Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011950

Physical Location & Seq

Genomic Coordinates Reverse (-)

13866237 .. 13867249

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCCACGGCACCTACTCCAGCGTGCGCCTCCTCAATCACCACGGCCACAACCATCAAGCCACTCCCCCGCTCTCTTCCTCGCTCCCACCTCCCCGCCCTAAACCCCTACAGCCTTCAACCATCCTTGACTCCTCTGTCTCTCCGAACCCCCAAAACGACGCGCAGGCCTGTATTGTGCGCCTCCGCGAGCACGATCTTCGAGGTCGCCCAGGTCCCGGCTCCCGCCACTCGGTCCAAGCTCTTGCCTTTTCGGGTCGGGCACGGATTCGACCTGCACCGGCTGGAGCCCGGGTACCCTCTGATAATCGGCGGCATCGACGTACCCCACGATAGAGGCTGCGAGGCGCCTTCCGACGGAGATGTGTTGCTTCACTGTGTGGTGGATGCGATATTGGGGGCGTTGGGGCTTCCGGATATCGGGCAGATATTCCCGGATTCGGATCCTAAGTGGAGGGGTGCAGCTTCCTCTGTTTTCATCAAAGAAGCTTGTCAAAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

168

Amino Acids

17.74

Weight (kDa)

8.34

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YgbB	PF02542	84 - 165	2.9e-32	YgbB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63970 AT1G63970
fragaria_vesca	FvH4_5g03170
malus_domestica	MD06G1090700.v1.1 MD06G1092700.v1.1 MD14G1111600.v1.1 MD14G1120300.v1.1
prunus_persica	Prupe.5G106300_v2.0.a1
pyrus_communis	pycom06g08640
rosa_chinensis	RchiOBHm_Chr7g0196611
rosa_laevigata	RLG00000004003
rosa_multiflora	Rmu_sc0006080.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259160
rosa_rugosa	Rorug07G0035400
rosa_samantha	Rh7AG159100 Rh7BG161100 Rh7CG167500 Rh7DG160400
rosa_wichuraiana	Rw7G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	282
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	3 cut(s)	10, 294, 346
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	2 cut(s)	163, 188
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	5 cut(s)	70, 96, 186, 225, 312
AclWI	GGATC	2 cut(s)	437, 450
AcoI	YGGCCR	2 cut(s)	3, 45
AcyI	GRCGYC	1 cut(s)	347
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	2 cut(s)	296, 324
AfiI	CCNNNNNNNGG	5 cut(s)	217, 231, 356, 419, 439
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	3 cut(s)	241, 464, 488
AluI	AGCT	3 cut(s)	241, 464, 488
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	437, 450
Ama87I	CYCGRG	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	3 cut(s)	3, 45, 167
ApeKI	GCWGC	2 cut(s)	339, 461
Asp718I	GGTACC	1 cut(s)	294
AspLEI	GCGC	4 cut(s)	29, 165, 182, 349
AspS9I	GGNCC	2 cut(s)	214, 234
AsuC2I	CCSGG	4 cut(s)	218, 291, 292, 434
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	214, 234
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	442
BanI	GGYRCC	3 cut(s)	10, 294, 346
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	326, 473
BccI	CCATC	2 cut(s)	62, 130
BceAI	ACGGC	2 cut(s)	24, 60
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	4 cut(s)	218, 291, 292, 434
BcoDI	GTCTC	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	3 cut(s)	313, 340, 462
BlsI	GCNGC	3 cut(s)	314, 341, 463
Bme1390I	CCNGG	5 cut(s)	212, 218, 291, 292, 434
Bme18I	GGWCC	2 cut(s)	214, 234
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	214, 234
BmiI	GGNNCC	7 cut(s)	12, 216, 222, 288, 296, 348, 444
BmrFI	CCNGG	5 cut(s)	212, 218, 291, 292, 434
BmsI	GCATC	2 cut(s)	324, 376
BpmI	CTGGAG	1 cut(s)	305
BpuMI	CCSGG	4 cut(s)	218, 291, 292, 434
BsaBI	GATNNNNATC	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	6, 42, 210, 290
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	217, 231, 356, 419, 439
Bse118I	RCCGGY	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	4 cut(s)	6, 42, 210, 290
BseGI	GGATG	2 cut(s)	122, 391
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	5 cut(s)	217, 231, 356, 419, 439
BseRI	GAGGAG	2 cut(s)	22, 123
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	326, 473
BsgI	GTGCAG	2 cut(s)	260, 480
Bsh1236I	CGCG	2 cut(s)	163, 188
BshFI	GGCC	3 cut(s)	5, 47, 169
BshNI	GGYRCC	3 cut(s)	10, 294, 346
BsiHKAI	GWGCWC	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	5 cut(s)	218, 280, 291, 413, 434
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	5 cut(s)	217, 231, 356, 419, 439
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	3 cut(s)	5, 47, 169
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	194, 264, 291
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	195, 442
BspACI	CCGC	5 cut(s)	70, 96, 186, 225, 312
BspANI	GGCC	3 cut(s)	5, 47, 169
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	2 cut(s)	163, 188
BspLI	GGNNCC	7 cut(s)	12, 216, 222, 288, 296, 348, 444
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	437, 450
BspT107I	GGYRCC	3 cut(s)	10, 294, 346
BsrBI	CCGCTC	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	4 cut(s)	6, 42, 210, 290
BssMI	GATC	2 cut(s)	195, 442
BssNI	GRCGYC	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	25, 167, 190
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	2 cut(s)	6, 42
BstF5I	GGATG	2 cut(s)	122, 391
BstFNI	CGCG	2 cut(s)	163, 188
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	4 cut(s)	29, 165, 182, 349
BstKTI	GATC	2 cut(s)	198, 445
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	195, 442
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	5 cut(s)	210, 216, 289, 290, 432
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	2 cut(s)	163, 188
BstV1I	GCAGC	2 cut(s)	326, 473
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	5, 47, 169
BtgI	CCRYGG	2 cut(s)	6, 42
BtsCI	GGATG	2 cut(s)	122, 391
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	25, 167, 190
CfoI	GCGC	4 cut(s)	29, 165, 182, 349
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	214, 234
Cfr9I	CCCGGG	1 cut(s)	290
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	295, 323
CviQI	GTAC	2 cut(s)	295, 323
DdeI	CTNAG	1 cut(s)	447
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	2 cut(s)	197, 444
DpnII	GATC	2 cut(s)	195, 442
DraIII	CACNNNGTG	1 cut(s)	379
DrdI	GACNNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	2 cut(s)	3, 45
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	214, 234
Eco88I	CYCGRG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	291
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
FaqI	GGGAC	1 cut(s)	200
FauI	CCCGC	3 cut(s)	77, 103, 232
Fnu4HI	GCNGC	3 cut(s)	313, 340, 462
FokI	GGATG	2 cut(s)	109, 398
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	3 cut(s)	313, 340, 462
GlaI	GCGC	4 cut(s)	28, 164, 181, 348
GluI	GCNGC	3 cut(s)	313, 340, 462
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	5, 47, 169
HapII	CCGG	5 cut(s)	218, 280, 291, 413, 434
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	4 cut(s)	29, 165, 182, 349
Hin1I	GRCGYC	1 cut(s)	347
Hin6I	GCGC	4 cut(s)	27, 163, 180, 347
HinP1I	GCGC	4 cut(s)	27, 163, 180, 347
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	3 cut(s)	130, 267, 437
HpaII	CCGG	5 cut(s)	218, 280, 291, 413, 434
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	146, 303, 355, 442
Hpy188III	TCNNGA	1 cut(s)	413
Hpy99I	CGWCG	3 cut(s)	163, 323, 359
HpyAV	CCTTC	2 cut(s)	125, 360
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	277, 461
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	347
HspAI	GCGC	4 cut(s)	27, 163, 180, 347
KasI	GGCGCC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	412
KpnI	GGTACC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	195, 442
LmnI	GCTCC	3 cut(s)	89, 226, 286
Lsp1109I	GCAGC	2 cut(s)	326, 473
LweI	GCATC	2 cut(s)	324, 376
MaeII	ACGT	1 cut(s)	321
MalI	GATC	2 cut(s)	197, 444
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	2 cut(s)	195, 442
MboII	GAAGA	2 cut(s)	68, 190
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	3 cut(s)	194, 264, 291
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	496
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	378
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	218, 280, 291, 413, 434
MspR9I	CCNGG	5 cut(s)	212, 218, 291, 292, 434
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	2 cut(s)	163, 188
NarI	GGCGCC	1 cut(s)	347
NciI	CCSGG	4 cut(s)	218, 291, 292, 434
NdeII	GATC	2 cut(s)	195, 442
NlaIV	GGNNCC	7 cut(s)	12, 216, 222, 288, 296, 348, 444
PceI	AGGCCT	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 327
PfeI	GAWTC	2 cut(s)	267, 437
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	314, 341, 463
PleI	GAGTC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	7 cut(s)	12, 216, 222, 288, 296, 348, 444
PspPI	GGNCC	2 cut(s)	214, 234
PspPPI	RGGWCCY	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	2 cut(s)	296, 324
RsaNI	GTAC	2 cut(s)	295, 323
SatI	GCNGC	3 cut(s)	313, 340, 462
Sau3AI	GATC	2 cut(s)	195, 442
Sau96I	GGNCC	2 cut(s)	214, 234
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	5 cut(s)	212, 218, 291, 292, 434
SduI	GDGCHC	3 cut(s)	194, 264, 291
SetI	ASST	9 cut(s)	16, 93, 207, 216, 243, 276, 324, 466, 490
SfaNI	GCATC	2 cut(s)	324, 376
SfcI	CTRYAG	1 cut(s)	109
SfoI	GGCGCC	1 cut(s)	348
SinI	GGWCC	2 cut(s)	214, 234
SmaI	CCCGGG	1 cut(s)	292
Sse9I	AATT	1 cut(s)	496
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	5 cut(s)	70, 96, 186, 225, 312
SspDI	GGCGCC	1 cut(s)	346
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	5 cut(s)	210, 216, 289, 290, 432
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	3 cut(s)	201, 270, 318
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	496
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	267, 437
TscAI	CASTG	1 cut(s)	380
TseI	GCWGC	2 cut(s)	339, 461
TspDTI	ATGAA	1 cut(s)	466
TspGWI	ACGGA	2 cut(s)	279, 372
TspMI	CCCGGG	1 cut(s)	290
TspRI	CASTG	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	214, 234
XmaI	CCCGGG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.