Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004016.1

Orthogroup ID

OG0005582

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1010

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004016.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 389 bp

atgaaagcaacatccaatggagtcttccagggtgataatcctctggattttgcgctccctcttgccatcttgcaaatatgtcttgtggttgcacttacgcgcattcttgcttattttcttcggccactaagacagcctcgtgtgattgcagagattgttggaggtatcttacttggcccttcagctcttggtcacaacaaaaagtatatcaatgcaattttcccagcaaaaagtcttacagtgcttgatactttagcaaatcttggtcttctcttctttctgttcttagtgggtttggagttagatcccaagtccctccgccggactggaaagaaagctctcagcattgctcttgcaggaattactttaccatttgtattaggaattgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

130

Amino Acids

13.92

Weight (kDa)

10.1

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23700 AT4G23700
fragaria_vesca	FvH4_5g03731 FvH4_5g03731
malus_domestica	MD00G1094100.v1.1 MD06G1097000.v1.1
prunus_persica	Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1
pyrus_communis	pycom06g09310
rosa_chinensis	RchiOBHm_Chr7g0195971
rosa_laevigata	RLG00000004078
rosa_multiflora	Rmu_co8262837.1_g000001 Rmu_sc0004016.1_g000001 Rmu_ssc0000453.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259980
rosa_rugosa	Rorug07G0027700 Rorug07G0027900 Rorug07G0028000 Rorug07G0028100
rosa_samantha	Rh7AG155200 Rh7BG157100 Rh7CG160600 Rh7DG156100
rosa_wichuraiana	Rw7G013270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	100
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	321
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	2 cut(s)	185, 338
AluI	AGCT	2 cut(s)	185, 338
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	2 cut(s)	122, 175
AspLEI	GCGC	2 cut(s)	55, 102
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	44
BauI	CACGAG	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	16, 260
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	29
BpiI	GAAGAC	2 cut(s)	16, 260
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	355
BseNI	ACTGG	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	124, 177
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	124, 177
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	2 cut(s)	124, 177
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	100
BspPI	GGATC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	304
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	128, 286, 341
BstF5I	GGATG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	55, 102
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	100
BstV2I	GAAGAC	2 cut(s)	16, 260
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	124, 177
BtsCI	GGATG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	246
CfoI	GCGC	2 cut(s)	55, 102
Cfr13I	GGNCC	1 cut(s)	176
CviJI	RGCY	5 cut(s)	124, 136, 177, 185, 338
CviKI_1	RGCY	5 cut(s)	124, 136, 177, 185, 338
DdeI	CTNAG	3 cut(s)	128, 286, 341
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	27
FaiI	YATR	2 cut(s)	79, 207
FaqI	GGGAC	1 cut(s)	298
GlaI	GCGC	2 cut(s)	54, 101
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	124, 177
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	2 cut(s)	55, 102
Hin6I	GCGC	2 cut(s)	53, 100
HinP1I	GCGC	2 cut(s)	53, 100
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	73, 92, 149, 215, 356
HpyF3I	CTNAG	3 cut(s)	128, 286, 341
HspAI	GCGC	2 cut(s)	53, 100
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	7 cut(s)	14, 29, 41, 237, 312, 335, 342
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	4 cut(s)	16, 110, 260, 265
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	3 cut(s)	216, 360, 384
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	5 cut(s)	51, 69, 147, 155, 326
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	100
NdeII	GATC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	191
PctI	GAATGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	304
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	29
SetI	ASST	3 cut(s)	166, 187, 340
Sse9I	AATT	3 cut(s)	216, 360, 384
SsiI	CCGC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	3 cut(s)	216, 360, 384
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.