Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006281

Physical Location & Seq

Genomic Coordinates Reverse (-)

5479442 .. 5481069

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAAGAGGAGCTACTGCAGGTTCAATCGTGCAAACATGTCTTCCATGTCGATTGCATACATCACTGGCTGCACAACAATACAACCTGCCCCCTTTGCAGATGCTCGGTGATTTCGATTAGTATGAGTACCAAACTCGATAGTAATCCGGCACCAGTAACTGTTAGTACCACCGTGTCAACGGAGCCAGCTGCACAACAACTCCAGCAGCACCATAGCATAGTATTCTCCCACCACAGTCCTGGGATAGTATCGTTGGAGCTACGACAACACCAGCAACAACAGCAACAGATGGACAATTACAATTACGTAGCTTCAAATGTGACAGCACCGGTTGGAGAAGAGTCATCATCAACCACGGGGACTGGTACTGGTTCAACTTTAAGGGACTCTGGGTGTTCTAGTACTAGTGATCGAGATTTGGGAGACTCGGTTACTATTCATATCCGAGACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

152

Amino Acids

16.64

Weight (kDa)

5.66

Isoelectric Point (pI)

60.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	6 - 34	5e-09	Ring finger domain
zf-C3HC4_2	PF13923	7 - 33	7.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	9 - 34	3.1e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12120 AT1G62530 AT1G62530
fragaria_vesca	FvH4_5g00200 FvH4_5g00200 FvH4_5g00200 FvH4_5g00200 FvH4_5g00200 FvH4_5g00200 FvH4_5g00200
malus_domestica	MD04G1085400.v1.1 MD06G1062900.v1.1
prunus_persica	Prupe.5G074300_v2.0.a1
pyrus_communis	pycom04g07660 pycom06g06040 pycom06g06050
rosa_chinensis	RchiOBHm_Chr7g0202661
rosa_laevigata	RLG00000003583
rosa_multiflora	Rmu_sc0002365.1_g000023
rosa_roxburghii	Rroxscaffold_3G00254430
rosa_rugosa	Rorug07G0071500 Rorug07G0071600
rosa_samantha	Rh7AG199500 Rh7BG200300 Rh7CG211000 Rh7DG206400
rosa_wichuraiana	Rw7G017470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	10, 95
AccB1I	GGYRCC	1 cut(s)	151
AfaI	GTAC	4 cut(s)	130, 169, 370, 406
AflIII	ACRYGT	1 cut(s)	37
AgeI	ACCGGT	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	26, 318, 378
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	4 cut(s)	13, 191, 262, 314
AluI	AGCT	4 cut(s)	13, 191, 262, 314
Alw26I	GTCTC	2 cut(s)	420, 444
AlwNI	CAGNNNCTG	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	70, 191, 208
AsiGI	ACCGGT	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	151
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	57, 178, 220
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	420, 444
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	2 cut(s)	402, 408
BfmI	CTRYAG	1 cut(s)	17
BfuAI	ACCTGC	2 cut(s)	10, 95
BisI	GCNGC	3 cut(s)	71, 192, 209
BlsI	GCNGC	3 cut(s)	72, 193, 210
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	153, 186
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	310
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	242, 357
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 417, 447
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	4 cut(s)	71, 155, 370, 376
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	242, 357
BseJI	GATNNNNATC	1 cut(s)	144
BseNI	ACTGG	4 cut(s)	71, 155, 370, 376
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	57, 178, 220
BsgI	GTGCAG	2 cut(s)	56, 177
BshNI	GGYRCC	1 cut(s)	151
BshTI	ACCGGT	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	149, 332
BslFI	GGGAC	2 cut(s)	376, 401
BsmAI	GTCTC	2 cut(s)	420, 444
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	2 cut(s)	376, 401
Bsp143I	GATC	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	153, 186
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	2 cut(s)	10, 95
BspT107I	GGYRCC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	4 cut(s)	71, 155, 370, 376
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	242, 357
BssMI	GATC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	163, 175, 239
Bst6I	CTCTTC	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	357
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	2 cut(s)	420, 444
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 283
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	17
BstSNI	TACGTA	1 cut(s)	310
BstV1I	GCAGC	3 cut(s)	57, 178, 220
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	64
BveI	ACCTGC	2 cut(s)	10, 95
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	331
Csp6I	GTAC	4 cut(s)	129, 168, 369, 405
CspAI	ACCGGT	1 cut(s)	331
CviAII	CATG	2 cut(s)	38, 47
CviJI	RGCY	6 cut(s)	13, 70, 187, 191, 262, 314
CviKI_1	RGCY	6 cut(s)	13, 70, 187, 191, 262, 314
CviQI	GTAC	4 cut(s)	129, 168, 369, 405
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco105I	TACGTA	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	2 cut(s)	41, 50
FaiI	YATR	7 cut(s)	39, 48, 59, 125, 216, 221, 444
FaqI	GGGAC	2 cut(s)	376, 401
FatI	CATG	2 cut(s)	37, 46
Fnu4HI	GCNGC	3 cut(s)	71, 192, 209
Fsp4HI	GCNGC	3 cut(s)	71, 192, 209
FspBI	CTAG	2 cut(s)	402, 408
GluI	GCNGC	3 cut(s)	71, 192, 209
GsuI	CTGGAG	1 cut(s)	188
HapII	CCGG	2 cut(s)	149, 332
Hin1II	CATG	2 cut(s)	41, 50
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	344, 389, 428
HpaII	CCGG	2 cut(s)	149, 332
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	1 cut(s)	180
HpyCH4III	ACNGT	3 cut(s)	163, 175, 239
HpyCH4IV	ACGT	2 cut(s)	309, 453
HpyCH4V	TGCA	6 cut(s)	19, 33, 57, 73, 99, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 283
HpySE526I	ACGT	2 cut(s)	309, 453
Hsp92II	CATG	2 cut(s)	41, 50
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	3 cut(s)	10, 184, 259
Lsp1109I	GCAGC	3 cut(s)	57, 178, 220
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	2 cut(s)	402, 408
MaeII	ACGT	2 cut(s)	309, 453
MaeIII	GTNAC	3 cut(s)	157, 322, 433
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	3 cut(s)	17, 34, 353
MluCI	AATT	2 cut(s)	298, 304
MlyI	GAGTC	3 cut(s)	353, 383, 422
MmeI	TCCRAC	2 cut(s)	237, 316
MseI	TTAA	2 cut(s)	383, 457
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	149, 332
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	96, 283
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	2 cut(s)	41, 50
NlaIV	GGNNCC	2 cut(s)	153, 186
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	41
PciI	ACATGT	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PinAI	ACCGGT	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	72, 193, 210
PleI	GAGTC	3 cut(s)	352, 383, 422
PpsI	GAGTC	3 cut(s)	352, 383, 422
Ppu21I	YACGTR	1 cut(s)	310
PscI	ACATGT	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	153, 186
PstI	CTGCAG	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	4 cut(s)	130, 169, 370, 406
RsaNI	GTAC	4 cut(s)	129, 168, 369, 405
SaqAI	TTAA	2 cut(s)	383, 457
SatI	GCNGC	3 cut(s)	71, 192, 209
Sau3AI	GATC	1 cut(s)	412
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	3 cut(s)	353, 383, 422
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	8 cut(s)	15, 24, 89, 193, 264, 312, 316, 456
SfaNI	GCATC	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	17
SnaBI	TACGTA	1 cut(s)	310
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	2 cut(s)	298, 304
SspMI	CTAG	2 cut(s)	402, 408
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	3 cut(s)	163, 175, 239
TaiI	ACGT	2 cut(s)	312, 456
TaqI	TCGA	4 cut(s)	51, 116, 138, 415
TasI	AATT	2 cut(s)	298, 304
TatI	WGTACW	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	383, 457
Tru9I	TTAA	2 cut(s)	383, 457
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	3 cut(s)	70, 191, 208
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	431
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XspI	CTAG	2 cut(s)	402, 408
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.