Rh7BG200300

Plant protein of unknown function (DUF863)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006281
Physical Location & Seq
Forward (+)
16533395 .. 16537172
3778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG200300.1

Sequence Viewer

Length: 1620 bp
ATGCGTAGTTCTCATATGTGCGCTTGTGCTTGTCTATCAAGTTACTTGACGCAATATATATGGCAGGACTTGTTTGAAGGACGCAAGAGTACGTGTGATAAGATTCAGCCGAGGCCTCTTGGTCTTAAGCATCCCTTAGATCCGCTCAACAAACATATTGATCCAGCGGAGCTGAAGCTTTCCCTGAGAATTCAAGAGGACAGCAGGAGGGAGGGAAGCACTAAGAGAAATTGGTTTGGTGTAGGATCTCATTCTTCCTCACCCATTGTGATTGATTTAGAGGAAGATGAAAGTGACTGGAATCCTTTCAATAAAGGATTAAATAGGTGTTCTGGTGGCATCTCAATTAACAAGTTATCCACCAGGAGCCAACAGTTCAGTTCATATGAAGCAGGGCTTCTGGACCTTAATAAAACCCAGCCCGATGATTCATCTTGTCTCTCCAATGATCCTACGGTAGTCCATCCTTCAACAGCCAGCTCATCGCATGCTTTCCGTGGGTTAGCTGGCAAGATAAAAGAGGGCACTGTTTGTTTCACTGCTGAGAAAAAGGAACATGGTGGAAATTTTTCTTCCTTGAATTCCACCAGGGAAAATGAGAAAACAGAATACCTGGGCAGCAGTTTGGAAGTTGATGGATTTAGAGCAAGTGAAATGGACCGTGCAAGTTTGGAGGCAGCTGTGTCTAGATCCAAATCAGACGTTTGTGAAGCAGTTGGCTGCAACAGCACTGACCCCAAAAATGGAAGTGATGGGTTCATCCTGAAACTTCTAAACAGTCGAACTCATTCATGTGCAGCTTCTAAACAAGCAAACTCGGAGAACACCAAAGTAGAAGACCCTGTATTTCCATATTCTGGTCATAGTAAAAAAACAGATCAAGATGGACATGGCAATATATCTTCTTCTGCAAGTAAGCCGTGCTGCATTGGTGATAATGATTCCAGTAGTGTGAAGACCATACTATCTGAGGTTGAGTTCGGAAACTCAAACCCTTTTTCTTCCGATCAGTTTTCAGCGACACATGTAGGATCTCAAGTTTCGGAAACTTTATTGGGTGAGCAGGACCAAAGATCTTCCGACAGCAGTGAATCTAAACACAAATGCATCAACAGGGAAGAATTCTCAGCTGAAGTGGATGCTTTGACCAGCGAGGCAGCTGAAGCACTTCTTGGAATGTCATTGGAGAGCTCCTTTTGTTATCAAGATTCTGCTGGCAAAGTGGGAGAATCAAATAAGATCGAAAAGGAGAGTGAGAAACCACAGTATTCTTGTGATTTTTTTGAGTTAATGACACTAACCCTTATGGAGAGCAATGTGGATGACTATTCTGTGTCATCAAATCCTTCTGAAGTAAGTTTCACAGAAAATAAGGATGTCGGTTTAAAGTTCAGAAGGGGAAGGAGATTGAAAGATTTTCAGAAGGACATACTTCCTGGTCTGGCATCTCTTTCCAGACATGAAATTCGCGAAGATATAAACATTATGGAGGGAGTTTTAAGGTCAAGAGAGTACAAAAGATTACAAGCCAAAATGGCTGATGGTCACGGCTGGTGTACTCCCGTCAGAAACAAACGTTCGAGACTGAACCATGTTACGCGGAGGAAAAAATTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF863

Protein Analysis

539

Amino Acids

59.58

Weight (kDa)

5.98

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF863 PF05904 409 - 502 1e-21 Plant protein of unknown function (DUF863)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 857
AccBSI CCGCTC 1 cut(s) 145
AccII CGCG 2 cut(s) 1470, 1600
AciI CCGC 3 cut(s) 143, 167, 1600
AclI AACGTT 1 cut(s) 1576
AclWI GGATC 6 cut(s) 134, 155, 253, 443, 684, 1039
AcsI RAATTY 6 cut(s) 189, 565, 580, 1121, 1464, 1610
AcuI CTGAAG 4 cut(s) 194, 1152, 1182, 1371
AfaI GTAC 3 cut(s) 91, 1514, 1558
AfiI CCNNNNNNNGG 2 cut(s) 743, 857
AflII CTTAAG 1 cut(s) 125
AflIII ACRYGT 2 cut(s) 92, 1024
AgsI TTSAA 6 cut(s) 77, 194, 310, 471, 580, 1411
AjnI CCWGG 4 cut(s) 362, 587, 612, 1435
AjuI GAANNNNNNNTTGG 2 cut(s) 1155, 1187
AluBI AGCT 9 cut(s) 172, 178, 480, 506, 680, 800, 1130, 1160, 1191
AluI AGCT 9 cut(s) 172, 178, 480, 506, 680, 800, 1130, 1160, 1191
Alw21I GWGCWC 1 cut(s) 1193
Alw26I GTCTC 2 cut(s) 443, 1576
AlwI GGATC 6 cut(s) 134, 155, 253, 443, 684, 1039
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 6 cut(s) 618, 677, 720, 797, 924, 1157
ApoI RAATTY 6 cut(s) 189, 565, 580, 1121, 1464, 1610
ArsI GACNNNNNNTTYG 2 cut(s) 1449, 1481
Asp700I GAANNNNTTC 5 cut(s) 305, 568, 787, 1167, 1610
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 3 cut(s) 403, 658, 1066
AsuHPI GGTGA 3 cut(s) 252, 944, 1070
AvaII GGWCC 3 cut(s) 403, 658, 1066
BaeGI GKGCMC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 1193
BbsI GAAGAC 2 cut(s) 843, 962
Bbv12I GWGCWC 1 cut(s) 1193
BbvI GCAGC 6 cut(s) 630, 689, 707, 809, 911, 1169
BccI CCATC 5 cut(s) 471, 629, 746, 878, 1535
BceAI ACGGC 2 cut(s) 904, 1564
BciT130I CCWGG 4 cut(s) 364, 589, 614, 1437
BcoDI GTCTC 2 cut(s) 443, 1576
BfaI CTAG 1 cut(s) 687
BfrI CTTAAG 1 cut(s) 125
BglI GCCNNNNNGGC 1 cut(s) 1535
BglII AGATCT 1 cut(s) 1073
BisI GCNGC 6 cut(s) 619, 678, 721, 798, 925, 1158
BlsI GCNGC 6 cut(s) 620, 679, 722, 799, 926, 1159
Bme1390I CCNGG 4 cut(s) 364, 589, 614, 1437
Bme18I GGWCC 3 cut(s) 403, 658, 1066
BmgT120I GGNCC 3 cut(s) 403, 658, 1066
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 4 cut(s) 364, 589, 614, 1437
BmsI GCATC 5 cut(s) 139, 348, 1116, 1129, 1454
BpiI GAAGAC 2 cut(s) 843, 962
BpuEI CTTGAG 1 cut(s) 1020
BsaAI YACGTR 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 694
BsaJI CCNNGG 4 cut(s) 110, 496, 588, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 743, 857
Bse1I ACTGG 2 cut(s) 302, 945
Bse3DI GCAATG 1 cut(s) 1321
Bse8I GATNNNNATC 1 cut(s) 694
BseBI CCWGG 4 cut(s) 364, 589, 614, 1437
BseDI CCNNGG 4 cut(s) 110, 496, 588, 613
BseGI GGATG 6 cut(s) 130, 463, 759, 1144, 1327, 1381
BseJI GATNNNNATC 1 cut(s) 694
BseLI CCNNNNNNNGG 2 cut(s) 743, 857
BseMI GCAATG 1 cut(s) 1321
BseMII CTCAG 4 cut(s) 176, 534, 960, 1140
BseNI ACTGG 2 cut(s) 302, 945
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 6 cut(s) 630, 689, 707, 809, 911, 1169
BseYI CCCAGC 1 cut(s) 417
BsgI GTGCAG 1 cut(s) 816
Bsh1236I CGCG 2 cut(s) 1470, 1600
BshFI GGCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 1193
BslI CCNNNNNNNGG 2 cut(s) 743, 857
BsmAI GTCTC 2 cut(s) 443, 1576
BsnI GGCC 1 cut(s) 115
Bsp1286I GDGCHC 2 cut(s) 527, 1193
Bsp68I TCGCGA 1 cut(s) 1470
BspACI CCGC 3 cut(s) 143, 167, 1600
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 4 cut(s) 177, 535, 961, 1139
BspFNI CGCG 2 cut(s) 1470, 1600
BspLI GGNNCC 1 cut(s) 368
BspPI GGATC 6 cut(s) 134, 155, 253, 443, 684, 1039
BspTI CTTAAG 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 1321
BsrI ACTGG 2 cut(s) 302, 945
BssECI CCNNGG 4 cut(s) 110, 496, 588, 613
Bst2UI CCWGG 4 cut(s) 364, 589, 614, 1437
Bst4CI ACNGT 6 cut(s) 375, 457, 529, 662, 779, 1266
BstAFI CTTAAG 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 4 cut(s) 478, 489, 508, 1216
BstDEI CTNAG 6 cut(s) 136, 185, 222, 543, 969, 1126
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 6 cut(s) 130, 463, 759, 1144, 1327, 1381
BstFNI CGCG 2 cut(s) 1470, 1600
BstHHI GCGC 1 cut(s) 23
BstMAI GTCTC 2 cut(s) 443, 1576
BstMWI GCNNNNNNNGC 3 cut(s) 726, 1163, 1535
BstNI CCWGG 4 cut(s) 364, 589, 614, 1437
BstNSI RCATGY 2 cut(s) 491, 1028
BstSCI CCNGG 4 cut(s) 362, 587, 612, 1435
BstSLI GKGCMC 1 cut(s) 527
BstUI CGCG 2 cut(s) 1470, 1600
BstV1I GCAGC 6 cut(s) 630, 689, 707, 809, 911, 1169
BstV2I GAAGAC 2 cut(s) 843, 962
BstX2I RGATCY 5 cut(s) 139, 245, 689, 1031, 1073
BstYI RGATCY 5 cut(s) 139, 245, 689, 1031, 1073
BsuRI GGCC 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 496
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 6 cut(s) 130, 463, 759, 1144, 1327, 1381
BtsI GCAGTG 2 cut(s) 537, 1093
BtsIMutI CAGTG 4 cut(s) 525, 537, 729, 1093
BtuMI TCGCGA 1 cut(s) 1470
Cac8I GCNNGC 4 cut(s) 478, 489, 508, 1216
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 403, 658, 1066
CseI GACGC 2 cut(s) 58, 90
Csp6I GTAC 3 cut(s) 90, 1513, 1557
CviAII CATG 7 cut(s) 488, 557, 792, 890, 1025, 1460, 1592
CviQI GTAC 3 cut(s) 90, 1513, 1557
DdeI CTNAG 6 cut(s) 136, 185, 222, 543, 969, 1126
DraI TTTAAA 1 cut(s) 1386
Ecl136II GAGCTC 1 cut(s) 1191
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 1193
Eco47I GGWCC 3 cut(s) 403, 658, 1066
Eco53kI GAGCTC 1 cut(s) 1191
Eco57I CTGAAG 4 cut(s) 194, 1152, 1182, 1371
EcoICRI GAGCTC 1 cut(s) 1191
EcoRI GAATTC 3 cut(s) 189, 580, 1121
EcoRII CCWGG 4 cut(s) 362, 587, 612, 1435
EcoT22I ATGCAT 1 cut(s) 1109
EcoT38I GRGCYC 1 cut(s) 1193
FaeI CATG 7 cut(s) 491, 560, 795, 893, 1028, 1463, 1595
FalI AAGNNNNNCTT 6 cut(s) 119, 151, 381, 413, 1155, 1187
FatI CATG 7 cut(s) 487, 556, 791, 889, 1024, 1459, 1591
FauNDI CATATG 2 cut(s) 15, 385
Fnu4HI GCNGC 6 cut(s) 619, 678, 721, 798, 925, 1158
FokI GGATG 6 cut(s) 117, 450, 746, 1151, 1334, 1388
FriOI GRGCYC 1 cut(s) 1193
Fsp4HI GCNGC 6 cut(s) 619, 678, 721, 798, 925, 1158
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 22
GluI GCNGC 6 cut(s) 619, 678, 721, 798, 925, 1158
GsaI CCCAGC 1 cut(s) 421
HaeIII GGCC 1 cut(s) 115
HgaI GACGC 2 cut(s) 58, 90
HhaI GCGC 1 cut(s) 23
Hin1II CATG 7 cut(s) 491, 560, 795, 893, 1028, 1463, 1595
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 7 cut(s) 103, 301, 428, 941, 1091, 1208, 1229
HphI GGTGA 3 cut(s) 252, 944, 1070
Hpy166II GTNNAC 1 cut(s) 1557
Hpy8I GTNNAC 1 cut(s) 1557
HpyAV CCTTC 6 cut(s) 71, 477, 1356, 1389, 1395, 1417
HpyCH4III ACNGT 6 cut(s) 375, 457, 529, 662, 779, 1266
HpyCH4IV ACGT 3 cut(s) 92, 702, 1576
HpyCH4V TGCA 6 cut(s) 665, 723, 797, 911, 927, 1107
HpyF10VI GCNNNNNNNGC 3 cut(s) 726, 1163, 1535
HpyF3I CTNAG 6 cut(s) 136, 185, 222, 543, 969, 1126
HpySE526I ACGT 3 cut(s) 92, 702, 1576
Hsp92II CATG 7 cut(s) 491, 560, 795, 893, 1028, 1463, 1595
HspAI GCGC 1 cut(s) 21
LmnI GCTCC 3 cut(s) 169, 366, 1196
Lsp1109I GCAGC 6 cut(s) 630, 689, 707, 809, 911, 1169
LweI GCATC 5 cut(s) 139, 348, 1116, 1129, 1454
MaeI CTAG 1 cut(s) 687
MaeII ACGT 3 cut(s) 92, 702, 1576
MaeIII GTNAC 4 cut(s) 41, 293, 1544, 1594
MbiI CCGCTC 1 cut(s) 145
MflI RGATCY 5 cut(s) 139, 245, 689, 1031, 1073
MhlI GDGCHC 2 cut(s) 527, 1193
MluCI AATT 8 cut(s) 189, 229, 345, 565, 580, 1121, 1464, 1610
MmeI TCCRAC 1 cut(s) 1104
Mph1103I ATGCAT 1 cut(s) 1109
MroXI GAANNNNTTC 5 cut(s) 305, 568, 787, 1167, 1610
MseI TTAA 7 cut(s) 126, 320, 348, 408, 1289, 1385, 1499
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 4 cut(s) 167, 680, 1130, 1160
MspCI CTTAAG 1 cut(s) 125
MspR9I CCNGG 4 cut(s) 364, 589, 614, 1437
MvaI CCWGG 4 cut(s) 364, 589, 614, 1437
MvnI CGCG 2 cut(s) 1470, 1600
MwoI GCNNNNNNNGC 3 cut(s) 726, 1163, 1535
NdeI CATATG 2 cut(s) 15, 385
NlaIII CATG 7 cut(s) 491, 560, 795, 893, 1028, 1463, 1595
NlaIV GGNNCC 1 cut(s) 368
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 293, 1544
NruI TCGCGA 1 cut(s) 1470
NsiI ATGCAT 1 cut(s) 1109
NspI RCATGY 2 cut(s) 491, 1028
PaeI GCATGC 1 cut(s) 491
PceI AGGCCT 1 cut(s) 115
PciI ACATGT 1 cut(s) 1024
PdmI GAANNNNTTC 5 cut(s) 305, 568, 787, 1167, 1610
PfeI GAWTC 7 cut(s) 103, 301, 428, 941, 1091, 1208, 1229
PflMI CCANNNNNTGG 1 cut(s) 857
PkrI GCNGC 6 cut(s) 620, 679, 722, 799, 926, 1159
Ppu21I YACGTR 1 cut(s) 93
PscI ACATGT 1 cut(s) 1024
Psp124BI GAGCTC 1 cut(s) 1193
Psp1406I AACGTT 1 cut(s) 1576
Psp6I CCWGG 4 cut(s) 362, 587, 612, 1435
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 4 cut(s) 362, 587, 612, 1435
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 3 cut(s) 403, 658, 1066
PsuI RGATCY 5 cut(s) 139, 245, 689, 1031, 1073
PvuII CAGCTG 3 cut(s) 680, 1130, 1160
RruI TCGCGA 1 cut(s) 1470
RsaI GTAC 3 cut(s) 91, 1514, 1558
RsaNI GTAC 3 cut(s) 90, 1513, 1557
RseI CAYNNNNRTG 1 cut(s) 792
SacI GAGCTC 1 cut(s) 1193
SaqAI TTAA 7 cut(s) 126, 320, 348, 408, 1289, 1385, 1499
SatI GCNGC 6 cut(s) 619, 678, 721, 798, 925, 1158
Sau96I GGNCC 3 cut(s) 403, 658, 1066
ScrFI CCNGG 4 cut(s) 364, 589, 614, 1437
SduI GDGCHC 2 cut(s) 527, 1193
SfaNI GCATC 5 cut(s) 139, 348, 1116, 1129, 1454
SinI GGWCC 3 cut(s) 403, 658, 1066
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 2 cut(s) 125, 1035
SmoI CTYRAG 2 cut(s) 125, 1035
SphI GCATGC 1 cut(s) 491
Sse9I AATT 8 cut(s) 189, 229, 345, 565, 580, 1121, 1464, 1610
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 3 cut(s) 143, 167, 1600
SspMI CTAG 1 cut(s) 687
SstI GAGCTC 1 cut(s) 1193
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 4 cut(s) 362, 587, 612, 1435
TaaI ACNGT 6 cut(s) 375, 457, 529, 662, 779, 1266
TaiI ACGT 3 cut(s) 95, 705, 1579
TaqI TCGA 3 cut(s) 781, 1242, 1580
TasI AATT 8 cut(s) 189, 229, 345, 565, 580, 1121, 1464, 1610
TatI WGTACW 2 cut(s) 1512, 1556
TfiI GAWTC 7 cut(s) 103, 301, 428, 941, 1091, 1208, 1229
Tru1I TTAA 7 cut(s) 126, 320, 348, 408, 1289, 1385, 1499
Tru9I TTAA 7 cut(s) 126, 320, 348, 408, 1289, 1385, 1499
TscAI CASTG 4 cut(s) 532, 544, 736, 1093
TseFI GTSAC 2 cut(s) 293, 1544
TseI GCWGC 6 cut(s) 618, 677, 720, 797, 924, 1157
Tsp45I GTSAC 2 cut(s) 293, 1544
TspDTI ATGAA 7 cut(s) 303, 372, 402, 420, 748, 780, 1476
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 4 cut(s) 532, 544, 736, 1093
Van91I CCANNNNNTGG 1 cut(s) 857
Vha464I CTTAAG 1 cut(s) 125
VpaK11BI GGWCC 3 cut(s) 403, 658, 1066
XapI RAATTY 6 cut(s) 189, 565, 580, 1121, 1464, 1610
XbaI TCTAGA 1 cut(s) 686
XceI RCATGY 2 cut(s) 491, 1028
XmnI GAANNNNTTC 5 cut(s) 305, 568, 787, 1167, 1610
XspI CTAG 1 cut(s) 687
Zsp2I ATGCAT 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.