Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005582

Physical Location & Seq

Genomic Coordinates Reverse (-)

1974527 .. 1975927

Gene Structure 1401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0028100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCGAACGAGAACATAGTTATCAGCCTTGAAGTTATGCGAAAGTTTAAGCGCAAGGTAAGTTGTGATAAGAAGTTAGGCCCTCTTGATCAATTGGTTTGGGTTCCTGCTGTTGCTAGCAAAAAGGAAAATGAGGTGATACAAACCAAAAGGAAGAGCAGCAAGTCTCAAGAAAGTGGTGAGAGTTCGAGTTCCGCCATCGAATCTCTGAGAAAGCTTAATGCTATGAAAGTAATGTGCAAGAGGTGGGACGAGAATGATGATGGTCATAGTCATTTAGGTCCGGAATTGAAGAAGGAGAATTTGGATTGCTTTGACTCCAAGGAAGAGAAGTCGGAGATACTCTTGGGATCCAAGGATGATCATGATCATGGTGATTTTGGTAAGAAGAGAAACACGGTTAACTTCATCTCCAAAAAAGATGAAGATGCTGTTGCCACTGAATGTCTAACACAAAATGATGATGATGAGGAGGACTGGGCTTTCGAATTCAGGAAGCGCGATGATAAGGGCAAGGGCTTGAGGACAAAATATTACTTACCACCAAGTAGTTATCATCAAGACTTGGCTAAAGAGTTTACGAGAAAGAAGGACTCGGTGTTTCACAAGAAATTTTTCAACTCCAAGGATGATGATCATAGTGATTTGGATAAGAAGAGAAAGATGGTTTCCTTCAACTGCAGGAAAGAGAACTCCTCTGCTATTGGATCTCGAAGAAACTATGGCATACAAATTAGAGAGCCCCGTAGCAGGAGTTATGAGGATGATGGTGTCGATGATGAGGACTGGGATTTCAAATCCAAGAAGAGCAAGAATAAGGGCAAGGGTTTGATGATGTATAGGGAGAAGAAGAGGCTGAAATCTAACTTACCACCAAGTACTACTCATCAAAACTTGCCTGAAAAGTTCAAGAGAAAAATTGAAACTATGGGAGGGGATAGTGATAAGGCGCAGTTGGTGTATCAGAAGAGATTGTACCCTTCAGACCTTGCGCGGCAGCAAAACCGGTTGTCAATGCCTGCCAACCAACTCCTGTGCAATTTCTTGGAACCGGATGAAGTGAAAAGGCTTGAAAATAGACAGTTCATGATCATCACAATAATAGACCCCATGGGCGAAGAGGAAGCAATGTGCTTCAAGCAGTGGACCTACAAGGAAACTGTCAAATCGTATGTGTTGATAACTCGATGGACTGATGTTGCCAAGAAAAATAAACTTAAACCGGAAGATCTGATCCAAGTTTGGTCATTCCGGGACCGCAAGAATAACCTTCACTTGGCTGTTGTCAAGAGGGATGAGAATAGTGACGCCGGTGGGTGTAGTAGTAGTGGTAGTAATGCTAATACTACTGTCGGTGGTGGTGAAGGTAGTAGTGGAGATCAGCTAGGGAAGATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

466

Amino Acids

53.66

Weight (kDa)

8.97

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	304 - 402	1.5e-12	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23700 AT4G23700
fragaria_vesca	FvH4_5g03731 FvH4_5g03731
malus_domestica	MD00G1094100.v1.1 MD06G1097000.v1.1
prunus_persica	Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1
pyrus_communis	pycom06g09310
rosa_chinensis	RchiOBHm_Chr7g0195971
rosa_laevigata	RLG00000004078
rosa_multiflora	Rmu_co8262837.1_g000001 Rmu_sc0004016.1_g000001 Rmu_ssc0000453.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259980
rosa_rugosa	Rorug07G0027700 Rorug07G0027900 Rorug07G0028000 Rorug07G0028100
rosa_samantha	Rh7AG155200 Rh7BG157100 Rh7CG160600 Rh7DG156100
rosa_wichuraiana	Rw7G013270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	501, 994
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	3 cut(s)	195, 994, 1258
AclWI	GGATC	4 cut(s)	345, 358, 715, 1228
AcsI	RAATTY	3 cut(s)	301, 488, 611
AcuI	CTGAAG	1 cut(s)	966
AcyI	GRCGYC	1 cut(s)	1308
AfaI	GTAC	2 cut(s)	880, 977
AfiI	CCNNNNNNNGG	2 cut(s)	750, 1276
AgeI	ACCGGT	1 cut(s)	1005
AgsI	TTSAA	9 cut(s)	32, 292, 619, 676, 796, 910, 923, 1073, 1138
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	2 cut(s)	217, 1384
AluI	AGCT	2 cut(s)	217, 1384
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	4 cut(s)	345, 358, 715, 1228
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	159, 997
ApoI	RAATTY	3 cut(s)	301, 488, 611
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AsiGI	ACCGGT	1 cut(s)	1005
Asp700I	GAANNNNTTC	1 cut(s)	614
AspLEI	GCGC	4 cut(s)	54, 501, 952, 994
AspS9I	GGNCC	4 cut(s)	80, 281, 1146, 1255
AsuC2I	CCSGG	1 cut(s)	1253
AsuHPI	GGTGA	4 cut(s)	148, 191, 386, 1373
AsuII	TTCGAA	1 cut(s)	486
AsuNHI	GCTAGC	1 cut(s)	116
AvaII	GGWCC	3 cut(s)	281, 1146, 1255
BamHI	GGATCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	744
BarI	GAAGNNNNNNTAC	2 cut(s)	959, 991
BbvI	GCAGC	2 cut(s)	171, 1009
BccI	CCATC	6 cut(s)	206, 257, 658, 761, 1182, 1387
BclI	TGATCA	5 cut(s)	88, 361, 367, 634, 1089
BcnI	CCSGG	1 cut(s)	1253
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	2 cut(s)	117, 1385
BfmI	CTRYAG	1 cut(s)	679
BglII	AGATCT	1 cut(s)	1228
BisI	GCNGC	3 cut(s)	160, 995, 998
BlsI	GCNGC	3 cut(s)	161, 996, 999
BmcAI	AGTACT	1 cut(s)	880
Bme1390I	CCNGG	1 cut(s)	1253
Bme18I	GGWCC	3 cut(s)	281, 1146, 1255
BmgT120I	GGNCC	4 cut(s)	80, 281, 1146, 1255
BmiI	GGNNCC	4 cut(s)	105, 352, 1050, 1256
BmrFI	CCNGG	1 cut(s)	1253
BmrI	ACTGGG	2 cut(s)	487, 796
BmsI	GCATC	1 cut(s)	418
BmtI	GCTAGC	1 cut(s)	120
BmuI	ACTGGG	2 cut(s)	487, 796
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
Bpu14I	TTCGAA	1 cut(s)	486
BpuEI	CTTGAG	2 cut(s)	153, 541
BpuMI	CCSGG	1 cut(s)	1253
BsaBI	GATNNNNATC	2 cut(s)	366, 633
BsaHI	GRCGYC	1 cut(s)	1308
BsaJI	CCNNGG	4 cut(s)	321, 354, 624, 1110
BsaWI	WCCGGW	4 cut(s)	283, 1005, 1051, 1222
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	750, 1276
Bse118I	RCCGGY	2 cut(s)	1005, 1310
Bse1I	ACTGG	2 cut(s)	482, 791
Bse3DI	GCAATG	1 cut(s)	1134
Bse8I	GATNNNNATC	2 cut(s)	366, 633
BseAI	TCCGGA	1 cut(s)	283
BseDI	CCNNGG	4 cut(s)	321, 354, 624, 1110
BseGI	GGATG	5 cut(s)	364, 634, 769, 1060, 1300
BseJI	GATNNNNATC	2 cut(s)	366, 633
BseLI	CCNNNNNNNGG	2 cut(s)	750, 1276
BseMI	GCAATG	1 cut(s)	1134
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	482, 791
BseRI	GAGGAG	2 cut(s)	485, 685
BseXI	GCAGC	2 cut(s)	171, 1009
Bsh1236I	CGCG	2 cut(s)	501, 994
BshFI	GGCC	1 cut(s)	81
BshTI	ACCGGT	1 cut(s)	1005
BsiSI	CCGG	6 cut(s)	284, 1006, 1052, 1223, 1252, 1311
BslFI	GGGAC	2 cut(s)	263, 1268
BslI	CCNNNNNNNGG	2 cut(s)	750, 1276
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	2 cut(s)	263, 1268
BsnI	GGCC	1 cut(s)	81
Bsp119I	TTCGAA	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp13I	TCCGGA	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	1110
BspACI	CCGC	3 cut(s)	195, 994, 1258
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	2 cut(s)	501, 994
BspHI	TCATGA	2 cut(s)	364, 1086
BspLI	GGNNCC	4 cut(s)	105, 352, 1050, 1256
BspMAI	CTGCAG	1 cut(s)	683
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	4 cut(s)	345, 358, 715, 1228
BspQI	GCTCTTC	2 cut(s)	149, 800
BspT104I	TTCGAA	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	1134
BsrFI	RCCGGY	2 cut(s)	1005, 1310
BsrI	ACTGG	2 cut(s)	482, 791
BssAI	RCCGGY	2 cut(s)	1005, 1310
BssECI	CCNNGG	4 cut(s)	321, 354, 624, 1110
BssNI	GRCGYC	1 cut(s)	1308
BssT1I	CCWWGG	4 cut(s)	321, 354, 624, 1110
Bst4CI	ACNGT	4 cut(s)	400, 1083, 1162, 1351
Bst6I	CTCTTC	8 cut(s)	149, 321, 383, 650, 800, 845, 962, 1113
BstACI	GRCGYC	1 cut(s)	1308
BstBI	TTCGAA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	118, 1020
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	1110
BstF5I	GGATG	5 cut(s)	364, 634, 769, 1060, 1300
BstFNI	CGCG	2 cut(s)	501, 994
BstHHI	GCGC	4 cut(s)	54, 501, 952, 994
BstMAI	GTCTC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	1251
BstSFI	CTRYAG	1 cut(s)	679
BstUI	CGCG	2 cut(s)	501, 994
BstV1I	GCAGC	2 cut(s)	171, 1009
BstX2I	RGATCY	3 cut(s)	350, 707, 1228
BstYI	RGATCY	3 cut(s)	350, 707, 1228
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	1110
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	5 cut(s)	364, 634, 769, 1060, 1300
BtsI	GCAGTG	1 cut(s)	1148
BtsIMutI	CAGTG	2 cut(s)	438, 1148
Cac8I	GCNNGC	2 cut(s)	118, 1020
CciI	TCATGA	2 cut(s)	364, 1086
CfoI	GCGC	4 cut(s)	54, 501, 952, 994
Cfr10I	RCCGGY	2 cut(s)	1005, 1310
Cfr13I	GGNCC	4 cut(s)	80, 281, 1146, 1255
CseI	GACGC	1 cut(s)	1316
Csp6I	GTAC	2 cut(s)	879, 976
CspAI	ACCGGT	1 cut(s)	1005
CviAII	CATG	4 cut(s)	365, 371, 1087, 1111
CviQI	GTAC	2 cut(s)	879, 976
DdeI	CTNAG	1 cut(s)	209
Eam1104I	CTCTTC	8 cut(s)	149, 321, 383, 650, 800, 845, 962, 1113
EarI	CTCTTC	8 cut(s)	149, 321, 383, 650, 800, 845, 962, 1113
EciI	GGCGGA	1 cut(s)	184
Eco130I	CCWWGG	4 cut(s)	321, 354, 624, 1110
Eco24I	GRGCYC	1 cut(s)	744
Eco47I	GGWCC	3 cut(s)	281, 1146, 1255
Eco57I	CTGAAG	1 cut(s)	966
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	488
EcoT14I	CCWWGG	4 cut(s)	321, 354, 624, 1110
EcoT38I	GRGCYC	1 cut(s)	744
ErhI	CCWWGG	4 cut(s)	321, 354, 624, 1110
FaeI	CATG	4 cut(s)	368, 374, 1090, 1114
FaqI	GGGAC	2 cut(s)	263, 1268
FatI	CATG	4 cut(s)	364, 370, 1086, 1110
FbaI	TGATCA	5 cut(s)	88, 361, 367, 634, 1089
Fnu4HI	GCNGC	3 cut(s)	160, 995, 998
FokI	GGATG	5 cut(s)	371, 641, 776, 1067, 1307
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	3 cut(s)	160, 995, 998
FspBI	CTAG	2 cut(s)	117, 1385
GlaI	GCGC	4 cut(s)	53, 500, 951, 993
GluI	GCNGC	3 cut(s)	160, 995, 998
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	6 cut(s)	284, 1006, 1052, 1223, 1252, 1311
HgaI	GACGC	1 cut(s)	1316
HhaI	GCGC	4 cut(s)	54, 501, 952, 994
Hin1I	GRCGYC	1 cut(s)	1308
Hin1II	CATG	4 cut(s)	368, 374, 1090, 1114
Hin6I	GCGC	4 cut(s)	52, 499, 950, 992
HinP1I	GCGC	4 cut(s)	52, 499, 950, 992
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	3 cut(s)	203, 317, 593
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	6 cut(s)	284, 1006, 1052, 1223, 1252, 1311
HphI	GGTGA	4 cut(s)	148, 191, 386, 1373
Hpy166II	GTNNAC	3 cut(s)	403, 579, 1146
Hpy188I	TCNGA	5 cut(s)	210, 337, 966, 985, 1233
Hpy8I	GTNNAC	3 cut(s)	403, 579, 1146
HpyAV	CCTTC	6 cut(s)	289, 583, 682, 990, 1280, 1358
HpyCH4III	ACNGT	4 cut(s)	400, 1083, 1162, 1351
HpyCH4V	TGCA	3 cut(s)	240, 681, 1038
HpyF3I	CTNAG	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	1308
Hsp92II	CATG	4 cut(s)	368, 374, 1090, 1114
HspAI	GCGC	4 cut(s)	52, 499, 950, 992
Kpn2I	TCCGGA	1 cut(s)	283
Ksp22I	TGATCA	5 cut(s)	88, 361, 367, 634, 1089
KspAI	GTTAAC	1 cut(s)	403
LguI	GCTCTTC	2 cut(s)	149, 800
Lsp1109I	GCAGC	2 cut(s)	171, 1009
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	117, 1385
MaeIII	GTNAC	1 cut(s)	1304
MfeI	CAATTG	1 cut(s)	92
MflI	RGATCY	3 cut(s)	350, 707, 1228
MhlI	GDGCHC	1 cut(s)	744
MluCI	AATT	8 cut(s)	92, 287, 301, 488, 611, 732, 918, 1039
MlyI	GAGTC	2 cut(s)	311, 587
MmeI	TCCRAC	1 cut(s)	315
MroI	TCCGGA	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	4 cut(s)	48, 219, 402, 1218
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	6 cut(s)	284, 1006, 1052, 1223, 1252, 1311
MspR9I	CCNGG	1 cut(s)	1253
MunI	CAATTG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	501, 994
NciI	CCSGG	1 cut(s)	1253
NcoI	CCATGG	1 cut(s)	1110
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	4 cut(s)	368, 374, 1090, 1114
NlaIV	GGNNCC	4 cut(s)	105, 352, 1050, 1256
NmuCI	GTSAC	1 cut(s)	1304
NspV	TTCGAA	1 cut(s)	486
PagI	TCATGA	2 cut(s)	364, 1086
PciSI	GCTCTTC	2 cut(s)	149, 800
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	1251
PinAI	ACCGGT	1 cut(s)	1005
PkrI	GCNGC	3 cut(s)	161, 996, 999
PleI	GAGTC	2 cut(s)	311, 587
PpsI	GAGTC	2 cut(s)	311, 587
PspN4I	GGNNCC	4 cut(s)	105, 352, 1050, 1256
PspPI	GGNCC	4 cut(s)	80, 281, 1146, 1255
PstI	CTGCAG	1 cut(s)	683
PsuI	RGATCY	3 cut(s)	350, 707, 1228
RsaI	GTAC	2 cut(s)	880, 977
RsaNI	GTAC	2 cut(s)	879, 976
RseI	CAYNNNNRTG	1 cut(s)	369
SapI	GCTCTTC	2 cut(s)	149, 800
SaqAI	TTAA	4 cut(s)	48, 219, 402, 1218
SatI	GCNGC	3 cut(s)	160, 995, 998
Sau96I	GGNCC	4 cut(s)	80, 281, 1146, 1255
ScaI	AGTACT	1 cut(s)	880
SchI	GAGTC	2 cut(s)	311, 587
ScrFI	CCNGG	1 cut(s)	1253
SduI	GDGCHC	1 cut(s)	744
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	679
SfuI	TTCGAA	1 cut(s)	486
SgrAI	CRCCGGYG	1 cut(s)	1310
SinI	GGWCC	3 cut(s)	281, 1146, 1255
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	168, 520
SmoI	CTYRAG	2 cut(s)	168, 520
Sse9I	AATT	8 cut(s)	92, 287, 301, 488, 611, 732, 918, 1039
SsiI	CCGC	3 cut(s)	195, 994, 1258
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	2 cut(s)	117, 1385
StyD4I	CCNGG	1 cut(s)	1251
StyI	CCWWGG	4 cut(s)	321, 354, 624, 1110
TaaI	ACNGT	4 cut(s)	400, 1083, 1162, 1351
TaqI	TCGA	6 cut(s)	188, 201, 486, 712, 774, 1186
TasI	AATT	8 cut(s)	92, 287, 301, 488, 611, 732, 918, 1039
TatI	WGTACW	1 cut(s)	878
TauI	GCSGC	1 cut(s)	997
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	4 cut(s)	48, 219, 402, 1218
Tru9I	TTAA	4 cut(s)	48, 219, 402, 1218
TscAI	CASTG	2 cut(s)	445, 1148
TseFI	GTSAC	1 cut(s)	1304
TseI	GCWGC	2 cut(s)	159, 997
Tsp45I	GTSAC	1 cut(s)	1304
TspDTI	ATGAA	5 cut(s)	242, 397, 438, 1071, 1075
TspRI	CASTG	2 cut(s)	445, 1148
VpaK11BI	GGWCC	3 cut(s)	281, 1146, 1255
XapI	RAATTY	3 cut(s)	301, 488, 611
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	2 cut(s)	117, 1385
ZrmI	AGTACT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.