Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005582

Physical Location & Seq

Genomic Coordinates Reverse (-)

54334523 .. 54340267

Gene Structure 5745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2415 bp

ATGGCGAACAATACCACAGTAACATGTCCATCTCCTATGAAAGCAACATCCAATGGAGTCTTCCAGGGTGATAATCCTCTGGATTTTGCGCTCCCTCTTGCCATCTTGCAAATATGTCTTGTGGTTGCACTTACGCGCATTCTTGCTTATCTTCTTCGGCCACTAAGACAGCCTCGTGTGATTGCAGAGATTGTTGGAGGTATCTTACTTGGCCCTTCAGCTCTTGGTCACAACAAAAAGTATACCAATGCAATTTTCCCGGCAAAAAGTCTTACAGTGCTTGATACTTTAGCAAATCTTGGTCTTCTCTTCTTTCTGTTCCTAGTGGGTTTGGAGTTAGATCCCAAGTCCCTCCGCCGGACTGGAAAGAAAGCTCTCAGCATAGCTCTTGCAGGAATTACTTTACCATTTGTATTAGGAATTGGAACATCATTTGCCCTTAAAGGAACTATTTCTAAAGGTGTAGATGGACCCCCATTTCTTGTCTTCATGGGAGTGGCTCTTTCTATAACTGCCTTCCCTGTTTTGGCTCGTATTTTGGCTGAGCTCAAGCTCTTAACCACTGATATTGGCCGAATGGCCATGTCAGCAGCAGCTGTTAATGATGTGGCTGCATGGATTCTTCTTGCCCTTGCCATTTCCCTCTCTGGTAGTGGCCGCTCTCCCCTGGTTTCACTCTGGGTTCTCTTGTGTGGATGTGCTTTTGTTCTTGTATGTATATTTGCTGTTCGACCTGTATTTAAATGGATGGTGGAGCGTTGTCCTGATGGTGAACCAGTAGAAGAATTGTATGTATGCGCTACCTTGGCTTCAGTTTTGGCAGCTGGGTTTGTCACTGAAACTATTGGAATTCATGCTCTATTTGGTGCATTCGTGCTTGGAATTATTGTTCCAAAGGAAGGACCATTTGCAGGCGCCCTTGTAGAAAAAGTTGAGGATCTTGTATCTGGTCTATTCCTCCCATTATACTTTGTCTCAAGTGGATTGAAGACTGATATAACAACAATTCGTGGCGCTCAGTCATGGGGTCTCTTAGTCTTGGTCATTTCAACAGCCTGTTTCGGAAAGGTCATTGGCACTATAGCTGTTTCCCTCTTCTGCAAAGTACCCTTTCAGGAGGCTCTAGCTCTGGGGTTCCTCATGAATACTAAAGGGTTGGTGGAGCTCATTGTCCTTAACATTGGTAAAGACAGAAAGGTTTTGAATGATCAAACATTTGCTATCATGGTTCTCATGGCTGTCTTCACAACCTTCATTACAACACCTATAGTTATGGCAGTATATAAGCCGGCTAAAAGATTGAGTAAAGATTACAAGTACAAAACTATTGAGAGGAAAGACCCAAATAGTCAGCTCCGACTCTTGACCTGTTTCCATGGTACAAGGAACCTACCCACGATGATTAATCTCATCGAGGCTTCCCGTGGGACTGAAAAGAGGGAACGGCTTTGTGTCTATGCAATGCACCTTATGGAGCTTAATGAAAGGCCTTCTGCAATATTGATGGTTCACAAGGCAAGAAACAATGGTCTACCCTTTTGGAATAAAGGGCAGCAGTCAGCTAATAATAATCAAGTTGTTGTGGCTTTTGAGACCTTTGAGCAGCTGAGTCGAGTGGCTATCCGTCCAATGACAGCAATCTCTTCTATAACTAGCATGCATGAGGACATCTGCACAAGTGCTGATAGTGAAAGAGCAGCAATGATAATACTCCCATTCCACAAGCACCAGAGGTTGGATGGTACCTTTGAGACGACTCGAAGTGAGTACAGATTGATCAACCAACAGGTTCTTCAGAATGCACCATGTTCAGTGGGGATCATAGTGGATCGTGGTCTAGGTGGAAGCAGCCATGTATCTGCCAGCAGTGTTGACTCAGTGTTCACCGTTCTGTTCTTTGGGGGTAGTGATGATCGTGAGGCTCTTGCTTATGGGATTCGAATGGCTGAGCATCCGGGTATCAACTTAAATATCATTCACTTCTTACCGAGCCCTGAGCTTCAGGGGGAGATAGTCAGAGTTGATGTAAACGATGGCTCAAACACTTCAGCAGGGCCAATGGAGAACAAGTTCATTGCTGAATTGAAGCAGAAGATTTCGAATTACAGCTCAATCAAATATGAGGAGAGAGTAGTGGGAAATGCTGCAGAAACTACTGCATCGATTCATGAGTTCAGCCAATGTAACTTGTTTTTGGTTGGTCGAAGGCCTCAGGGTCAAATCGCTTCTGCATTGAATGTGAAGAGTGACTGCCCTGAATTGGGGCCTGTTGGGTGCTTGTTGACTTCTCCGGACTTCAGTACCACCGCATCAGTCTTAATAGTACAGCAATATCATGGCCCTACAGTATCAAACTCATCAGTTAGTTTGTCGAAGGTAGTCGTGTTGCCCGAGGAAGATTCAGAAACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

804

Amino Acids

86.89

Weight (kDa)

8.36

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	45 - 424	4.4e-67	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	480 - 622	1.5e-46	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	629 - 780	8.3e-35	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23700 AT4G23700
fragaria_vesca	FvH4_5g03731 FvH4_5g03731
malus_domestica	MD00G1094100.v1.1 MD06G1097000.v1.1
prunus_persica	Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1
pyrus_communis	pycom06g09310
rosa_chinensis	RchiOBHm_Chr7g0195971
rosa_laevigata	RLG00000004078
rosa_multiflora	Rmu_co8262837.1_g000001 Rmu_sc0004016.1_g000001 Rmu_ssc0000453.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259980
rosa_rugosa	Rorug07G0027700 Rorug07G0027900 Rorug07G0028000 Rorug07G0028100
rosa_samantha	Rh7AG155200 Rh7BG157100 Rh7CG160600 Rh7DG156100
rosa_wichuraiana	Rw7G013270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1742
AccB1I	GGYRCC	2 cut(s)	914, 1742
AccB7I	CCANNNNNTGG	1 cut(s)	1735
AccBSI	CCGCTC	1 cut(s)	660
AccI	GTMKAC	2 cut(s)	242, 1531
AccII	CGCG	1 cut(s)	136
AccIII	TCCGGA	1 cut(s)	2290
AciI	CCGC	3 cut(s)	355, 658, 2307
AclWI	GGATC	4 cut(s)	335, 945, 1826, 1836
AcoI	YGGCCR	4 cut(s)	158, 571, 579, 655
AcsI	RAATTY	1 cut(s)	849
AcuI	CTGAAG	6 cut(s)	201, 795, 1778, 1985, 2031, 2281
AcyI	GRCGYC	1 cut(s)	915
AfaI	GTAC	7 cut(s)	1107, 1319, 1381, 1744, 1769, 2302, 2325
AfiI	CCNNNNNNNGG	7 cut(s)	357, 526, 899, 911, 1735, 2260, 2261
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	5 cut(s)	988, 1050, 1204, 2086, 2236
AjnI	CCWGG	2 cut(s)	63, 666
AjuI	GAANNNNNNNTTGG	6 cut(s)	44, 76, 239, 271, 1776, 1808
AloI	GAACNNNNNNTCC	4 cut(s)	873, 905, 2054, 2086
Alw21I	GWGCWC	2 cut(s)	549, 1167
Alw26I	GTCTC	4 cut(s)	979, 1034, 1586, 1745
AlwI	GGATC	4 cut(s)	335, 945, 1826, 1836
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	2390
Aor13HI	TCCGGA	1 cut(s)	2290
ApeKI	GCWGC	9 cut(s)	590, 593, 611, 821, 1552, 1603, 1697, 1848, 2144
ApoI	RAATTY	1 cut(s)	849
AseI	ATTAAT	1 cut(s)	1404
Asp700I	GAANNNNTTC	2 cut(s)	451, 2069
Asp718I	GGTACC	1 cut(s)	1742
AspLEI	GCGC	5 cut(s)	91, 138, 800, 917, 1016
AspS9I	GGNCC	6 cut(s)	212, 470, 902, 2054, 2264, 2339
AsuC2I	CCSGG	2 cut(s)	260, 1956
AsuHPI	GGTGA	3 cut(s)	80, 782, 1876
AsuII	TTCGAA	2 cut(s)	1939, 2099
AvaI	CYCGRG	1 cut(s)	2390
AvaII	GGWCC	2 cut(s)	470, 902
AxyI	CCTNAGG	1 cut(s)	2211
BaeI	ACNNNNGTAYC	2 cut(s)	2284, 2317
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	2 cut(s)	914, 1742
BanII	GRGCYC	3 cut(s)	549, 1167, 1994
BauI	CACGAG	1 cut(s)	174
BbsI	GAAGAC	5 cut(s)	52, 296, 478, 995, 1234
Bbv12I	GWGCWC	2 cut(s)	549, 1167
BbvI	GCAGC	9 cut(s)	598, 602, 605, 833, 1564, 1615, 1709, 1860, 2131
BccI	CCATC	8 cut(s)	37, 110, 461, 742, 761, 1498, 1733, 2027
BceAI	ACGGC	1 cut(s)	1460
BcgI	CGANNNNNNTGC	2 cut(s)	1592, 1626
BciT130I	CCWGG	2 cut(s)	65, 668
BclI	TGATCA	2 cut(s)	1207, 1776
BcnI	CCSGG	2 cut(s)	260, 1956
BcoDI	GTCTC	4 cut(s)	979, 1034, 1586, 1745
BfaI	CTAG	4 cut(s)	323, 1124, 1653, 1838
BfmI	CTRYAG	4 cut(s)	1080, 1266, 2145, 2343
BfoI	RGCGCY	2 cut(s)	918, 1017
BlpI	GCTNAGC	2 cut(s)	543, 1947
Bme1390I	CCNGG	4 cut(s)	65, 260, 668, 1956
Bme18I	GGWCC	2 cut(s)	470, 902
BmeT110I	CYCGRG	1 cut(s)	2390
BmgT120I	GGNCC	6 cut(s)	212, 470, 902, 2054, 2264, 2339
BmiI	GGNNCC	6 cut(s)	472, 916, 1136, 1388, 1744, 2265
BmrFI	CCNGG	4 cut(s)	65, 260, 668, 1956
BmsI	GCATC	3 cut(s)	1960, 2168, 2318
BpiI	GAAGAC	5 cut(s)	52, 296, 478, 995, 1234
Bpu10I	CCTNAGC	1 cut(s)	1995
Bpu1102I	GCTNAGC	2 cut(s)	543, 1947
Bpu14I	TTCGAA	2 cut(s)	1939, 2099
BpuEI	CTTGAG	2 cut(s)	533, 961
BpuMI	CCSGG	2 cut(s)	260, 1956
Bsa29I	ATCGAT	1 cut(s)	2162
BsaHI	GRCGYC	1 cut(s)	915
BsaI	GGTCTC	2 cut(s)	1034, 1586
BsaJI	CCNNGG	6 cut(s)	64, 666, 804, 1375, 1423, 2391
BsaWI	WCCGGW	1 cut(s)	2290
BsaXI	ACNNNNNCTCC	2 cut(s)	2054, 2084
Bsc4I	CCNNNNNNNGG	7 cut(s)	357, 526, 899, 911, 1735, 2260, 2261
Bse118I	RCCGGY	1 cut(s)	1288
Bse1I	ACTGG	2 cut(s)	367, 776
Bse21I	CCTNAGG	1 cut(s)	2211
Bse3DI	GCAATG	3 cut(s)	1467, 1707, 2073
BseAI	TCCGGA	1 cut(s)	2290
BseBI	CCWGG	2 cut(s)	65, 668
BseCI	ATCGAT	1 cut(s)	2162
BseDI	CCNNGG	6 cut(s)	64, 666, 804, 1375, 1423, 2391
BseGI	GGATG	5 cut(s)	47, 701, 753, 1744, 1951
BseLI	CCNNNNNNNGG	7 cut(s)	357, 526, 899, 911, 1735, 2260, 2261
BseMI	GCAATG	3 cut(s)	1467, 1707, 2073
BseMII	CTCAG	8 cut(s)	391, 534, 1031, 1598, 1890, 1938, 1986, 2225
BseNI	ACTGG	2 cut(s)	367, 776
BseRI	GAGGAG	1 cut(s)	2138
BseXI	GCAGC	9 cut(s)	598, 602, 605, 833, 1564, 1615, 1709, 1860, 2131
BseYI	CCCAGC	1 cut(s)	824
BsgI	GTGCAG	1 cut(s)	1657
Bsh1236I	CGCG	1 cut(s)	136
BshNI	GGYRCC	2 cut(s)	914, 1742
BshVI	ATCGAT	1 cut(s)	2162
BsiHKAI	GWGCWC	2 cut(s)	549, 1167
BsiHKCI	CYCGRG	1 cut(s)	2390
BsiSI	CCGG	5 cut(s)	260, 358, 1289, 1955, 2291
BslFI	GGGAC	2 cut(s)	334, 1441
BslI	CCNNNNNNNGG	7 cut(s)	357, 526, 899, 911, 1735, 2260, 2261
BsmAI	GTCTC	4 cut(s)	979, 1034, 1586, 1745
BsmBI	CGTCTC	1 cut(s)	1745
BsmFI	GGGAC	2 cut(s)	334, 1441
BsmI	GAATGC	3 cut(s)	138, 869, 1804
Bso31I	GGTCTC	2 cut(s)	1034, 1586
BsoBI	CYCGRG	1 cut(s)	2390
Bsp119I	TTCGAA	2 cut(s)	1939, 2099
Bsp1286I	GDGCHC	3 cut(s)	549, 1167, 1994
Bsp13I	TCCGGA	1 cut(s)	2290
Bsp143I	GATC	7 cut(s)	340, 937, 1207, 1776, 1818, 1828, 1912
Bsp1720I	GCTNAGC	2 cut(s)	543, 1947
Bsp19I	CCATGG	1 cut(s)	1375
BspACI	CCGC	3 cut(s)	355, 658, 2307
BspCNI	CTCAG	8 cut(s)	390, 535, 1030, 1599, 1889, 1939, 1987, 2224
BspDI	ATCGAT	1 cut(s)	2162
BspEI	TCCGGA	1 cut(s)	2290
BspFNI	CGCG	1 cut(s)	136
BspHI	TCATGA	2 cut(s)	1140, 2167
BspLI	GGNNCC	6 cut(s)	472, 916, 1136, 1388, 1744, 2265
BspMAI	CTGCAG	1 cut(s)	2149
BspPI	GGATC	4 cut(s)	335, 945, 1826, 1836
BspT104I	TTCGAA	2 cut(s)	1939, 2099
BspT107I	GGYRCC	2 cut(s)	914, 1742
BspTNI	GGTCTC	2 cut(s)	1034, 1586
BsrBI	CCGCTC	1 cut(s)	660
BsrDI	GCAATG	3 cut(s)	1467, 1707, 2073
BsrFI	RCCGGY	1 cut(s)	1288
BsrI	ACTGG	2 cut(s)	367, 776
BssAI	RCCGGY	1 cut(s)	1288
BssECI	CCNNGG	6 cut(s)	64, 666, 804, 1375, 1423, 2391
BssMI	GATC	7 cut(s)	340, 937, 1207, 1776, 1818, 1828, 1912
BssNAI	GTATAC	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	915
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	2 cut(s)	804, 1375
Bst1107I	GTATAC	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	65, 668
Bst4CI	ACNGT	4 cut(s)	19, 277, 1888, 2347
Bst6I	CTCTTC	4 cut(s)	314, 1100, 1648, 2237
BstACI	GRCGYC	1 cut(s)	915
BstBI	TTCGAA	2 cut(s)	1939, 2099
BstC8I	GCNNGC	4 cut(s)	913, 1290, 1658, 1864
BstDSI	CCRYGG	2 cut(s)	1375, 1423
BstF5I	GGATG	5 cut(s)	47, 701, 753, 1744, 1951
BstFNI	CGCG	1 cut(s)	136
BstH2I	RGCGCY	2 cut(s)	918, 1017
BstHHI	GCGC	5 cut(s)	91, 138, 800, 917, 1016
BstKTI	GATC	7 cut(s)	343, 940, 1210, 1779, 1821, 1831, 1915
BstMAI	GTCTC	4 cut(s)	979, 1034, 1586, 1745
BstMBI	GATC	7 cut(s)	340, 937, 1207, 1776, 1818, 1828, 1912
BstMWI	GCNNNNNNNGC	2 cut(s)	587, 806
BstNI	CCWGG	2 cut(s)	65, 668
BstNSI	RCATGY	2 cut(s)	27, 1660
BstSCI	CCNGG	4 cut(s)	63, 258, 666, 1954
BstSFI	CTRYAG	4 cut(s)	1080, 1266, 2145, 2343
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	9 cut(s)	598, 602, 605, 833, 1564, 1615, 1709, 1860, 2131
BstV2I	GAAGAC	5 cut(s)	52, 296, 478, 995, 1234
BstX2I	RGATCY	2 cut(s)	340, 937
BstYI	RGATCY	2 cut(s)	340, 937
BstZ17I	GTATAC	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	2162
Bsu36I	CCTNAGG	1 cut(s)	2211
BsuTUI	ATCGAT	1 cut(s)	2162
BtgI	CCRYGG	2 cut(s)	1375, 1423
BtsCI	GGATG	5 cut(s)	47, 701, 753, 1744, 1951
BtsI	GCAGTG	1 cut(s)	1873
BtsIMutI	CAGTG	6 cut(s)	282, 561, 834, 1818, 1873, 1884
Cac8I	GCNNGC	4 cut(s)	913, 1290, 1658, 1864
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	2 cut(s)	1140, 2167
CfoI	GCGC	5 cut(s)	91, 138, 800, 917, 1016
Cfr10I	RCCGGY	1 cut(s)	1288
Cfr13I	GGNCC	6 cut(s)	212, 470, 902, 2054, 2264, 2339
ClaI	ATCGAT	1 cut(s)	2162
Csp6I	GTAC	7 cut(s)	1106, 1318, 1380, 1743, 1768, 2301, 2324
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviQI	GTAC	7 cut(s)	1106, 1318, 1380, 1743, 1768, 2301, 2324
DinI	GGCGCC	1 cut(s)	916
DpnI	GATC	7 cut(s)	342, 939, 1209, 1778, 1820, 1830, 1914
DpnII	GATC	7 cut(s)	340, 937, 1207, 1776, 1818, 1828, 1912
DraI	TTTAAA	1 cut(s)	742
EaeI	YGGCCR	4 cut(s)	158, 571, 579, 655
Eam1104I	CTCTTC	4 cut(s)	314, 1100, 1648, 2237
EarI	CTCTTC	4 cut(s)	314, 1100, 1648, 2237
EciI	GGCGGA	1 cut(s)	344
Ecl136II	GAGCTC	2 cut(s)	547, 1165
Eco130I	CCWWGG	2 cut(s)	804, 1375
Eco147I	AGGCCT	2 cut(s)	1489, 2209
Eco24I	GRGCYC	3 cut(s)	549, 1167, 1994
Eco31I	GGTCTC	2 cut(s)	1034, 1586
Eco47I	GGWCC	2 cut(s)	470, 902
Eco53kI	GAGCTC	2 cut(s)	547, 1165
Eco57I	CTGAAG	6 cut(s)	201, 795, 1778, 1985, 2031, 2281
Eco81I	CCTNAGG	1 cut(s)	2211
Eco88I	CYCGRG	1 cut(s)	2390
EcoICRI	GAGCTC	2 cut(s)	547, 1165
EcoO109I	RGGNCCY	1 cut(s)	2264
EcoRI	GAATTC	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	63, 666
EcoT14I	CCWWGG	2 cut(s)	804, 1375
EcoT22I	ATGCAT	1 cut(s)	1662
EcoT38I	GRGCYC	3 cut(s)	549, 1167, 1994
EgeI	GGCGCC	1 cut(s)	916
EheI	GGCGCC	1 cut(s)	916
ErhI	CCWWGG	2 cut(s)	804, 1375
Esp3I	CGTCTC	1 cut(s)	1745
FaqI	GGGAC	2 cut(s)	334, 1441
FbaI	TGATCA	2 cut(s)	1207, 1776
FblI	GTMKAC	2 cut(s)	242, 1531
FokI	GGATG	5 cut(s)	34, 708, 760, 1751, 1938
FriOI	GRGCYC	3 cut(s)	549, 1167, 1994
FspBI	CTAG	4 cut(s)	323, 1124, 1653, 1838
GlaI	GCGC	5 cut(s)	90, 137, 799, 916, 1015
GsaI	CCCAGC	1 cut(s)	828
HaeII	RGCGCY	2 cut(s)	918, 1017
HapII	CCGG	5 cut(s)	260, 358, 1289, 1955, 2291
HhaI	GCGC	5 cut(s)	91, 138, 800, 917, 1016
Hin1I	GRCGYC	1 cut(s)	915
Hin6I	GCGC	5 cut(s)	89, 136, 798, 915, 1014
HinP1I	GCGC	5 cut(s)	89, 136, 798, 915, 1014
HincII	GTYRAC	2 cut(s)	1873, 2283
HindII	GTYRAC	2 cut(s)	1873, 2283
HinfI	GANTC	9 cut(s)	57, 619, 1359, 1609, 1756, 1874, 1936, 2164, 2399
HpaII	CCGG	5 cut(s)	260, 358, 1289, 1955, 2291
HphI	GGTGA	3 cut(s)	80, 782, 1876
Hpy166II	GTNNAC	8 cut(s)	243, 773, 1510, 1532, 1873, 1884, 2029, 2283
Hpy188I	TCNGA	5 cut(s)	1064, 1358, 1797, 2018, 2404
Hpy188III	TCNNGA	8 cut(s)	80, 764, 1115, 1141, 1363, 1916, 2168, 2291
Hpy8I	GTNNAC	8 cut(s)	243, 773, 1510, 1532, 1873, 1884, 2029, 2283
HpyAV	CCTTC	7 cut(s)	225, 526, 893, 1261, 1500, 2199, 2368
HpyCH4III	ACNGT	4 cut(s)	19, 277, 1888, 2347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	587, 806
Hsp92I	GRCGYC	1 cut(s)	915
HspAI	GCGC	5 cut(s)	89, 136, 798, 915, 1014
KasI	GGCGCC	1 cut(s)	914
Kpn2I	TCCGGA	1 cut(s)	2290
KpnI	GGTACC	1 cut(s)	1746
KroI	GCCGGC	1 cut(s)	1288
KroNI	GCCGGC	1 cut(s)	1290
Ksp22I	TGATCA	2 cut(s)	1207, 1776
Kzo9I	GATC	7 cut(s)	340, 937, 1207, 1776, 1818, 1828, 1912
LmnI	GCTCC	5 cut(s)	96, 754, 1162, 1359, 1474
Lsp1109I	GCAGC	9 cut(s)	598, 602, 605, 833, 1564, 1615, 1709, 1860, 2131
LweI	GCATC	3 cut(s)	1960, 2168, 2318
MaeI	CTAG	4 cut(s)	323, 1124, 1653, 1838
MaeIII	GTNAC	5 cut(s)	19, 227, 832, 2183, 2246
MalI	GATC	7 cut(s)	342, 939, 1209, 1778, 1820, 1830, 1914
MbiI	CCGCTC	1 cut(s)	660
MboI	GATC	7 cut(s)	340, 937, 1207, 1776, 1818, 1828, 1912
MflI	RGATCY	2 cut(s)	340, 937
MhlI	GDGCHC	3 cut(s)	549, 1167, 1994
MlsI	TGGCCA	1 cut(s)	581
MluNI	TGGCCA	1 cut(s)	581
Mly113I	GGCGCC	1 cut(s)	915
MlyI	GAGTC	5 cut(s)	66, 1353, 1618, 1750, 1868
MmeI	TCCRAC	3 cut(s)	175, 1381, 1716
Mox20I	TGGCCA	1 cut(s)	581
Mph1103I	ATGCAT	1 cut(s)	1662
MroI	TCCGGA	1 cut(s)	2290
MroNI	GCCGGC	1 cut(s)	1288
MroXI	GAANNNNTTC	2 cut(s)	451, 2069
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	9 cut(s)	441, 557, 600, 741, 1176, 1404, 1479, 1967, 2318
MslI	CAYNNNNRTG	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	581
MspA1I	CMGCKG	4 cut(s)	596, 824, 1606, 2412
MspI	CCGG	5 cut(s)	260, 358, 1289, 1955, 2291
MspR9I	CCNGG	4 cut(s)	65, 260, 668, 1956
Mva1269I	GAATGC	3 cut(s)	138, 869, 1804
MvaI	CCWGG	2 cut(s)	65, 668
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	587, 806
NaeI	GCCGGC	1 cut(s)	1290
NarI	GGCGCC	1 cut(s)	915
NciI	CCSGG	2 cut(s)	260, 1956
NcoI	CCATGG	1 cut(s)	1375
NdeII	GATC	7 cut(s)	340, 937, 1207, 1776, 1818, 1828, 1912
NgoMIV	GCCGGC	1 cut(s)	1288
NlaIV	GGNNCC	6 cut(s)	472, 916, 1136, 1388, 1744, 2265
NmuCI	GTSAC	3 cut(s)	227, 832, 2246
NsiI	ATGCAT	1 cut(s)	1662
NspI	RCATGY	2 cut(s)	27, 1660
NspV	TTCGAA	2 cut(s)	1939, 2099
PaeI	GCATGC	1 cut(s)	1660
PagI	TCATGA	2 cut(s)	1140, 2167
PceI	AGGCCT	2 cut(s)	1489, 2209
PciI	ACATGT	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	2388
PctI	GAATGC	3 cut(s)	138, 869, 1804
PdiI	GCCGGC	1 cut(s)	1290
PdmI	GAANNNNTTC	2 cut(s)	451, 2069
PfeI	GAWTC	4 cut(s)	619, 1936, 2164, 2399
PflMI	CCANNNNNTGG	1 cut(s)	1735
PleI	GAGTC	5 cut(s)	65, 1353, 1617, 1750, 1868
PluTI	GGCGCC	1 cut(s)	918
PpsI	GAGTC	5 cut(s)	65, 1353, 1617, 1750, 1868
PscI	ACATGT	1 cut(s)	23
PshBI	ATTAAT	1 cut(s)	1404
Psp124BI	GAGCTC	2 cut(s)	549, 1167
Psp6I	CCWGG	2 cut(s)	63, 666
PspFI	CCCAGC	1 cut(s)	824
PspGI	CCWGG	2 cut(s)	63, 666
PspN4I	GGNNCC	6 cut(s)	472, 916, 1136, 1388, 1744, 2265
PspPI	GGNCC	6 cut(s)	212, 470, 902, 2054, 2264, 2339
PstI	CTGCAG	1 cut(s)	2149
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	340, 937
PvuII	CAGCTG	4 cut(s)	596, 824, 1606, 2412
RsaI	GTAC	7 cut(s)	1107, 1319, 1381, 1744, 1769, 2302, 2325
RsaNI	GTAC	7 cut(s)	1106, 1318, 1380, 1743, 1768, 2301, 2324
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	2 cut(s)	549, 1167
SaqAI	TTAA	9 cut(s)	441, 557, 600, 741, 1176, 1404, 1479, 1967, 2318
Sau3AI	GATC	7 cut(s)	340, 937, 1207, 1776, 1818, 1828, 1912
Sau96I	GGNCC	6 cut(s)	212, 470, 902, 2054, 2264, 2339
SchI	GAGTC	5 cut(s)	66, 1353, 1618, 1750, 1868
ScrFI	CCNGG	4 cut(s)	65, 260, 668, 1956
SduI	GDGCHC	3 cut(s)	549, 1167, 1994
SfaNI	GCATC	3 cut(s)	1960, 2168, 2318
SfcI	CTRYAG	4 cut(s)	1080, 1266, 2145, 2343
SfoI	GGCGCC	1 cut(s)	916
SfuI	TTCGAA	2 cut(s)	1939, 2099
SinI	GGWCC	2 cut(s)	470, 902
SmiI	ATTTAAAT	1 cut(s)	742
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	548, 976
SmoI	CTYRAG	2 cut(s)	548, 976
SphI	GCATGC	1 cut(s)	1660
SseBI	AGGCCT	2 cut(s)	1489, 2209
SsiI	CCGC	3 cut(s)	355, 658, 2307
SspDI	GGCGCC	1 cut(s)	914
SspI	AATATT	1 cut(s)	1500
SspMI	CTAG	4 cut(s)	323, 1124, 1653, 1838
SstI	GAGCTC	2 cut(s)	549, 1167
StuI	AGGCCT	2 cut(s)	1489, 2209
StyD4I	CCNGG	4 cut(s)	63, 258, 666, 1954
StyI	CCWWGG	2 cut(s)	804, 1375
SwaI	ATTTAAAT	1 cut(s)	742
TaaI	ACNGT	4 cut(s)	19, 277, 1888, 2347
TaqI	TCGA	9 cut(s)	730, 1413, 1612, 1759, 1939, 2099, 2162, 2203, 2372
TatI	WGTACW	3 cut(s)	1317, 1767, 2323
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	4 cut(s)	619, 1936, 2164, 2399
Tru1I	TTAA	9 cut(s)	441, 557, 600, 741, 1176, 1404, 1479, 1967, 2318
Tru9I	TTAA	9 cut(s)	441, 557, 600, 741, 1176, 1404, 1479, 1967, 2318
TscAI	CASTG	6 cut(s)	282, 568, 841, 1818, 1873, 1884
TseFI	GTSAC	3 cut(s)	227, 832, 2246
TseI	GCWGC	9 cut(s)	590, 593, 611, 821, 1552, 1603, 1697, 1848, 2144
Tsp45I	GTSAC	3 cut(s)	227, 832, 2246
TspDTI	ATGAA	8 cut(s)	53, 478, 842, 1157, 1243, 1497, 2062, 2156
TspGWI	ACGGA	1 cut(s)	1613
TspRI	CASTG	6 cut(s)	282, 568, 841, 1818, 1873, 1884
Van91I	CCANNNNNTGG	1 cut(s)	1735
VpaK11BI	GGWCC	2 cut(s)	470, 902
VspI	ATTAAT	1 cut(s)	1404
XapI	RAATTY	1 cut(s)	849
XceI	RCATGY	2 cut(s)	27, 1660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1736
XmiI	GTMKAC	2 cut(s)	242, 1531
XmnI	GAANNNNTTC	2 cut(s)	451, 2069
XspI	CTAG	4 cut(s)	323, 1124, 1653, 1838
Zsp2I	ATGCAT	1 cut(s)	1662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.