Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005582

Physical Location & Seq

Genomic Coordinates Reverse (-)

14562885 .. 14565927

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGGCTACAAATACCACAGTTGCAAATGCATGTCCAGCACCGATGCAAGCAACATCTAATGGGGTCTTTCAGGGTGATAATCCTCTGGATTTTGCTTTCCCTCTTGCCATCTTACAGATATGCCTTGTGGTTGCACTTACACGGATTCTTGCTTATCTTCTTCGACCACTAAGACAGCCTCGTGTGATTGCTGAGATTGTGGGCGGAATATTACTTGGCCCTTCAGCTCTTGGTCGCAACAAAGACTATCTCGAAGCAATATTTCCAAACAGAAGTCTCACAGTGATCGATCCTAAGTCCCTCCGCCGCACTGGAAAGAAGGCTCTATGCATTGCACTTGCAGGAATTACCCTACCTTTTGTTCTAGGAATTGGTACATCATTTGCCCTCAAGGGAACTATTTCTAAAGGTGTAGATGGACCACCATTTCTTGTTTTCATGGGAGTGGCTCTTTCTATAACTGCCTTCCCTGTTTTGGCTCGTATTTTGGCTGAGCTCAAGCTTTTAACTACTGATATTGGCCGAATGGCCATGTCAGCAGCAGCGGTCAATGATGTGGCTGCGTGGATTCTTCTTGCTCTTGCCATTTCCCTCTCCAGCACTGGCCGTTCTCCTCTGGTTTCGATATGGGTTCTCTTGTGCGGGTGTGCTTTTGTCCTCAGTTGTGTATTTTTTATTCGACCAATCTTTAAATGGATGGCACAGCGCTGTCCCGAGGGTGAACCAGTAGACGAATTGTATGTATGTGCTACTTTAGTTGCAGTTTTGGCAGCTGGGTTTGTCACTGATACTATTGGAATTCATGCCCTATTTGGAGCATTTGTGCTCGGAATTATTGTCCCAAAGGAAGGGCCATTTGCAGGCGCTCTTGTTGAAAAAGTTGATGGATTGAAGACTGATATAGCTACAATTCGTGGAGCTCAGTCATGGGGCCTCCTCGTTTTGGTCATTTCAACAGCCTGTTTTGGGAAGATCATTGGCACAGTAGCTGTTTCTCTCCTCTGCCGAGTGCCGTTTCAAGAGGCCTTGGCACTCGGGTTCCTCATGAATACTAAAGGGTTGGTGGAGCTTATTGTCCTTAACATCGGTAGAGACAGAAAGGTTTTGAATGATCGAACATTTGCTATCATGGTTCTCATGGCTATCTTTACAACCTTCGTTACGACGCCTGTAGTAATGGCAGTATACAAGCCAGCTAAAAGAAAGAGTATATCTGATTACAAGTACAGAACTATTGAAAGGAAAGATCCAAACACTGAGCTCCGGGTTTTGATCTGTTTCCACGGTACAAGGAACCTCCCCCCAATGATTAATCTCATCGAGGCTTCTCGTGGGACTGAAAAGAAGGAACGTCTTTGTGTCTATGCAATGCATCTTATGGAAAGAAATGGTCTACCCTTTTGGAACAAGGTGAAGGATTCAGATAATAATCAAGTAGTTGTGGCTTTTGAAACGTTTGAGCAGCTGAGTCAAGTGGCTATCCGTCCAATGACAGCAATCTCTTCCGTTTCTAGCATGCATGAGGACATCTGTGCAACGGCTGAAAGGAAGGGGGCATCAATTATTATTCTCCCATTCCACAAGCACCAGAGGTTGGATGGAGTATTGGAGACAACTCGAACTGAATACAGAGGAGTCAATCGAAGGGTTCTTGAGCATGCTCCATGCTCAGTTGGGATCATGGTGGACCGTGGCCTTGGTGGAAGCACCCATGTATCTGCCAGCAATGTTTCTTCAAGCATAGTTGTCCTATTCTTCGGGGGGTCAGCGACTGAGATGTTTCTCGCTGAATTGAAGCAGAAGATTTCAAATAACAGCTCAATCAAATATGAGGAGAGGGCAGTGAGAAATGCTGCAGAAACTACTGATTTGATTCGTGAGTTTAACCGATGCAATCTATTTCTGGTTGGTCGAAGGCCTGATGGTCAAGTAGCTGCTGCCTTGAATCTGAAGGGAGACTGTCCGGAGCTGGGGCCTGTAGGTATCTTGTTAACCTCTCCGGATTTCACAACTACAGCGTCGGTCTTGGTTATGCAGCAGTATCATGGGCTGGAAGTAGTTCAAGGTTCAGTTGGTTTGTCGAAGGTAGTTGTGTTGCCCGAGGACGAAGATTCAGAAACCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

709

Amino Acids

76.58

Weight (kDa)

8.83

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	47 - 392	9.9e-40	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	456 - 576	2.1e-33	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	589 - 683	3.7e-17	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23700 AT4G23700
fragaria_vesca	FvH4_5g03731 FvH4_5g03731
malus_domestica	MD00G1094100.v1.1 MD06G1097000.v1.1
prunus_persica	Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1
pyrus_communis	pycom06g09310
rosa_chinensis	RchiOBHm_Chr7g0195971
rosa_laevigata	RLG00000004078
rosa_multiflora	Rmu_co8262837.1_g000001 Rmu_sc0004016.1_g000001 Rmu_ssc0000453.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259980
rosa_rugosa	Rorug07G0027700 Rorug07G0027900 Rorug07G0028000 Rorug07G0028100
rosa_samantha	Rh7AG155200 Rh7BG157100 Rh7CG160600 Rh7DG156100
rosa_wichuraiana	Rw7G013270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1594
AccI	GTMKAC	3 cut(s)	729, 1185, 1393
AccIII	TCCGGA	2 cut(s)	1963, 1999
AciI	CCGC	5 cut(s)	204, 304, 307, 545, 642
AclI	AACGTT	1 cut(s)	1454
AclWI	GGATC	3 cut(s)	284, 1241, 1685
AcoI	YGGCCR	3 cut(s)	520, 528, 604
AcsI	RAATTY	1 cut(s)	798
AcuI	CTGAAG	2 cut(s)	207, 1970
AcyI	GRCGYC	1 cut(s)	1166
AfaI	GTAC	3 cut(s)	376, 1226, 1288
AfeI	AGCGCT	1 cut(s)	707
AfiI	CCNNNNNNNGG	7 cut(s)	475, 848, 860, 943, 966, 1594, 1970
Alw21I	GWGCWC	4 cut(s)	498, 828, 922, 1263
Alw26I	GTCTC	4 cut(s)	281, 1086, 1604, 1950
AlwI	GGATC	3 cut(s)	284, 1241, 1685
AlwNI	CAGNNNCTG	2 cut(s)	989, 1772
Ama87I	CYCGRG	3 cut(s)	713, 1034, 2099
Aor13HI	TCCGGA	2 cut(s)	1963, 1999
Aor51HI	AGCGCT	1 cut(s)	707
ApeKI	GCWGC	9 cut(s)	539, 542, 560, 770, 1462, 1853, 1934, 1937, 2035
ApoI	RAATTY	1 cut(s)	798
AseI	ATTAAT	1 cut(s)	1311
Asp700I	GAANNNNTTC	2 cut(s)	400, 2058
AspLEI	GCGC	2 cut(s)	708, 866
AspS9I	GGNCC	6 cut(s)	218, 419, 851, 931, 1687, 1973
AsuC2I	CCSGG	1 cut(s)	1265
AsuHPI	GGTGA	3 cut(s)	86, 731, 1423
AvaI	CYCGRG	3 cut(s)	713, 1034, 2099
AvaII	GGWCC	2 cut(s)	419, 1687
BaeI	ACNNNNGTAYC	2 cut(s)	1698, 1731
BalI	TGGCCA	1 cut(s)	530
BanII	GRGCYC	3 cut(s)	498, 922, 1263
BauI	CACGAG	2 cut(s)	180, 1329
BbsI	GAAGAC	1 cut(s)	899
Bbv12I	GWGCWC	4 cut(s)	498, 828, 922, 1263
BbvI	GCAGC	9 cut(s)	547, 551, 554, 782, 1474, 1840, 1921, 1924, 2047
BccI	CCATC	6 cut(s)	116, 410, 691, 878, 1592, 1916
BceAI	ACGGC	3 cut(s)	591, 997, 1554
BcnI	CCSGG	1 cut(s)	1265
BcoDI	GTCTC	4 cut(s)	281, 1086, 1604, 1950
BfaI	CTAG	2 cut(s)	365, 1512
BfmI	CTRYAG	4 cut(s)	1170, 1854, 1977, 2013
BfoI	RGCGCY	2 cut(s)	709, 867
BlpI	GCTNAGC	1 cut(s)	492
Bme1390I	CCNGG	1 cut(s)	1265
Bme18I	GGWCC	2 cut(s)	419, 1687
BmeT110I	CYCGRG	3 cut(s)	713, 1034, 2099
BmgT120I	GGNCC	6 cut(s)	218, 419, 851, 931, 1687, 1973
BmiI	GGNNCC	4 cut(s)	932, 1040, 1295, 1974
BmrFI	CCNGG	1 cut(s)	1265
BmsI	GCATC	4 cut(s)	33, 1381, 1565, 1880
BpiI	GAAGAC	1 cut(s)	899
BpmI	CTGGAG	1 cut(s)	580
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	3 cut(s)	374, 482, 1673
BpuMI	CCSGG	1 cut(s)	1265
Bsa29I	ATCGAT	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	1428
BsaHI	GRCGYC	1 cut(s)	1166
BsaJI	CCNNGG	6 cut(s)	714, 1026, 1282, 1690, 1696, 2100
BsaWI	WCCGGW	2 cut(s)	1963, 1999
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bsc4I	CCNNNNNNNGG	7 cut(s)	475, 848, 860, 943, 966, 1594, 1970
Bse118I	RCCGGY	1 cut(s)	2120
Bse1I	ACTGG	3 cut(s)	316, 607, 725
Bse3DI	GCAATG	3 cut(s)	330, 1374, 1732
Bse8I	GATNNNNATC	1 cut(s)	1428
BseAI	TCCGGA	2 cut(s)	1963, 1999
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	6 cut(s)	714, 1026, 1282, 1690, 1696, 2100
BseGI	GGATG	2 cut(s)	702, 1603
BseJI	GATNNNNATC	1 cut(s)	1428
BseLI	CCNNNNNNNGG	7 cut(s)	475, 848, 860, 943, 966, 1594, 1970
BseMI	GCAATG	3 cut(s)	330, 1374, 1732
BseMII	CTCAG	8 cut(s)	183, 483, 673, 935, 1248, 1457, 1683, 1764
BseNI	ACTGG	3 cut(s)	316, 607, 725
BseRI	GAGGAG	5 cut(s)	603, 926, 989, 1647, 1847
BseXI	GCAGC	9 cut(s)	547, 551, 554, 782, 1474, 1840, 1921, 1924, 2047
BseYI	CCCAGC	2 cut(s)	773, 1969
BshVI	ATCGAT	1 cut(s)	288
BsiHKAI	GWGCWC	4 cut(s)	498, 828, 922, 1263
BsiHKCI	CYCGRG	3 cut(s)	713, 1034, 2099
BsiSI	CCGG	4 cut(s)	1264, 1964, 2000, 2121
BslFI	GGGAC	4 cut(s)	283, 696, 824, 1348
BslI	CCNNNNNNNGG	7 cut(s)	475, 848, 860, 943, 966, 1594, 1970
BsmAI	GTCTC	4 cut(s)	281, 1086, 1604, 1950
BsmFI	GGGAC	4 cut(s)	283, 696, 824, 1348
BsoBI	CYCGRG	3 cut(s)	713, 1034, 2099
Bsp1286I	GDGCHC	4 cut(s)	498, 828, 922, 1263
Bsp13I	TCCGGA	2 cut(s)	1963, 1999
Bsp143I	GATC	7 cut(s)	285, 289, 972, 1111, 1246, 1272, 1677
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	5 cut(s)	204, 304, 307, 545, 642
BspCNI	CTCAG	8 cut(s)	184, 484, 672, 934, 1249, 1458, 1682, 1765
BspDI	ATCGAT	1 cut(s)	288
BspEI	TCCGGA	2 cut(s)	1963, 1999
BspHI	TCATGA	1 cut(s)	1044
BspLI	GGNNCC	4 cut(s)	932, 1040, 1295, 1974
BspMAI	CTGCAG	1 cut(s)	1858
BspPI	GGATC	3 cut(s)	284, 1241, 1685
BsrDI	GCAATG	3 cut(s)	330, 1374, 1732
BsrFI	RCCGGY	1 cut(s)	2120
BsrI	ACTGG	3 cut(s)	316, 607, 725
BssAI	RCCGGY	1 cut(s)	2120
BssECI	CCNNGG	6 cut(s)	714, 1026, 1282, 1690, 1696, 2100
BssMI	GATC	7 cut(s)	285, 289, 972, 1111, 1246, 1272, 1677
BssNAI	GTATAC	1 cut(s)	1186
BssNI	GRCGYC	1 cut(s)	1166
BssSI	CACGAG	2 cut(s)	180, 1329
BssT1I	CCWWGG	2 cut(s)	1026, 1696
Bst1107I	GTATAC	1 cut(s)	1186
Bst2BI	CACGAG	2 cut(s)	180, 1329
Bst4CI	ACNGT	6 cut(s)	19, 283, 985, 1286, 1691, 1961
Bst6I	CTCTTC	1 cut(s)	1507
BstACI	GRCGYC	1 cut(s)	1166
BstC8I	GCNNGC	6 cut(s)	48, 862, 1194, 1517, 1659, 1723
BstDSI	CCRYGG	2 cut(s)	1282, 1690
BstF5I	GGATG	2 cut(s)	702, 1603
BstH2I	RGCGCY	2 cut(s)	709, 867
BstHHI	GCGC	2 cut(s)	708, 866
BstKTI	GATC	7 cut(s)	288, 292, 975, 1114, 1249, 1275, 1680
BstMAI	GTCTC	4 cut(s)	281, 1086, 1604, 1950
BstMBI	GATC	7 cut(s)	285, 289, 972, 1111, 1246, 1272, 1677
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 536, 767
BstNSI	RCATGY	3 cut(s)	33, 1519, 1661
BstSCI	CCNGG	1 cut(s)	1263
BstSFI	CTRYAG	4 cut(s)	1170, 1854, 1977, 2013
BstV1I	GCAGC	9 cut(s)	547, 551, 554, 782, 1474, 1840, 1921, 1924, 2047
BstV2I	GAAGAC	1 cut(s)	899
BstX2I	RGATCY	1 cut(s)	1246
BstYI	RGATCY	1 cut(s)	1246
BstZ17I	GTATAC	1 cut(s)	1186
Bsu15I	ATCGAT	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	2 cut(s)	1282, 1690
BtsCI	GGATG	2 cut(s)	702, 1603
BtsI	GCAGTG	1 cut(s)	1848
BtsIMutI	CAGTG	6 cut(s)	288, 309, 600, 783, 1254, 1848
Cac8I	GCNNGC	6 cut(s)	48, 862, 1194, 1517, 1659, 1723
CaiI	CAGNNNCTG	2 cut(s)	989, 1772
CciI	TCATGA	1 cut(s)	1044
CfoI	GCGC	2 cut(s)	708, 866
Cfr10I	RCCGGY	1 cut(s)	2120
Cfr13I	GGNCC	6 cut(s)	218, 419, 851, 931, 1687, 1973
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	2 cut(s)	1174, 2007
Csp6I	GTAC	3 cut(s)	375, 1225, 1287
CviQI	GTAC	3 cut(s)	375, 1225, 1287
DpnI	GATC	7 cut(s)	287, 291, 974, 1113, 1248, 1274, 1679
DpnII	GATC	7 cut(s)	285, 289, 972, 1111, 1246, 1272, 1677
DraI	TTTAAA	1 cut(s)	691
EaeI	YGGCCR	3 cut(s)	520, 528, 604
Eam1104I	CTCTTC	1 cut(s)	1507
EarI	CTCTTC	1 cut(s)	1507
EciI	GGCGGA	2 cut(s)	219, 293
Ecl136II	GAGCTC	3 cut(s)	496, 920, 1261
Eco130I	CCWWGG	2 cut(s)	1026, 1696
Eco147I	AGGCCT	2 cut(s)	1025, 1918
Eco24I	GRGCYC	3 cut(s)	498, 922, 1263
Eco47I	GGWCC	2 cut(s)	419, 1687
Eco47III	AGCGCT	1 cut(s)	707
Eco53kI	GAGCTC	3 cut(s)	496, 920, 1261
Eco57I	CTGAAG	2 cut(s)	207, 1970
Eco88I	CYCGRG	3 cut(s)	713, 1034, 2099
EcoICRI	GAGCTC	3 cut(s)	496, 920, 1261
EcoO109I	RGGNCCY	2 cut(s)	931, 1973
EcoRI	GAATTC	1 cut(s)	798
EcoT14I	CCWWGG	2 cut(s)	1026, 1696
EcoT22I	ATGCAT	4 cut(s)	31, 332, 1374, 1521
EcoT38I	GRGCYC	3 cut(s)	498, 922, 1263
ErhI	CCWWGG	2 cut(s)	1026, 1696
FaqI	GGGAC	4 cut(s)	283, 696, 824, 1348
FauI	CCCGC	1 cut(s)	635
FblI	GTMKAC	3 cut(s)	729, 1185, 1393
FokI	GGATG	2 cut(s)	709, 1610
FriOI	GRGCYC	3 cut(s)	498, 922, 1263
FspBI	CTAG	2 cut(s)	365, 1512
GlaI	GCGC	2 cut(s)	707, 865
GsaI	CCCAGC	2 cut(s)	777, 1973
GsuI	CTGGAG	1 cut(s)	580
HaeII	RGCGCY	2 cut(s)	709, 867
HapII	CCGG	4 cut(s)	1264, 1964, 2000, 2121
HgaI	GACGC	2 cut(s)	1174, 2007
HhaI	GCGC	2 cut(s)	708, 866
Hin1I	GRCGYC	1 cut(s)	1166
Hin6I	GCGC	2 cut(s)	706, 864
HinP1I	GCGC	2 cut(s)	706, 864
HincII	GTYRAC	1 cut(s)	1992
HindII	GTYRAC	1 cut(s)	1992
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	8 cut(s)	145, 568, 1418, 1468, 1635, 1873, 1945, 2111
HpaI	GTTAAC	1 cut(s)	1992
HpaII	CCGG	4 cut(s)	1264, 1964, 2000, 2121
HphI	GGTGA	3 cut(s)	86, 731, 1423
Hpy166II	GTNNAC	6 cut(s)	722, 730, 1186, 1394, 1687, 1992
Hpy188I	TCNGA	5 cut(s)	830, 1216, 1423, 1950, 2116
Hpy188III	TCNNGA	9 cut(s)	86, 251, 713, 1019, 1045, 1652, 1877, 1964, 2000
Hpy8I	GTNNAC	6 cut(s)	722, 730, 1186, 1394, 1687, 1992
Hpy99I	CGWCG	2 cut(s)	1168, 2023
HpyCH4III	ACNGT	6 cut(s)	19, 283, 985, 1286, 1691, 1961
HpyCH4IV	ACGT	2 cut(s)	1351, 1454
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 536, 767
HpySE526I	ACGT	2 cut(s)	1351, 1454
Hsp92I	GRCGYC	1 cut(s)	1166
HspAI	GCGC	2 cut(s)	706, 864
Kpn2I	TCCGGA	2 cut(s)	1963, 1999
KspAI	GTTAAC	1 cut(s)	1992
Kzo9I	GATC	7 cut(s)	285, 289, 972, 1111, 1246, 1272, 1677
LmnI	GCTCC	6 cut(s)	815, 917, 1066, 1266, 1666, 1966
Lsp1109I	GCAGC	9 cut(s)	547, 551, 554, 782, 1474, 1840, 1921, 1924, 2047
LweI	GCATC	4 cut(s)	33, 1381, 1565, 1880
MaeI	CTAG	2 cut(s)	365, 1512
MaeII	ACGT	2 cut(s)	1351, 1454
MaeIII	GTNAC	2 cut(s)	781, 1159
MalI	GATC	7 cut(s)	287, 291, 974, 1113, 1248, 1274, 1679
MboI	GATC	7 cut(s)	285, 289, 972, 1111, 1246, 1272, 1677
MflI	RGATCY	1 cut(s)	1246
MhlI	GDGCHC	4 cut(s)	498, 828, 922, 1263
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	8 cut(s)	345, 369, 734, 798, 831, 909, 1560, 1790
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	1477, 1644
MmeI	TCCRAC	1 cut(s)	1575
Mox20I	TGGCCA	1 cut(s)	530
Mph1103I	ATGCAT	4 cut(s)	31, 332, 1374, 1521
MroI	TCCGGA	2 cut(s)	1963, 1999
MroXI	GAANNNNTTC	2 cut(s)	400, 2058
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	6 cut(s)	506, 690, 1080, 1311, 1884, 1991
MslI	CAYNNNNRTG	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	3 cut(s)	545, 773, 1465
MspI	CCGG	4 cut(s)	1264, 1964, 2000, 2121
MspR9I	CCNGG	1 cut(s)	1265
MwoI	GCNNNNNNNGC	3 cut(s)	35, 536, 767
NciI	CCSGG	1 cut(s)	1265
NdeII	GATC	7 cut(s)	285, 289, 972, 1111, 1246, 1272, 1677
NlaIV	GGNNCC	4 cut(s)	932, 1040, 1295, 1974
NmeAIII	GCCGAG	1 cut(s)	1031
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	4 cut(s)	31, 332, 1374, 1521
NspI	RCATGY	3 cut(s)	33, 1519, 1661
PaeI	GCATGC	2 cut(s)	1519, 1661
PagI	TCATGA	1 cut(s)	1044
PceI	AGGCCT	2 cut(s)	1025, 1918
PdmI	GAANNNNTTC	2 cut(s)	400, 2058
PfeI	GAWTC	6 cut(s)	145, 568, 1418, 1873, 1945, 2111
PflMI	CCANNNNNTGG	1 cut(s)	1594
PleI	GAGTC	2 cut(s)	1476, 1643
PpsI	GAGTC	2 cut(s)	1476, 1643
PshBI	ATTAAT	1 cut(s)	1311
Psp124BI	GAGCTC	3 cut(s)	498, 922, 1263
Psp1406I	AACGTT	1 cut(s)	1454
PspFI	CCCAGC	2 cut(s)	773, 1969
PspN4I	GGNNCC	4 cut(s)	932, 1040, 1295, 1974
PspPI	GGNCC	6 cut(s)	218, 419, 851, 931, 1687, 1973
PstI	CTGCAG	1 cut(s)	1858
PstNI	CAGNNNCTG	2 cut(s)	989, 1772
PsuI	RGATCY	1 cut(s)	1246
PvuII	CAGCTG	2 cut(s)	773, 1465
RsaI	GTAC	3 cut(s)	376, 1226, 1288
RsaNI	GTAC	3 cut(s)	375, 1225, 1287
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	3 cut(s)	498, 922, 1263
SaqAI	TTAA	6 cut(s)	506, 690, 1080, 1311, 1884, 1991
Sau3AI	GATC	7 cut(s)	285, 289, 972, 1111, 1246, 1272, 1677
Sau96I	GGNCC	6 cut(s)	218, 419, 851, 931, 1687, 1973
SchI	GAGTC	2 cut(s)	1477, 1644
ScrFI	CCNGG	1 cut(s)	1265
SduI	GDGCHC	4 cut(s)	498, 828, 922, 1263
SfaNI	GCATC	4 cut(s)	33, 1381, 1565, 1880
SfcI	CTRYAG	4 cut(s)	1170, 1854, 1977, 2013
SinI	GGWCC	2 cut(s)	419, 1687
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	3 cut(s)	389, 497, 1652
SmoI	CTYRAG	3 cut(s)	389, 497, 1652
SphI	GCATGC	2 cut(s)	1519, 1661
Sse9I	AATT	8 cut(s)	345, 369, 734, 798, 831, 909, 1560, 1790
SseBI	AGGCCT	2 cut(s)	1025, 1918
SsiI	CCGC	5 cut(s)	204, 304, 307, 545, 642
SspI	AATATT	2 cut(s)	210, 261
SspMI	CTAG	2 cut(s)	365, 1512
SstI	GAGCTC	3 cut(s)	498, 922, 1263
StuI	AGGCCT	2 cut(s)	1025, 1918
StyD4I	CCNGG	1 cut(s)	1263
StyI	CCWWGG	2 cut(s)	1026, 1696
TaaI	ACNGT	6 cut(s)	19, 283, 985, 1286, 1691, 1961
TaiI	ACGT	2 cut(s)	1354, 1457
TaqII	GACCGA	1 cut(s)	2011
TasI	AATT	8 cut(s)	345, 369, 734, 798, 831, 909, 1560, 1790
TatI	WGTACW	1 cut(s)	1224
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	6 cut(s)	145, 568, 1418, 1873, 1945, 2111
Tru1I	TTAA	6 cut(s)	506, 690, 1080, 1311, 1884, 1991
Tru9I	TTAA	6 cut(s)	506, 690, 1080, 1311, 1884, 1991
TscAI	CASTG	6 cut(s)	288, 316, 607, 790, 1261, 1848
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	9 cut(s)	539, 542, 560, 770, 1462, 1853, 1934, 1937, 2035
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	3 cut(s)	427, 791, 1061
TspGWI	ACGGA	3 cut(s)	157, 1472, 1495
TspRI	CASTG	6 cut(s)	288, 316, 607, 790, 1261, 1848
Van91I	CCANNNNNTGG	1 cut(s)	1594
VpaK11BI	GGWCC	2 cut(s)	419, 1687
VspI	ATTAAT	1 cut(s)	1311
XapI	RAATTY	1 cut(s)	798
XceI	RCATGY	3 cut(s)	33, 1519, 1661
XcmI	CCANNNNNNNNNTGG	2 cut(s)	690, 1595
XmiI	GTMKAC	3 cut(s)	729, 1185, 1393
XmnI	GAANNNNTTC	2 cut(s)	400, 2058
XspI	CTAG	2 cut(s)	365, 1512
Zsp2I	ATGCAT	4 cut(s)	31, 332, 1374, 1521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.