Rh7AG199500

Plant protein of unknown function (DUF863)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006281
Physical Location & Seq
Forward (+)
18040021 .. 18042483
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG199500.1

Sequence Viewer

Length: 1812 bp
ATGTTGATGCGAGGAGATTTTGATCTGAATTCGATACAACCGTATACTGGTTCTCTGAACGATGTCTTGAGGAACACTATGCTCAACCAGGAGCTGGTATTTAAAGACCAGGTTCATGAACTCCACCATCTATACAGGACACAGAAGATGCTGATGCAGAATCTCGACAGAAAAGAGTATCATAGATACAATTTCAGCAAGGCGAGTGCTCAGTCAAATCTGTCACGTTGGACAAATTCTATGATAGATGAACCAAGGGACTTGTTTGAAGGACGCAAGAGTACATGTGATAAGATTCAGCCGAGGCCTCTTGGTCTTAAGCATCCCTTAGATCCGCTCAACAAACATATTGATCCAGCGGAGCTGAAGCTTTCCCTGAGAATTCAAGAGGACAGCAGGAGGGAGGGAAGCACTAAGAGAAATTGGTTTGGTGTAGGATCTAATTCTTCCTCACCCATTGTGATTGATTTAGAGGAAGATGAAAGTGACTGGAATCCTTTCAATAAAGGATTAAATAGGTGTTCTGGTGGCATCTCAATTAACAAGTTATCCACCAGGAGCCAACAGTTCAGTTCATATGAAGCAGGGCTTCTGGACCTTAATAAAACCCAGCCCGATGATTCATCTTGTCTCTCCAATGATCCTACGGTAGTCCATCCTTCAACAGCCAGCTCATCGCATGCTTTTCGTGGGTTAGCTGGCAAAATAAAAGAGGGCACTGTTTGTTTCACTGCTGAGAAAAAGGAACATGGTGGAAATTTTTCTTCCTTGAATTCCACCAGGGAAAATGAGAAAACAGAATACCTGGGCAGGAGTTTGGAAGTTGATGGATTTAGAGCAAGTGAAATGGACCGTGCAAGTTTGGAGGCAGCTGTGTCTAGATCCAAATCAGACGTTTGTGAAGCAGTTGGCTGCAACAGCAATGACCCCAAAAATGGAAGTGATGGGTTCATCCTCAAACTTCTAAACAGTCGAACTCATTCATGTGCAGCTTCTAAACAAGCAAACTCGGAGAACACCAAAGTAGAAGACCCTGTATTTCCATATTCTGGTCATAGTAAAAAAACAGATCAAGATGGACATGGCAATATATCTTCTTCTGCAAGTAAGCCGTGCTGCATTGGTGATAATGATTCCAGTAGTGTGAAGACCATACTATCTGAGGTTGAGTTCGGAAACTCAAACCCTTTTTCTTCCGATCAGTTTTCAGCGACACAAGTAGGATCTCAAGTTTCGGAAACTTTATTGGGTGAGCAGGACCAAAGATCTTCCGACAGCAGTGAATCTAAACACAAATACATCAACAGGGAAGAAGAATCAGCTGAAGTGGATGCTTTGACCAGCGAGGCAGTTGAAGCACTTCTTGGAATGTCATTGGAGAGCTCCTTTTGTTATCAAGATTCTGCTGGCAAAGTGGGAGAATCAAATAAGGTCGAAAAGGAGAGTGAGAAACCACAGTATTCTTGTGATTTTTTTGAGTTAATGACACTAACCCTTATGGAGAGCAATGTGGATGACTATTCTGTGTCATCAAATCCTTCTGAAGTAGGTTTCACAGAAAATAAGGATGTCGGTTTAAAGTTCAGAAGGGGAAGGAGATTGAAAGATTTTCAGAAGGACATACTTCCCGGTCTGGCATCTCTTTCCAGACATGAAATTCGCGAAGATATAAACATTATGGAGGGAGTTTTAAGGTCAAGAGAGTACAAAAGATTACAAGCCAAAATGGCTGATGGTCACGGCTGGTGTACTCCTGTCAGAAACAAACGTTCGAGACTGAACCATGTTACACGGAGGAAAAAGTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF863

Protein Analysis

603

Amino Acids

67.43

Weight (kDa)

6.04

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF863 PF05904 474 - 566 3.3e-21 Plant protein of unknown function (DUF863)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 94, 1049
AccBSI CCGCTC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 44
AccII CGCG 1 cut(s) 1662
AciI CCGC 2 cut(s) 335, 359
AclI AACGTT 1 cut(s) 1768
AclWI GGATC 6 cut(s) 326, 347, 445, 635, 876, 1231
AcsI RAATTY 6 cut(s) 28, 235, 381, 757, 772, 1656
AcuI CTGAAG 3 cut(s) 386, 1344, 1563
AfaI GTAC 3 cut(s) 283, 1706, 1750
AfiI CCNNNNNNNGG 4 cut(s) 47, 94, 935, 1049
AflII CTTAAG 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 7 cut(s) 269, 386, 502, 663, 772, 1355, 1603
AjnI CCWGG 5 cut(s) 87, 108, 554, 779, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 1347, 1379
AluBI AGCT 9 cut(s) 94, 364, 370, 672, 698, 872, 992, 1322, 1383
AluI AGCT 9 cut(s) 94, 364, 370, 672, 698, 872, 992, 1322, 1383
Alw21I GWGCWC 2 cut(s) 211, 1385
Alw26I GTCTC 2 cut(s) 635, 1768
AlwI GGATC 6 cut(s) 326, 347, 445, 635, 876, 1231
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 4 cut(s) 869, 912, 989, 1116
ApoI RAATTY 6 cut(s) 28, 235, 381, 757, 772, 1656
ArsI GACNNNNNNTTYG 2 cut(s) 1641, 1673
Asp700I GAANNNNTTC 5 cut(s) 497, 760, 979, 1359, 1802
AspS9I GGNCC 3 cut(s) 595, 850, 1258
AsuC2I CCSGG 1 cut(s) 1629
AsuHPI GGTGA 3 cut(s) 444, 1136, 1262
AvaII GGWCC 3 cut(s) 595, 850, 1258
BaeGI GKGCMC 1 cut(s) 719
BaeI ACNNNNGTAYC 2 cut(s) 26, 59
BanII GRGCYC 1 cut(s) 1385
BbsI GAAGAC 2 cut(s) 1035, 1154
Bbv12I GWGCWC 2 cut(s) 211, 1385
BbvI GCAGC 4 cut(s) 881, 899, 1001, 1103
BccI CCATC 6 cut(s) 135, 663, 821, 938, 1070, 1727
BceAI ACGGC 2 cut(s) 1096, 1756
BcgI CGANNNNNNTGC 2 cut(s) 668, 702
BciT130I CCWGG 5 cut(s) 89, 110, 556, 781, 806
BcnI CCSGG 1 cut(s) 1629
BcoDI GTCTC 2 cut(s) 635, 1768
BfaI CTAG 1 cut(s) 879
BfrI CTTAAG 1 cut(s) 317
BglI GCCNNNNNGGC 1 cut(s) 1727
BglII AGATCT 1 cut(s) 1265
BisI GCNGC 4 cut(s) 870, 913, 990, 1117
BlsI GCNGC 4 cut(s) 871, 914, 991, 1118
Bme1390I CCNGG 6 cut(s) 89, 110, 556, 781, 806, 1629
Bme18I GGWCC 3 cut(s) 595, 850, 1258
BmgT120I GGNCC 3 cut(s) 595, 850, 1258
BmiI GGNNCC 1 cut(s) 560
BmrFI CCNGG 6 cut(s) 89, 110, 556, 781, 806, 1629
BmsI GCATC 6 cut(s) 138, 144, 331, 540, 1321, 1646
BpiI GAAGAC 2 cut(s) 1035, 1154
BpuEI CTTGAG 2 cut(s) 88, 1212
BpuMI CCSGG 1 cut(s) 1629
BsaBI GATNNNNATC 2 cut(s) 21, 886
BsaJI CCNNGG 4 cut(s) 254, 302, 780, 805
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 94, 935, 1049
Bse1I ACTGG 3 cut(s) 52, 494, 1137
Bse3DI GCAATG 2 cut(s) 928, 1513
Bse8I GATNNNNATC 2 cut(s) 21, 886
BseBI CCWGG 5 cut(s) 89, 110, 556, 781, 806
BseDI CCNNGG 4 cut(s) 254, 302, 780, 805
BseGI GGATG 6 cut(s) 322, 655, 951, 1336, 1519, 1573
BseJI GATNNNNATC 2 cut(s) 21, 886
BseLI CCNNNNNNNGG 4 cut(s) 47, 94, 935, 1049
BseMI GCAATG 2 cut(s) 928, 1513
BseMII CTCAG 4 cut(s) 224, 368, 726, 1152
BseNI ACTGG 3 cut(s) 52, 494, 1137
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 719
BseXI GCAGC 4 cut(s) 881, 899, 1001, 1103
BseYI CCCAGC 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 1008
Bsh1236I CGCG 1 cut(s) 1662
BshFI GGCC 1 cut(s) 307
BsiHKAI GWGCWC 2 cut(s) 211, 1385
BsiSI CCGG 1 cut(s) 1629
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 4 cut(s) 47, 94, 935, 1049
BsmAI GTCTC 2 cut(s) 635, 1768
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 3 cut(s) 211, 719, 1385
Bsp68I TCGCGA 1 cut(s) 1662
BspACI CCGC 2 cut(s) 335, 359
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 4 cut(s) 223, 369, 727, 1153
BspFNI CGCG 1 cut(s) 1662
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 560
BspPI GGATC 6 cut(s) 326, 347, 445, 635, 876, 1231
BspTI CTTAAG 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 2 cut(s) 928, 1513
BsrI ACTGG 3 cut(s) 52, 494, 1137
BssECI CCNNGG 4 cut(s) 254, 302, 780, 805
BssNAI GTATAC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 254
Bst1107I GTATAC 1 cut(s) 45
Bst2UI CCWGG 5 cut(s) 89, 110, 556, 781, 806
Bst4CI ACNGT 7 cut(s) 42, 567, 649, 721, 854, 971, 1458
BstAFI CTTAAG 1 cut(s) 317
BstC8I GCNNGC 4 cut(s) 670, 681, 700, 1408
BstDEI CTNAG 6 cut(s) 210, 328, 377, 414, 735, 1161
BstF5I GGATG 6 cut(s) 322, 655, 951, 1336, 1519, 1573
BstFNI CGCG 1 cut(s) 1662
BstMAI GTCTC 2 cut(s) 635, 1768
BstMWI GCNNNNNNNGC 3 cut(s) 918, 1355, 1727
BstNI CCWGG 5 cut(s) 89, 110, 556, 781, 806
BstNSI RCATGY 2 cut(s) 288, 683
BstSCI CCNGG 6 cut(s) 87, 108, 554, 779, 804, 1627
BstSLI GKGCMC 1 cut(s) 719
BstUI CGCG 1 cut(s) 1662
BstV1I GCAGC 4 cut(s) 881, 899, 1001, 1103
BstV2I GAAGAC 2 cut(s) 1035, 1154
BstX2I RGATCY 5 cut(s) 331, 437, 881, 1223, 1265
BstYI RGATCY 5 cut(s) 331, 437, 881, 1223, 1265
BstZ17I GTATAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 6 cut(s) 322, 655, 951, 1336, 1519, 1573
BtsI GCAGTG 2 cut(s) 729, 1285
BtsIMutI CAGTG 3 cut(s) 717, 729, 1285
BtuMI TCGCGA 1 cut(s) 1662
Cac8I GCNNGC 4 cut(s) 670, 681, 700, 1408
CaiI CAGNNNCTG 1 cut(s) 94
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 3 cut(s) 595, 850, 1258
CseI GACGC 1 cut(s) 282
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 3 cut(s) 282, 1705, 1749
CviAII CATG 8 cut(s) 116, 285, 680, 749, 984, 1082, 1652, 1784
CviQI GTAC 3 cut(s) 282, 1705, 1749
DdeI CTNAG 6 cut(s) 210, 328, 377, 414, 735, 1161
DraI TTTAAA 2 cut(s) 103, 1578
Ecl136II GAGCTC 1 cut(s) 1383
Eco130I CCWWGG 1 cut(s) 254
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 1385
Eco47I GGWCC 3 cut(s) 595, 850, 1258
Eco53kI GAGCTC 1 cut(s) 1383
Eco57I CTGAAG 3 cut(s) 386, 1344, 1563
EcoICRI GAGCTC 1 cut(s) 1383
EcoRI GAATTC 3 cut(s) 28, 381, 772
EcoRII CCWGG 5 cut(s) 87, 108, 554, 779, 804
EcoT14I CCWWGG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 1385
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 8 cut(s) 119, 288, 683, 752, 987, 1085, 1655, 1787
FalI AAGNNNNNCTT 6 cut(s) 311, 343, 573, 605, 1347, 1379
FaqI GGGAC 1 cut(s) 272
FatI CATG 8 cut(s) 115, 284, 679, 748, 983, 1081, 1651, 1783
FauNDI CATATG 1 cut(s) 577
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 4 cut(s) 870, 913, 990, 1117
FokI GGATG 6 cut(s) 309, 642, 938, 1343, 1526, 1580
FriOI GRGCYC 1 cut(s) 1385
Fsp4HI GCNGC 4 cut(s) 870, 913, 990, 1117
FspBI CTAG 1 cut(s) 879
GluI GCNGC 4 cut(s) 870, 913, 990, 1117
GsaI CCCAGC 1 cut(s) 613
HaeIII GGCC 1 cut(s) 307
HapII CCGG 1 cut(s) 1629
HgaI GACGC 1 cut(s) 282
Hin1II CATG 8 cut(s) 119, 288, 683, 752, 987, 1085, 1655, 1787
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 9 cut(s) 160, 295, 493, 620, 1133, 1283, 1316, 1400, 1421
HpaII CCGG 1 cut(s) 1629
HphI GGTGA 3 cut(s) 444, 1136, 1262
Hpy166II GTNNAC 2 cut(s) 45, 1749
Hpy8I GTNNAC 2 cut(s) 45, 1749
HpyAV CCTTC 6 cut(s) 263, 669, 1548, 1581, 1587, 1609
HpyCH4III ACNGT 7 cut(s) 42, 567, 649, 721, 854, 971, 1458
HpyCH4IV ACGT 3 cut(s) 226, 894, 1768
HpyCH4V TGCA 6 cut(s) 157, 857, 915, 989, 1103, 1119
HpyF10VI GCNNNNNNNGC 3 cut(s) 918, 1355, 1727
HpyF3I CTNAG 6 cut(s) 210, 328, 377, 414, 735, 1161
HpySE526I ACGT 3 cut(s) 226, 894, 1768
Hsp92II CATG 8 cut(s) 119, 288, 683, 752, 987, 1085, 1655, 1787
LmnI GCTCC 4 cut(s) 91, 361, 558, 1388
Lsp1109I GCAGC 4 cut(s) 881, 899, 1001, 1103
LweI GCATC 6 cut(s) 138, 144, 331, 540, 1321, 1646
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 1 cut(s) 879
MaeII ACGT 3 cut(s) 226, 894, 1768
MaeIII GTNAC 4 cut(s) 222, 485, 1736, 1786
MbiI CCGCTC 1 cut(s) 337
MflI RGATCY 5 cut(s) 331, 437, 881, 1223, 1265
MhlI GDGCHC 3 cut(s) 211, 719, 1385
MmeI TCCRAC 2 cut(s) 209, 1296
MroXI GAANNNNTTC 5 cut(s) 497, 760, 979, 1359, 1802
MseI TTAA 8 cut(s) 102, 318, 512, 540, 600, 1481, 1577, 1691
MslI CAYNNNNRTG 1 cut(s) 984
MspA1I CMGCKG 3 cut(s) 359, 872, 1322
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 1 cut(s) 1629
MspR9I CCNGG 6 cut(s) 89, 110, 556, 781, 806, 1629
MvaI CCWGG 5 cut(s) 89, 110, 556, 781, 806
MvnI CGCG 1 cut(s) 1662
MwoI GCNNNNNNNGC 3 cut(s) 918, 1355, 1727
NciI CCSGG 1 cut(s) 1629
NdeI CATATG 1 cut(s) 577
NlaIII CATG 8 cut(s) 119, 288, 683, 752, 987, 1085, 1655, 1787
NlaIV GGNNCC 1 cut(s) 560
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 3 cut(s) 222, 485, 1736
NruI TCGCGA 1 cut(s) 1662
NspI RCATGY 2 cut(s) 288, 683
PaeI GCATGC 1 cut(s) 683
PagI TCATGA 1 cut(s) 115
PceI AGGCCT 1 cut(s) 307
PciI ACATGT 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdmI GAANNNNTTC 5 cut(s) 497, 760, 979, 1359, 1802
PfeI GAWTC 9 cut(s) 160, 295, 493, 620, 1133, 1283, 1316, 1400, 1421
PflMI CCANNNNNTGG 2 cut(s) 94, 1049
PkrI GCNGC 4 cut(s) 871, 914, 991, 1118
PscI ACATGT 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 1385
Psp1406I AACGTT 1 cut(s) 1768
Psp6I CCWGG 5 cut(s) 87, 108, 554, 779, 804
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 5 cut(s) 87, 108, 554, 779, 804
PspN4I GGNNCC 1 cut(s) 560
PspPI GGNCC 3 cut(s) 595, 850, 1258
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 5 cut(s) 331, 437, 881, 1223, 1265
PvuII CAGCTG 2 cut(s) 872, 1322
RruI TCGCGA 1 cut(s) 1662
RsaI GTAC 3 cut(s) 283, 1706, 1750
RsaNI GTAC 3 cut(s) 282, 1705, 1749
RseI CAYNNNNRTG 1 cut(s) 984
SacI GAGCTC 1 cut(s) 1385
SaqAI TTAA 8 cut(s) 102, 318, 512, 540, 600, 1481, 1577, 1691
SatI GCNGC 4 cut(s) 870, 913, 990, 1117
Sau96I GGNCC 3 cut(s) 595, 850, 1258
ScrFI CCNGG 6 cut(s) 89, 110, 556, 781, 806, 1629
SduI GDGCHC 3 cut(s) 211, 719, 1385
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 6 cut(s) 138, 144, 331, 540, 1321, 1646
SinI GGWCC 3 cut(s) 595, 850, 1258
SmiMI CAYNNNNRTG 1 cut(s) 984
SmlI CTYRAG 3 cut(s) 67, 317, 1227
SmoI CTYRAG 3 cut(s) 67, 317, 1227
SphI GCATGC 1 cut(s) 683
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 2 cut(s) 335, 359
SspMI CTAG 1 cut(s) 879
SstI GAGCTC 1 cut(s) 1385
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 6 cut(s) 87, 108, 554, 779, 804, 1627
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 7 cut(s) 42, 567, 649, 721, 854, 971, 1458
TaiI ACGT 3 cut(s) 229, 897, 1771
TaqI TCGA 5 cut(s) 32, 165, 973, 1434, 1772
TatI WGTACW 3 cut(s) 281, 1704, 1748
TfiI GAWTC 9 cut(s) 160, 295, 493, 620, 1133, 1283, 1316, 1400, 1421
Tru1I TTAA 8 cut(s) 102, 318, 512, 540, 600, 1481, 1577, 1691
Tru9I TTAA 8 cut(s) 102, 318, 512, 540, 600, 1481, 1577, 1691
TscAI CASTG 3 cut(s) 724, 736, 1285
TseFI GTSAC 3 cut(s) 222, 485, 1736
TseI GCWGC 4 cut(s) 869, 912, 989, 1116
Tsp45I GTSAC 3 cut(s) 222, 485, 1736
TspGWI ACGGA 1 cut(s) 1807
TspRI CASTG 3 cut(s) 724, 736, 1285
Van91I CCANNNNNTGG 2 cut(s) 94, 1049
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 3 cut(s) 595, 850, 1258
XapI RAATTY 6 cut(s) 28, 235, 381, 757, 772, 1656
XbaI TCTAGA 1 cut(s) 878
XceI RCATGY 2 cut(s) 288, 683
XmiI GTMKAC 1 cut(s) 44
XmnI GAANNNNTTC 5 cut(s) 497, 760, 979, 1359, 1802
XspI CTAG 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.