Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005582

Physical Location & Seq

Genomic Coordinates Reverse (-)

55918327 .. 55924165

Gene Structure 5839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGCTGTCGAGCCACTCCCACCCCCATAAGAAAGCTAGCCGTACAGACCAAAAAGTCTCAAACCAGACACAATTTTCCGAGAGAAGTCATAGGTGGAGGGCAAAAGTGATTGGATTGAAAATTTTTACAACATCCAATGGAGTCTTCCAGGGTGATAATCCTCTGGATTTTGCGCTCCCTCTTGCCATCTTGCAAATATGTCTTGTGGTTGCACTCACGCGCATTCTTGCTTATTTTCTTCGGCCACTAAGACAGCCTCGTGTGATTGCGGAGATTGTTGGAGGTATCTTACTTGGCCCTTCAGCTCTTGGTCACAACAAAAAGTATATCAATGCAATTTTCCCAGCAAAAAGTCTTACAGTGCTTGATACTTTAGCAAATCTTGGTCTTCTCTTCTTTCTGTTCCTAGTGGGTTTGGAGTTAGATCCCAAGTCCCTCCGCCGGACTGGAAAGAAAGCTCTCAGCATAGCTCTTGCAGGAATTACTTTACCATTTGTATTAGGAATTGGAACATCATTTGCCCTAAAAGGAACTATTTCTAAAGGTGTAGATGGACCCCCATTTCTTGTCTTCATGGGAGTGGCTCTTTCTATAACGGCCTTCCCTGTTTTGGCTCGTATTTTGGCTGAGCTTAAGCTCTTAACCACTGATATTGGCCGAATGGCCATGTCAGCAGCAGCTGTTAATGATGTGGCTGCATGGATTCTTCTTGCCCTTGCCATTTCCCTCTCTGGTAGTGGCCGCTCTCCCCTGGTTTCAGTCTGGGTTCTCTTGTGTGGATGTGCTTTTGTTCTTGTATGTATATTTGCTGTTCGACCTGTCTTTAAATGGATGGTGCAGCATTGTCCTGAGGGTGAACCAGTAGAAGAATTGTATGTATGCGCTACCTTGGCTTCAGTTTTGGCAGCTGGGTTTGTCACTGAAACTATTGGAATTCATGCTCTATTTGGTGCATTCGTGCTTGGAATTATTGTTCCAAAGGAAGGACCATTTGCAGGCGCCCTTGTAGAAAAAGTTGAGGATCTTGTATCTGGTCTATTCCTCCCGTTATACTTTGTCTCAAGTGGATTGAAGACTGATATAACAACAATTCGCGGCGCTCAGTCATGGGGTCTCTTAGTCTTGGTCATTTCAACAGCCTGTTTCGGAAAGGTCATTGGCACTATAGCTGTTTCCCTCTTCTGCAAAGTACCCTTTCAGGAGGCTCTAGCTCTGGGGTTCCTCATGAATACTAAAGGGTTGGTGGAGCTCATTGTCCTTAACATTGGTAAAGACAGAAAGGTTTTGAATGATCAAACATTTGCTATCATGGTTCTCATGGCTGTCTTCACAACCTTCATTACAACACCTATAGTTATGGCAGTATATAAGCCGGCTAAAAGGTCGAGTAAAGACTACAAGTACAAAACTATTGAGAGGAAAGACCCAAATAGTCAGCTGCGACTCTTGACCTGTTTCCATGGTACAAGGAACCTACCCACGATGATTAATCTCATCGAGGCTTCCCGTGGGACTGAAAAGAGGGAACGGCTTTGTGTCTATGCAATGCACCTTATGGAGCTTAATGAAAGGCCTTCTGCAATATTGATGGTTCACAAGGCAAGAAACAATGGTCTACCCTTTTGGAATAAAGGGCAGCAGTCAGCTAATAATAATCAAGTTGTTGTGGCTTTTGAGACCTTTGAGCAGCTGAGTCGAGTGGCTATCCGTCCAATGACAGCAATCTCTTCTATAACTAGCATGCATGAGGACATCTGCACAAGTGCTGATAGTGAAAGAGCAGCAATGATAATCCTCCCATTCCACAAGCACCAGAGGTTGGATGGTACCTTTGAGACGACTCGAAGTGAGTACAGATTGATCAACCAACAGGTTCTTCAGAATGCACCATGTTCAGTGGGGATCATAGTGGACCGTGGTCTAGGTGGAAGCAGCCATGTATCTGCCAGCAATGTTGATTCAGTCTTCACTGTTCTGTTCTTTGGGGGTAGTGATGATCGTGAGGCTCTTGCTTATGGGATTCGAATGGCTGAGCATCCGGGTATCAACTTAAATATCATTCACTTCTTACCGAGCCCTGAGCTTCAAGGGGAGATAGTTAGAGTTGATGTAAACGATGGCTCAAACCCTTCAGCAGGACCAGAGGAGGACAAGTTCATTGCTGAATTGAAGCAGAAGATTTCGAATTACAGCTCAATCAAATATGAGGAGAGAGTAGTGGGAAACGCTGCAGAAACTACTGAATCTATTCGTGAGTTTAGCCAATGTAACTTGATTTTGGTTGGTCGAAGGCCTCAGGGTCAAATCGCTGCAGCATTGAATGTTAAGAGTGACTGCCCTGAATTGGGGCCTGTTGGGTGCTTGTTGACTTCTCCGGACTTCAGTACCACCGCATCAGTCTTAGTAGTACAGCAACATCATGGCCTTACATTATCAAACTCCTCAGTTAGTTTGTCGCAGGTAGTCGTGTTGCCCGAGGAAGATTCAGAAACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

833

Amino Acids

90.41

Weight (kDa)

8.67

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	74 - 452	5.2e-66	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	508 - 651	6.4e-47	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	657 - 808	5.2e-34	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23700 AT4G23700
fragaria_vesca	FvH4_5g03731 FvH4_5g03731
malus_domestica	MD00G1094100.v1.1 MD06G1097000.v1.1
prunus_persica	Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1
pyrus_communis	pycom06g09310
rosa_chinensis	RchiOBHm_Chr7g0195971
rosa_laevigata	RLG00000004078
rosa_multiflora	Rmu_co8262837.1_g000001 Rmu_sc0004016.1_g000001 Rmu_ssc0000453.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259980
rosa_rugosa	Rorug07G0027700 Rorug07G0027900 Rorug07G0028000 Rorug07G0028100
rosa_samantha	Rh7AG155200 Rh7BG157100 Rh7CG160600 Rh7DG156100
rosa_wichuraiana	Rw7G013270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	2449
Acc65I	GGTACC	1 cut(s)	1826
AccB1I	GGYRCC	2 cut(s)	998, 1826
AccB7I	CCANNNNNTGG	1 cut(s)	1819
AccBSI	CCGCTC	1 cut(s)	744
AccI	GTMKAC	1 cut(s)	1615
AccII	CGCG	2 cut(s)	220, 1095
AccIII	TCCGGA	1 cut(s)	2374
AciI	CCGC	5 cut(s)	269, 439, 742, 1095, 2391
AclWI	GGATC	3 cut(s)	419, 1029, 1910
AcoI	YGGCCR	4 cut(s)	242, 655, 663, 739
AcsI	RAATTY	2 cut(s)	120, 933
AcuI	CTGAAG	5 cut(s)	285, 879, 1862, 2115, 2365
AcyI	GRCGYC	1 cut(s)	999
AfaI	GTAC	8 cut(s)	43, 1191, 1403, 1465, 1828, 1853, 2386, 2409
AfiI	CCNNNNNNNGG	8 cut(s)	441, 610, 983, 995, 1819, 2135, 2344, 2345
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	7 cut(s)	118, 1072, 1134, 1288, 2087, 2170, 2320
AjnI	CCWGG	2 cut(s)	147, 750
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 1860, 1892
AloI	GAACNNNNNNTCC	4 cut(s)	957, 989, 2138, 2170
Alw21I	GWGCWC	1 cut(s)	1251
Alw26I	GTCTC	5 cut(s)	61, 1063, 1118, 1670, 1829
AlwI	GGATC	3 cut(s)	419, 1029, 1910
AlwNI	CAGNNNCTG	1 cut(s)	680
Ama87I	CYCGRG	1 cut(s)	2474
Aor13HI	TCCGGA	1 cut(s)	2374
ApoI	RAATTY	2 cut(s)	120, 933
AseI	ATTAAT	1 cut(s)	1488
Asp700I	GAANNNNTTC	2 cut(s)	535, 2247
Asp718I	GGTACC	1 cut(s)	1826
AspLEI	GCGC	5 cut(s)	175, 222, 884, 1001, 1100
AspS9I	GGNCC	6 cut(s)	296, 554, 986, 1912, 2138, 2348
AsuC2I	CCSGG	1 cut(s)	2040
AsuHPI	GGTGA	2 cut(s)	164, 866
AsuII	TTCGAA	2 cut(s)	2023, 2183
AsuNHI	GCTAGC	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	2474
AvaII	GGWCC	4 cut(s)	554, 986, 1912, 2138
AxyI	CCTNAGG	2 cut(s)	849, 2295
BaeI	ACNNNNGTAYC	2 cut(s)	2368, 2401
BalI	TGGCCA	1 cut(s)	665
BanI	GGYRCC	2 cut(s)	998, 1826
BanII	GRGCYC	2 cut(s)	1251, 2078
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	6 cut(s)	136, 380, 562, 1079, 1318, 1957
Bbv12I	GWGCWC	1 cut(s)	1251
BccI	CCATC	6 cut(s)	194, 545, 826, 1582, 1817, 2111
BceAI	ACGGC	3 cut(s)	24, 612, 1544
BcgI	CGANNNNNNTGC	2 cut(s)	1676, 1710
BciT130I	CCWGG	2 cut(s)	149, 752
BclI	TGATCA	2 cut(s)	1291, 1860
BcnI	CCSGG	1 cut(s)	2040
BcoDI	GTCTC	5 cut(s)	61, 1063, 1118, 1670, 1829
BfaI	CTAG	5 cut(s)	36, 407, 1208, 1737, 1922
BfmI	CTRYAG	4 cut(s)	1164, 1350, 2229, 2310
BfoI	RGCGCY	2 cut(s)	1002, 1101
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	2449
BlpI	GCTNAGC	2 cut(s)	627, 2031
Bme1390I	CCNGG	3 cut(s)	149, 752, 2040
Bme18I	GGWCC	4 cut(s)	554, 986, 1912, 2138
BmeT110I	CYCGRG	1 cut(s)	2474
BmgT120I	GGNCC	6 cut(s)	296, 554, 986, 1912, 2138, 2348
BmiI	GGNNCC	6 cut(s)	556, 1000, 1220, 1472, 1828, 2349
BmrFI	CCNGG	3 cut(s)	149, 752, 2040
BmsI	GCATC	2 cut(s)	2044, 2402
BmtI	GCTAGC	1 cut(s)	39
BoxI	GACNNNNGTC	1 cut(s)	1917
BpiI	GAAGAC	6 cut(s)	136, 380, 562, 1079, 1318, 1957
Bpu10I	CCTNAGC	1 cut(s)	2079
Bpu1102I	GCTNAGC	2 cut(s)	627, 2031
Bpu14I	TTCGAA	2 cut(s)	2023, 2183
BpuEI	CTTGAG	1 cut(s)	1045
BpuMI	CCSGG	1 cut(s)	2040
BsaHI	GRCGYC	1 cut(s)	999
BsaI	GGTCTC	2 cut(s)	1118, 1670
BsaJI	CCNNGG	7 cut(s)	148, 750, 888, 1459, 1507, 1915, 2475
BsaWI	WCCGGW	1 cut(s)	2374
BsaXI	ACNNNNNCTCC	2 cut(s)	2138, 2168
Bsc4I	CCNNNNNNNGG	8 cut(s)	441, 610, 983, 995, 1819, 2135, 2344, 2345
Bse118I	RCCGGY	1 cut(s)	1372
Bse1I	ACTGG	2 cut(s)	451, 860
Bse21I	CCTNAGG	2 cut(s)	849, 2295
Bse3DI	GCAATG	4 cut(s)	1551, 1791, 1957, 2157
BseAI	TCCGGA	1 cut(s)	2374
BseBI	CCWGG	2 cut(s)	149, 752
BseDI	CCNNGG	7 cut(s)	148, 750, 888, 1459, 1507, 1915, 2475
BseGI	GGATG	5 cut(s)	131, 785, 837, 1828, 2035
BseLI	CCNNNNNNNGG	8 cut(s)	441, 610, 983, 995, 1819, 2135, 2344, 2345
BseMI	GCAATG	4 cut(s)	1551, 1791, 1957, 2157
BseMII	CTCAG	9 cut(s)	475, 618, 840, 1115, 1682, 2022, 2070, 2309, 2457
BseNI	ACTGG	2 cut(s)	451, 860
BseRI	GAGGAG	3 cut(s)	2159, 2222, 2431
BseYI	CCCAGC	2 cut(s)	343, 908
BsgI	GTGCAG	2 cut(s)	857, 1741
Bsh1236I	CGCG	2 cut(s)	220, 1095
BshNI	GGYRCC	2 cut(s)	998, 1826
BsiHKAI	GWGCWC	1 cut(s)	1251
BsiHKCI	CYCGRG	1 cut(s)	2474
BsiSI	CCGG	4 cut(s)	442, 1373, 2039, 2375
BslFI	GGGAC	2 cut(s)	418, 1525
BslI	CCNNNNNNNGG	8 cut(s)	441, 610, 983, 995, 1819, 2135, 2344, 2345
BsmAI	GTCTC	5 cut(s)	61, 1063, 1118, 1670, 1829
BsmBI	CGTCTC	1 cut(s)	1829
BsmFI	GGGAC	2 cut(s)	418, 1525
BsmI	GAATGC	3 cut(s)	222, 953, 1888
Bso31I	GGTCTC	2 cut(s)	1118, 1670
BsoBI	CYCGRG	1 cut(s)	2474
Bsp119I	TTCGAA	2 cut(s)	2023, 2183
Bsp1286I	GDGCHC	2 cut(s)	1251, 2078
Bsp13I	TCCGGA	1 cut(s)	2374
Bsp143I	GATC	6 cut(s)	424, 1021, 1291, 1860, 1902, 1996
Bsp1720I	GCTNAGC	2 cut(s)	627, 2031
Bsp19I	CCATGG	1 cut(s)	1459
BspACI	CCGC	5 cut(s)	269, 439, 742, 1095, 2391
BspCNI	CTCAG	9 cut(s)	474, 619, 841, 1114, 1683, 2023, 2071, 2308, 2456
BspEI	TCCGGA	1 cut(s)	2374
BspFNI	CGCG	2 cut(s)	220, 1095
BspHI	TCATGA	1 cut(s)	1224
BspLI	GGNNCC	6 cut(s)	556, 1000, 1220, 1472, 1828, 2349
BspMAI	CTGCAG	2 cut(s)	2233, 2314
BspMI	ACCTGC	1 cut(s)	2449
BspOI	GCTAGC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	419, 1029, 1910
BspT104I	TTCGAA	2 cut(s)	2023, 2183
BspT107I	GGYRCC	2 cut(s)	998, 1826
BspTI	CTTAAG	1 cut(s)	632
BspTNI	GGTCTC	2 cut(s)	1118, 1670
BsrBI	CCGCTC	1 cut(s)	744
BsrDI	GCAATG	4 cut(s)	1551, 1791, 1957, 2157
BsrFI	RCCGGY	1 cut(s)	1372
BsrI	ACTGG	2 cut(s)	451, 860
BssAI	RCCGGY	1 cut(s)	1372
BssECI	CCNNGG	7 cut(s)	148, 750, 888, 1459, 1507, 1915, 2475
BssMI	GATC	6 cut(s)	424, 1021, 1291, 1860, 1902, 1996
BssNI	GRCGYC	1 cut(s)	999
BssSI	CACGAG	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	888, 1459
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	149, 752
Bst4CI	ACNGT	3 cut(s)	361, 1916, 1972
Bst6I	CTCTTC	3 cut(s)	398, 1184, 1732
BstACI	GRCGYC	1 cut(s)	999
BstAFI	CTTAAG	1 cut(s)	632
BstBI	TTCGAA	2 cut(s)	2023, 2183
BstC8I	GCNNGC	5 cut(s)	37, 997, 1374, 1742, 1948
BstDSI	CCRYGG	3 cut(s)	1459, 1507, 1915
BstENI	CCTNNNNNAGG	1 cut(s)	2133
BstF5I	GGATG	5 cut(s)	131, 785, 837, 1828, 2035
BstFNI	CGCG	2 cut(s)	220, 1095
BstH2I	RGCGCY	2 cut(s)	1002, 1101
BstHHI	GCGC	5 cut(s)	175, 222, 884, 1001, 1100
BstKTI	GATC	6 cut(s)	427, 1024, 1294, 1863, 1905, 1999
BstMAI	GTCTC	5 cut(s)	61, 1063, 1118, 1670, 1829
BstMBI	GATC	6 cut(s)	424, 1021, 1291, 1860, 1902, 1996
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 890
BstNI	CCWGG	2 cut(s)	149, 752
BstNSI	RCATGY	1 cut(s)	1744
BstPAI	GACNNNNGTC	1 cut(s)	1917
BstSCI	CCNGG	3 cut(s)	147, 750, 2038
BstSFI	CTRYAG	4 cut(s)	1164, 1350, 2229, 2310
BstUI	CGCG	2 cut(s)	220, 1095
BstV2I	GAAGAC	6 cut(s)	136, 380, 562, 1079, 1318, 1957
BstX2I	RGATCY	2 cut(s)	424, 1021
BstYI	RGATCY	2 cut(s)	424, 1021
Bsu36I	CCTNAGG	2 cut(s)	849, 2295
BtgI	CCRYGG	3 cut(s)	1459, 1507, 1915
BtsCI	GGATG	5 cut(s)	131, 785, 837, 1828, 2035
BtsIMutI	CAGTG	5 cut(s)	366, 645, 918, 1902, 1968
BveI	ACCTGC	1 cut(s)	2449
Cac8I	GCNNGC	5 cut(s)	37, 997, 1374, 1742, 1948
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	1224
CfoI	GCGC	5 cut(s)	175, 222, 884, 1001, 1100
Cfr10I	RCCGGY	1 cut(s)	1372
Cfr13I	GGNCC	6 cut(s)	296, 554, 986, 1912, 2138, 2348
Csp6I	GTAC	8 cut(s)	42, 1190, 1402, 1464, 1827, 1852, 2385, 2408
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviQI	GTAC	8 cut(s)	42, 1190, 1402, 1464, 1827, 1852, 2385, 2408
DinI	GGCGCC	1 cut(s)	1000
DpnI	GATC	6 cut(s)	426, 1023, 1293, 1862, 1904, 1998
DpnII	GATC	6 cut(s)	424, 1021, 1291, 1860, 1902, 1996
DraI	TTTAAA	1 cut(s)	826
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	4 cut(s)	242, 655, 663, 739
Eam1104I	CTCTTC	3 cut(s)	398, 1184, 1732
EarI	CTCTTC	3 cut(s)	398, 1184, 1732
EciI	GGCGGA	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	1249
Eco130I	CCWWGG	2 cut(s)	888, 1459
Eco147I	AGGCCT	2 cut(s)	1573, 2293
Eco24I	GRGCYC	2 cut(s)	1251, 2078
Eco31I	GGTCTC	2 cut(s)	1118, 1670
Eco47I	GGWCC	4 cut(s)	554, 986, 1912, 2138
Eco53kI	GAGCTC	1 cut(s)	1249
Eco57I	CTGAAG	5 cut(s)	285, 879, 1862, 2115, 2365
Eco81I	CCTNAGG	2 cut(s)	849, 2295
Eco88I	CYCGRG	1 cut(s)	2474
EcoICRI	GAGCTC	1 cut(s)	1249
EcoNI	CCTNNNNNAGG	1 cut(s)	2133
EcoO109I	RGGNCCY	1 cut(s)	2348
EcoRI	GAATTC	1 cut(s)	933
EcoRII	CCWGG	2 cut(s)	147, 750
EcoT14I	CCWWGG	2 cut(s)	888, 1459
EcoT22I	ATGCAT	1 cut(s)	1746
EcoT38I	GRGCYC	2 cut(s)	1251, 2078
EgeI	GGCGCC	1 cut(s)	1000
EheI	GGCGCC	1 cut(s)	1000
ErhI	CCWWGG	2 cut(s)	888, 1459
Esp3I	CGTCTC	1 cut(s)	1829
FaqI	GGGAC	2 cut(s)	418, 1525
FbaI	TGATCA	2 cut(s)	1291, 1860
FblI	GTMKAC	1 cut(s)	1615
FokI	GGATG	5 cut(s)	118, 792, 844, 1835, 2022
FriOI	GRGCYC	2 cut(s)	1251, 2078
FspBI	CTAG	5 cut(s)	36, 407, 1208, 1737, 1922
GlaI	GCGC	5 cut(s)	174, 221, 883, 1000, 1099
GsaI	CCCAGC	2 cut(s)	347, 912
HaeII	RGCGCY	2 cut(s)	1002, 1101
HapII	CCGG	4 cut(s)	442, 1373, 2039, 2375
HhaI	GCGC	5 cut(s)	175, 222, 884, 1001, 1100
Hin1I	GRCGYC	1 cut(s)	999
Hin6I	GCGC	5 cut(s)	173, 220, 882, 999, 1098
HinP1I	GCGC	5 cut(s)	173, 220, 882, 999, 1098
HincII	GTYRAC	1 cut(s)	2367
HindII	GTYRAC	1 cut(s)	2367
HinfI	GANTC	9 cut(s)	141, 703, 1443, 1693, 1840, 1958, 2020, 2243, 2483
HpaII	CCGG	4 cut(s)	442, 1373, 2039, 2375
HphI	GGTGA	2 cut(s)	164, 866
Hpy166II	GTNNAC	6 cut(s)	857, 1594, 1616, 1912, 2113, 2367
Hpy188I	TCNGA	4 cut(s)	79, 1148, 1881, 2488
Hpy188III	TCNNGA	8 cut(s)	164, 848, 1199, 1225, 1447, 2000, 2252, 2375
Hpy8I	GTNNAC	6 cut(s)	857, 1594, 1616, 1912, 2113, 2367
HpyAV	CCTTC	7 cut(s)	309, 610, 977, 1345, 1584, 2139, 2283
HpyCH4III	ACNGT	3 cut(s)	361, 1916, 1972
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 890
Hsp92I	GRCGYC	1 cut(s)	999
HspAI	GCGC	5 cut(s)	173, 220, 882, 999, 1098
KasI	GGCGCC	1 cut(s)	998
Kpn2I	TCCGGA	1 cut(s)	2374
KpnI	GGTACC	1 cut(s)	1830
KroI	GCCGGC	1 cut(s)	1372
KroNI	GCCGGC	1 cut(s)	1374
Ksp22I	TGATCA	2 cut(s)	1291, 1860
Kzo9I	GATC	6 cut(s)	424, 1021, 1291, 1860, 1902, 1996
LmnI	GCTCC	3 cut(s)	180, 1246, 1558
LweI	GCATC	2 cut(s)	2044, 2402
MaeI	CTAG	5 cut(s)	36, 407, 1208, 1737, 1922
MaeIII	GTNAC	4 cut(s)	311, 916, 2267, 2330
MalI	GATC	6 cut(s)	426, 1023, 1293, 1862, 1904, 1998
MbiI	CCGCTC	1 cut(s)	744
MboI	GATC	6 cut(s)	424, 1021, 1291, 1860, 1902, 1996
MflI	RGATCY	2 cut(s)	424, 1021
MhlI	GDGCHC	2 cut(s)	1251, 2078
MlsI	TGGCCA	1 cut(s)	665
MluNI	TGGCCA	1 cut(s)	665
Mly113I	GGCGCC	1 cut(s)	999
MlyI	GAGTC	4 cut(s)	150, 1437, 1702, 1834
MmeI	TCCRAC	2 cut(s)	259, 1800
Mox20I	TGGCCA	1 cut(s)	665
Mph1103I	ATGCAT	1 cut(s)	1746
MroI	TCCGGA	1 cut(s)	2374
MroNI	GCCGGC	1 cut(s)	1372
MroXI	GAANNNNTTC	2 cut(s)	535, 2247
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	9 cut(s)	633, 641, 684, 825, 1260, 1488, 1563, 2051, 2325
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	5 cut(s)	680, 908, 1438, 1690, 2496
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	4 cut(s)	442, 1373, 2039, 2375
MspR9I	CCNGG	3 cut(s)	149, 752, 2040
Mva1269I	GAATGC	3 cut(s)	222, 953, 1888
MvaI	CCWGG	2 cut(s)	149, 752
MvnI	CGCG	2 cut(s)	220, 1095
MwoI	GCNNNNNNNGC	2 cut(s)	671, 890
NaeI	GCCGGC	1 cut(s)	1374
NarI	GGCGCC	1 cut(s)	999
NciI	CCSGG	1 cut(s)	2040
NcoI	CCATGG	1 cut(s)	1459
NdeII	GATC	6 cut(s)	424, 1021, 1291, 1860, 1902, 1996
NgoMIV	GCCGGC	1 cut(s)	1372
NheI	GCTAGC	1 cut(s)	35
NlaIV	GGNNCC	6 cut(s)	556, 1000, 1220, 1472, 1828, 2349
NmuCI	GTSAC	3 cut(s)	311, 916, 2330
NsiI	ATGCAT	1 cut(s)	1746
NspI	RCATGY	1 cut(s)	1744
NspV	TTCGAA	2 cut(s)	2023, 2183
PaeI	GCATGC	1 cut(s)	1744
PagI	TCATGA	1 cut(s)	1224
PceI	AGGCCT	2 cut(s)	1573, 2293
PcsI	WCGNNNNNNNCGW	1 cut(s)	2472
PctI	GAATGC	3 cut(s)	222, 953, 1888
PdiI	GCCGGC	1 cut(s)	1374
PdmI	GAANNNNTTC	2 cut(s)	535, 2247
PfeI	GAWTC	5 cut(s)	703, 1958, 2020, 2243, 2483
PflMI	CCANNNNNTGG	1 cut(s)	1819
PleI	GAGTC	4 cut(s)	149, 1437, 1701, 1834
PluTI	GGCGCC	1 cut(s)	1002
PpsI	GAGTC	4 cut(s)	149, 1437, 1701, 1834
PshAI	GACNNNNGTC	1 cut(s)	1917
PshBI	ATTAAT	1 cut(s)	1488
Psp124BI	GAGCTC	1 cut(s)	1251
Psp6I	CCWGG	2 cut(s)	147, 750
PspFI	CCCAGC	2 cut(s)	343, 908
PspGI	CCWGG	2 cut(s)	147, 750
PspN4I	GGNNCC	6 cut(s)	556, 1000, 1220, 1472, 1828, 2349
PspPI	GGNCC	6 cut(s)	296, 554, 986, 1912, 2138, 2348
PstI	CTGCAG	2 cut(s)	2233, 2314
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	2 cut(s)	424, 1021
PvuII	CAGCTG	5 cut(s)	680, 908, 1438, 1690, 2496
RsaI	GTAC	8 cut(s)	43, 1191, 1403, 1465, 1828, 1853, 2386, 2409
RsaNI	GTAC	8 cut(s)	42, 1190, 1402, 1464, 1827, 1852, 2385, 2408
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	1251
SaqAI	TTAA	9 cut(s)	633, 641, 684, 825, 1260, 1488, 1563, 2051, 2325
Sau3AI	GATC	6 cut(s)	424, 1021, 1291, 1860, 1902, 1996
Sau96I	GGNCC	6 cut(s)	296, 554, 986, 1912, 2138, 2348
SchI	GAGTC	4 cut(s)	150, 1437, 1702, 1834
ScrFI	CCNGG	3 cut(s)	149, 752, 2040
SduI	GDGCHC	2 cut(s)	1251, 2078
SfaNI	GCATC	2 cut(s)	2044, 2402
SfcI	CTRYAG	4 cut(s)	1164, 1350, 2229, 2310
SfoI	GGCGCC	1 cut(s)	1000
SfuI	TTCGAA	2 cut(s)	2023, 2183
SinI	GGWCC	4 cut(s)	554, 986, 1912, 2138
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	2 cut(s)	632, 1060
SmoI	CTYRAG	2 cut(s)	632, 1060
SphI	GCATGC	1 cut(s)	1744
SseBI	AGGCCT	2 cut(s)	1573, 2293
SsiI	CCGC	5 cut(s)	269, 439, 742, 1095, 2391
SspDI	GGCGCC	1 cut(s)	998
SspI	AATATT	1 cut(s)	1584
SspMI	CTAG	5 cut(s)	36, 407, 1208, 1737, 1922
SstI	GAGCTC	1 cut(s)	1251
StuI	AGGCCT	2 cut(s)	1573, 2293
StyD4I	CCNGG	3 cut(s)	147, 750, 2038
StyI	CCWWGG	2 cut(s)	888, 1459
TaaI	ACNGT	3 cut(s)	361, 1916, 1972
TaqI	TCGA	9 cut(s)	8, 814, 1385, 1497, 1696, 1843, 2023, 2183, 2287
TatI	WGTACW	3 cut(s)	1401, 1851, 2407
TauI	GCSGC	2 cut(s)	744, 1098
TfiI	GAWTC	5 cut(s)	703, 1958, 2020, 2243, 2483
Tru1I	TTAA	9 cut(s)	633, 641, 684, 825, 1260, 1488, 1563, 2051, 2325
Tru9I	TTAA	9 cut(s)	633, 641, 684, 825, 1260, 1488, 1563, 2051, 2325
TscAI	CASTG	5 cut(s)	366, 652, 925, 1902, 1975
TseFI	GTSAC	3 cut(s)	311, 916, 2330
Tsp45I	GTSAC	3 cut(s)	311, 916, 2330
TspDTI	ATGAA	6 cut(s)	562, 926, 1241, 1327, 1581, 2146
TspGWI	ACGGA	1 cut(s)	1697
TspRI	CASTG	5 cut(s)	366, 652, 925, 1902, 1975
Van91I	CCANNNNNTGG	1 cut(s)	1819
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	4 cut(s)	554, 986, 1912, 2138
VspI	ATTAAT	1 cut(s)	1488
XagI	CCTNNNNNAGG	1 cut(s)	2133
XapI	RAATTY	2 cut(s)	120, 933
XceI	RCATGY	1 cut(s)	1744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1820
XmiI	GTMKAC	1 cut(s)	1615
XmnI	GAANNNNTTC	2 cut(s)	535, 2247
XspI	CTAG	5 cut(s)	36, 407, 1208, 1737, 1922
Zsp2I	ATGCAT	1 cut(s)	1746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.