATCAAATGAGGGCTTGGAACAGTCACCTTCTTTCAGCAGTACTGCTCCAATAACAAGCGCCAGGGGCACAGACAATTCAGAAGTTTCTGTCCTCTTTGATCTGATCATCTCGAGTAGTGTGAAGAAAAATCTATTCTTTCATTCTGCTGAGAGTAACCCTCATTTAGATGGCAGCGAGTGGAATCCTTTCAATCAAGGATTAGAAAAGCGTTCTGGTGGCATTGCAATTAACAATTCATCCACCAGGAGGCGGCATTTCGGTTCATATGAAACAGGGCTACTGGACCTTAACAAAATTCAGAATGATGATTCATCTTGTCTCTCAAATGATCGATACAGTAGCCCATTTTTCAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

284

Amino Acids

32.36

Weight (kDa)

5.88

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12120 AT1G62530 AT1G62530
fragaria_vesca	FvH4_5g00200 FvH4_5g00200 FvH4_5g00200 FvH4_5g00200 FvH4_5g00200 FvH4_5g00200 FvH4_5g00200
malus_domestica	MD04G1085400.v1.1 MD06G1062900.v1.1
prunus_persica	Prupe.5G074300_v2.0.a1
pyrus_communis	pycom04g07660 pycom06g06040 pycom06g06050
rosa_chinensis	RchiOBHm_Chr7g0202661
rosa_laevigata	RLG00000003583
rosa_multiflora	Rmu_sc0002365.1_g000023
rosa_roxburghii	Rroxscaffold_3G00254430
rosa_rugosa	Rorug07G0071500 Rorug07G0071600
rosa_samantha	Rh7AG199500 Rh7BG200300 Rh7CG211000 Rh7DG206400
rosa_wichuraiana	Rw7G017470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	10, 359, 742
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	28, 786
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	412, 532
AfiI	CCNNNNNNNGG	2 cut(s)	738, 741
AgsI	TTSAA	6 cut(s)	33, 217, 386, 485, 682, 844
AjnI	CCWGG	3 cut(s)	87, 551, 734
AluBI	AGCT	6 cut(s)	203, 316, 345, 364, 370, 849
AluI	AGCT	6 cut(s)	203, 316, 345, 364, 370, 849
Alw26I	GTCTC	2 cut(s)	240, 815
AlwI	GGATC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	601
ApeKI	GCWGC	1 cut(s)	663
ApoI	RAATTY	2 cut(s)	28, 786
Asp700I	GAANNNNTTC	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	775
AsuHPI	GGTGA	1 cut(s)	507
AvaI	CYCGRG	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	775
BaeGI	GKGCMC	1 cut(s)	560
BbsI	GAAGAC	2 cut(s)	80, 152
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	3 cut(s)	132, 166, 653
BciT130I	CCWGG	3 cut(s)	89, 553, 736
BciVI	GTATCC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	594
BcoDI	GTCTC	2 cut(s)	240, 815
BfaI	CTAG	2 cut(s)	56, 850
BfoI	RGCGCY	1 cut(s)	552
BfuI	GTATCC	1 cut(s)	132
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	2 cut(s)	664, 743
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	2 cut(s)	665, 744
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	3 cut(s)	89, 553, 736
Bme18I	GGWCC	1 cut(s)	775
BmeT110I	CYCGRG	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	775
BmrFI	CCNGG	3 cut(s)	89, 553, 736
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	2 cut(s)	80, 152
BplI	GAGNNNNNCTC	2 cut(s)	634, 666
Bpu10I	CCTNAGC	2 cut(s)	312, 377
Bpu1102I	GCTNAGC	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	823
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	163, 227, 302, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 741
Bse1I	ACTGG	1 cut(s)	777
Bse3DI	GCAATG	1 cut(s)	711
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	3 cut(s)	89, 553, 736
BseCI	ATCGAT	1 cut(s)	823
BseDI	CCNNGG	4 cut(s)	163, 227, 302, 552
BseGI	GGATG	2 cut(s)	177, 728
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	738, 741
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	5 cut(s)	97, 201, 303, 368, 630
BseNI	ACTGG	1 cut(s)	777
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	675
BshVI	ATCGAT	1 cut(s)	823
BsiHKCI	CYCGRG	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	738, 741
BsmAI	GTCTC	2 cut(s)	240, 815
BsmBI	CGTCTC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	381
BsoBI	CYCGRG	1 cut(s)	601
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	7 cut(s)	16, 22, 331, 352, 589, 594, 820
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	3 cut(s)	10, 359, 742
BspCNI	CTCAG	5 cut(s)	96, 202, 304, 369, 631
BspDI	ATCGAT	1 cut(s)	823
BspHI	TCATGA	1 cut(s)	115
BspPI	GGATC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	777
BssECI	CCNNGG	4 cut(s)	163, 227, 302, 552
BssMI	GATC	7 cut(s)	16, 22, 331, 352, 589, 594, 820
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	3 cut(s)	89, 553, 736
Bst4CI	ACNGT	3 cut(s)	273, 513, 830
Bst6I	CTCTTC	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	39, 452
BstDEI	CTNAG	6 cut(s)	83, 210, 312, 377, 414, 639
BstF5I	GGATG	2 cut(s)	177, 728
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	7 cut(s)	19, 25, 334, 355, 592, 597, 823
BstMAI	GTCTC	2 cut(s)	240, 815
BstMBI	GATC	7 cut(s)	16, 22, 331, 352, 589, 594, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstNI	CCWGG	3 cut(s)	89, 553, 736
BstSCI	CCNGG	3 cut(s)	87, 551, 734
BstSLI	GKGCMC	1 cut(s)	560
BstV1I	GCAGC	1 cut(s)	675
BstV2I	GAAGAC	2 cut(s)	80, 152
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	823
BsuI	GTATCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	823
BtsCI	GGATG	2 cut(s)	177, 728
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	39, 452
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	775
ClaI	ATCGAT	1 cut(s)	823
Csp6I	GTAC	2 cut(s)	411, 531
CviAII	CATG	2 cut(s)	116, 460
CviQI	GTAC	2 cut(s)	411, 531
DdeI	CTNAG	6 cut(s)	83, 210, 312, 377, 414, 639
DpnI	GATC	7 cut(s)	18, 24, 333, 354, 591, 596, 822
DpnII	GATC	7 cut(s)	16, 22, 331, 352, 589, 594, 820
DraI	TTTAAA	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	775
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	3 cut(s)	87, 551, 734
EcoT14I	CCWWGG	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	2 cut(s)	119, 463
FatI	CATG	2 cut(s)	115, 459
FauI	CCCGC	1 cut(s)	3
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	2 cut(s)	664, 743
FokI	GGATG	2 cut(s)	184, 715
Fsp4HI	GCNGC	2 cut(s)	664, 743
FspBI	CTAG	2 cut(s)	56, 850
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	2 cut(s)	664, 743
HaeII	RGCGCY	1 cut(s)	552
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	2 cut(s)	119, 463
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HinfI	GANTC	5 cut(s)	217, 295, 307, 673, 800
HphI	GGTGA	1 cut(s)	507
Hpy188I	TCNGA	5 cut(s)	27, 231, 571, 594, 792
Hpy188III	TCNNGA	6 cut(s)	20, 56, 116, 311, 386, 601
HpyAV	CCTTC	1 cut(s)	528
HpyCH4III	ACNGT	3 cut(s)	273, 513, 830
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	5 cut(s)	37, 157, 276, 339, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpyF3I	CTNAG	6 cut(s)	83, 210, 312, 377, 414, 639
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	119, 463
HspAI	GCGC	1 cut(s)	549
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	7 cut(s)	16, 22, 331, 352, 589, 594, 820
LmnI	GCTCC	2 cut(s)	361, 541
Lsp1109I	GCAGC	1 cut(s)	675
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	2 cut(s)	56, 850
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	2 cut(s)	513, 644
MalI	GATC	7 cut(s)	18, 24, 333, 354, 591, 596, 822
MboI	GATC	7 cut(s)	16, 22, 331, 352, 589, 594, 820
MboII	GAAGA	5 cut(s)	85, 157, 255, 485, 625
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	7 cut(s)	28, 190, 235, 565, 717, 724, 786
Mph1103I	ATGCAT	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	677
MseI	TTAA	4 cut(s)	102, 318, 720, 780
MslI	CAYNNNNRTG	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	359
MspR9I	CCNGG	3 cut(s)	89, 553, 736
Mva1269I	GAATGC	1 cut(s)	381
MvaI	CCWGG	3 cut(s)	89, 553, 736
MwoI	GCNNNNNNNGC	1 cut(s)	555
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	7 cut(s)	16, 22, 331, 352, 589, 594, 820
NlaIII	CATG	2 cut(s)	119, 463
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	513
NsiI	ATGCAT	1 cut(s)	341
PaeR7I	CTCGAG	1 cut(s)	601
PagI	TCATGA	1 cut(s)	115
PctI	GAATGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	5 cut(s)	217, 295, 307, 673, 800
PkrI	GCNGC	2 cut(s)	665, 744
Psp6I	CCWGG	3 cut(s)	87, 551, 734
PspGI	CCWGG	3 cut(s)	87, 551, 734
PspPI	GGNCC	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	2 cut(s)	412, 532
RsaNI	GTAC	2 cut(s)	411, 531
RseI	CAYNNNNRTG	1 cut(s)	657
SaqAI	TTAA	4 cut(s)	102, 318, 720, 780
SatI	GCNGC	2 cut(s)	664, 743
Sau3AI	GATC	7 cut(s)	16, 22, 331, 352, 589, 594, 820
Sau96I	GGNCC	1 cut(s)	775
ScaI	AGTACT	1 cut(s)	532
ScrFI	CCNGG	3 cut(s)	89, 553, 736
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	775
SlaI	CTCGAG	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
Sse9I	AATT	7 cut(s)	28, 190, 235, 565, 717, 724, 786
SsiI	CCGC	3 cut(s)	10, 359, 742
SspMI	CTAG	2 cut(s)	56, 850
StyD4I	CCNGG	3 cut(s)	87, 551, 734
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	273, 513, 830
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	602, 823
TasI	AATT	7 cut(s)	28, 190, 235, 565, 717, 724, 786
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	5 cut(s)	217, 295, 307, 673, 800
Tru1I	TTAA	4 cut(s)	102, 318, 720, 780
Tru9I	TTAA	4 cut(s)	102, 318, 720, 780
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	1 cut(s)	663
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	8 cut(s)	104, 132, 272, 620, 717, 744, 774, 792
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	2 cut(s)	28, 786
XbaI	TCTAGA	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	2 cut(s)	56, 850
ZrmI	AGTACT	1 cut(s)	532
Zsp2I	ATGCAT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.