Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005582

Physical Location & Seq

Genomic Coordinates Forward (+)

13224530 .. 13231075

Gene Structure 6546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG160600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGCACATTTACAGGAAAGAGTTTAACTTTAAATTGCTTTTTCTGCAGGGAGGTATCTTACTTGGCCCTTCAGCTCTTGGTCACAACAAAAAGTATATCAATGCAATTTTCCCAGCGAAAAGTCTTACAGTGCTTGATACTTTAGCAAATCTTGGTCTTCTCTTCTTTCTGTTCCTAGTGGGTTTGGAGTTAGATCCCAAGTCCCTCCGCCGGACTGGAAAGAAAGCTCTCAGCATTGCTCTTGCAGGAATTACTTTACCATTTGTATTAGGAATTGGAACATCATTTGCCCTAAAAGGAACTATTTCTAAAGGTGTAGATGGACCCCCATTTCTTGTCTTCATGGGAGTGGCTCTTTCTATAACTGCCTTCCCTGTTTTGGCTCGTATTTTGGCTGAGCTCAAGCTCTTAACCACTGATATTGGCCGAATGGCCATGTCAGCAGCAGCTGTTAATGATGTGGCTGCATGGATTCTTCTTGCCCTTGCCATTTCCCTCTCTGGAAGTGGCCGCTCTCCCCTGGTTTCACTCTGGGTTCTCTTGTGTGGATGTGCTTTTGTTCTTGTATGTATATTTGCTGTTCGACCTGTCTTTAAATGGATGGTGCAGCGTTGTCCTGAGGGTGAACCAGTAGAAGAATTGTATGTATGCGCTACCTTGGCTTCAGTTTTGGCAGCTGGGTTTGTCACTGAAACTATTGGAATTCATGCTCTATTTGGTGCATTCGTGCTTGGAATTATTGTTCCAAAGGAAGGACCATTTGCAGGCGCCCTTGTAGAAAAAGTTGAGGATCTTGTATCTGGTCTATTCCTCCCATTATACTTTGTCTCAAGTGGATTGAAGACTGATATAACAACAATTCGCGGCGCTCAGTCATGGGGTCTCTTAGTCTTGGTCATTTCAACAGCTTGTTTCGGAAAGGTCATTGGCACTATAGCTGTTTCCCTCTTCTGCAAAGTACCCTTTCAGGAGGCTCTGGCTCTGGGGTTCCTCATGAATACTAAAGGGTTGGTGGAGCTCATTGTCCTTAACATTGGTAAAGACAGAAAGGTTTTGAATGATCAAACATTTGCTATCATGGTTCTCATGGCTGTCTTCACAACCTTCATTACAACACCTATAGTTATGGCAGTATATAAGCCGGCTAAAAGGTTGAGTAAAGATTACAAGTACAAAACTGTTGAGAGGAAAGACCCAAATAGTCAGCTCCGACTCTTGACCTGTTTCCATGGGACAAGGAACCTACCCACGATGATTAATCTCATCGAGGCTTCCCGTGGGACTGAAAAGAGGGAACGGCTTTGTGTCTATGCAATGCACCTTATGGAGCTTAATGAAAGGCCTTCTGCAATATTGATGGTTCACAAGGCAAGAAACAATGGTCTACCCTTTTGGAATAAAGGGCAGCAGTCAGCTAATAATAATCAAGTTGTTGTGGCTTTTGAGACCTTTGAGCAGCTGAGTCGAGTGGCTATCCGTCCAATGACAGCAATCTCTTCTATAAATAGCATGCATGAGGACATCTGCACAAGTGCTGATAGTGAAAGAGCAGCAATGATAATCCTTCCATTCCACAAGCACCAGAGGTTGGATGGTACCTTTGAGACGACTCGAAGTGAGTACAGATTGATCAACCAACAGGTTCTTCAGAATGCACCATGTTCAGTGGGGATCATAGTGGACCGTGGTCTAGGTGGAAGCAGCCATGTATCTGCCAGCAATGTTGATTCAGTCTTCACTGTTCTGTTCTTTGGGGGTAGTGATGATCGTGAGGCTCTTGCTTATGGGATTCGAATGGCTGAGCATCCGGGTATCAACTTAAATATCATTCACTTCTTACCGAGCCCTGAGCTTCAAGGGGAGATAGTTAGAGTTGATGTAAATGATGGCTCAAACCCTTCAGCAGGACCAGAGGAGGACAAGTTCATTGCTGAATTGAAGCAGAAGATTTCGAATTACAGCTCAATCAAATATGAGGAGAGAGTAGTGGGAAACGCTGCAGAAACTACTGAAACTATTCGTGAGTTTAGCCAATGTAACTTGATTTTGGTTGGTCGAAGGCCTCAGGGTCAAATCGCTGCTGCATTGAATGTCAAGAGTGACTGCCCTGAATTGGGTCCTGTTGGGTGCTTGTTGACTTCTCCGGACTTCAGTACCACCGCATCGGTCTTAGTAGTACAGCAACATCATGGCCTTACATTATCAAACTCATCAGTTAGTTTGTCGAAGGTAGTCGTGTTGCCCGAGGAAAATTCAGAAACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

755

Amino Acids

82.03

Weight (kDa)

8.41

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	18 - 375	5.7e-62	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	431 - 574	2.8e-47	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	580 - 731	2.8e-34	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23700 AT4G23700
fragaria_vesca	FvH4_5g03731 FvH4_5g03731
malus_domestica	MD00G1094100.v1.1 MD06G1097000.v1.1
prunus_persica	Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1
pyrus_communis	pycom06g09310
rosa_chinensis	RchiOBHm_Chr7g0195971
rosa_laevigata	RLG00000004078
rosa_multiflora	Rmu_co8262837.1_g000001 Rmu_sc0004016.1_g000001 Rmu_ssc0000453.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259980
rosa_rugosa	Rorug07G0027700 Rorug07G0027900 Rorug07G0028000 Rorug07G0028100
rosa_samantha	Rh7AG155200 Rh7BG157100 Rh7CG160600 Rh7DG156100
rosa_wichuraiana	Rw7G013270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1595
AccB1I	GGYRCC	2 cut(s)	767, 1595
AccB7I	CCANNNNNTGG	1 cut(s)	1588
AccBSI	CCGCTC	1 cut(s)	513
AccI	GTMKAC	1 cut(s)	1384
AccII	CGCG	1 cut(s)	864
AccIII	TCCGGA	1 cut(s)	2143
AciI	CCGC	4 cut(s)	208, 511, 864, 2160
AclWI	GGATC	3 cut(s)	188, 798, 1679
AcoI	YGGCCR	3 cut(s)	424, 432, 508
AcsI	RAATTY	2 cut(s)	702, 2251
AcuI	CTGAAG	5 cut(s)	54, 648, 1631, 1884, 2134
AcyI	GRCGYC	1 cut(s)	768
AfaI	GTAC	6 cut(s)	960, 1172, 1597, 1622, 2155, 2178
AfiI	CCNNNNNNNGG	8 cut(s)	210, 379, 752, 764, 1588, 1904, 2113, 2114
AgsI	TTSAA	6 cut(s)	841, 903, 1057, 1856, 1939, 2089
AjnI	CCWGG	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	1629, 1661
AloI	GAACNNNNNNTCC	4 cut(s)	726, 758, 1907, 1939
Alw21I	GWGCWC	2 cut(s)	402, 1020
Alw26I	GTCTC	4 cut(s)	832, 887, 1439, 1598
AlwI	GGATC	3 cut(s)	188, 798, 1679
AlwNI	CAGNNNCTG	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	2243
Aor13HI	TCCGGA	1 cut(s)	2143
AoxI	GGCC	7 cut(s)	64, 424, 432, 508, 1340, 2060, 2191
ApoI	RAATTY	2 cut(s)	702, 2251
AseI	ATTAAT	1 cut(s)	1257
Asp700I	GAANNNNTTC	2 cut(s)	304, 2016
Asp718I	GGTACC	1 cut(s)	1595
AspLEI	GCGC	3 cut(s)	653, 770, 869
AspS9I	GGNCC	6 cut(s)	65, 323, 755, 1681, 1907, 2117
AsuC2I	CCSGG	1 cut(s)	1809
AsuHPI	GGTGA	1 cut(s)	635
AsuII	TTCGAA	2 cut(s)	1792, 1952
AvaI	CYCGRG	1 cut(s)	2243
AvaII	GGWCC	5 cut(s)	323, 755, 1681, 1907, 2117
AxyI	CCTNAGG	2 cut(s)	618, 2064
BaeI	ACNNNNGTAYC	2 cut(s)	2137, 2170
BalI	TGGCCA	1 cut(s)	434
BanI	GGYRCC	2 cut(s)	767, 1595
BanII	GRGCYC	3 cut(s)	402, 1020, 1847
BbsI	GAAGAC	5 cut(s)	149, 331, 848, 1087, 1726
Bbv12I	GWGCWC	2 cut(s)	402, 1020
BccI	CCATC	5 cut(s)	314, 595, 1351, 1586, 1880
BceAI	ACGGC	1 cut(s)	1313
BcgI	CGANNNNNNTGC	2 cut(s)	1445, 1479
BciT130I	CCWGG	1 cut(s)	521
BclI	TGATCA	2 cut(s)	1060, 1629
BcnI	CCSGG	1 cut(s)	1809
BcoDI	GTCTC	4 cut(s)	832, 887, 1439, 1598
BfaI	CTAG	2 cut(s)	176, 1691
BfmI	CTRYAG	4 cut(s)	44, 933, 1119, 1998
BfoI	RGCGCY	2 cut(s)	771, 870
BlpI	GCTNAGC	2 cut(s)	396, 1800
Bme1390I	CCNGG	2 cut(s)	521, 1809
Bme18I	GGWCC	5 cut(s)	323, 755, 1681, 1907, 2117
BmeT110I	CYCGRG	1 cut(s)	2243
BmgT120I	GGNCC	6 cut(s)	65, 323, 755, 1681, 1907, 2117
BmiI	GGNNCC	6 cut(s)	325, 769, 989, 1241, 1597, 2118
BmrFI	CCNGG	2 cut(s)	521, 1809
BmsI	GCATC	2 cut(s)	1813, 2171
BoxI	GACNNNNGTC	1 cut(s)	1686
BpiI	GAAGAC	5 cut(s)	149, 331, 848, 1087, 1726
Bpu10I	CCTNAGC	1 cut(s)	1848
Bpu1102I	GCTNAGC	2 cut(s)	396, 1800
Bpu14I	TTCGAA	2 cut(s)	1792, 1952
BpuEI	CTTGAG	2 cut(s)	386, 814
BpuMI	CCSGG	1 cut(s)	1809
BsaHI	GRCGYC	1 cut(s)	768
BsaI	GGTCTC	2 cut(s)	887, 1439
BsaJI	CCNNGG	6 cut(s)	519, 657, 1228, 1276, 1684, 2244
BsaWI	WCCGGW	1 cut(s)	2143
BsaXI	ACNNNNNCTCC	2 cut(s)	1907, 1937
Bsc4I	CCNNNNNNNGG	8 cut(s)	210, 379, 752, 764, 1588, 1904, 2113, 2114
Bse118I	RCCGGY	1 cut(s)	1141
Bse1I	ACTGG	2 cut(s)	220, 629
Bse21I	CCTNAGG	2 cut(s)	618, 2064
Bse3DI	GCAATG	5 cut(s)	234, 1320, 1560, 1726, 1926
BseAI	TCCGGA	1 cut(s)	2143
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	6 cut(s)	519, 657, 1228, 1276, 1684, 2244
BseGI	GGATG	4 cut(s)	554, 606, 1597, 1804
BseLI	CCNNNNNNNGG	8 cut(s)	210, 379, 752, 764, 1588, 1904, 2113, 2114
BseMI	GCAATG	5 cut(s)	234, 1320, 1560, 1726, 1926
BseMII	CTCAG	8 cut(s)	244, 387, 609, 884, 1451, 1791, 1839, 2078
BseNI	ACTGG	2 cut(s)	220, 629
BseRI	GAGGAG	2 cut(s)	1928, 1991
BseYI	CCCAGC	2 cut(s)	112, 677
BsgI	GTGCAG	2 cut(s)	626, 1510
Bsh1236I	CGCG	1 cut(s)	864
BshFI	GGCC	7 cut(s)	66, 426, 434, 510, 1342, 2062, 2193
BshNI	GGYRCC	2 cut(s)	767, 1595
BsiHKAI	GWGCWC	2 cut(s)	402, 1020
BsiHKCI	CYCGRG	1 cut(s)	2243
BsiSI	CCGG	4 cut(s)	211, 1142, 1808, 2144
BslFI	GGGAC	3 cut(s)	187, 1246, 1294
BslI	CCNNNNNNNGG	8 cut(s)	210, 379, 752, 764, 1588, 1904, 2113, 2114
BsmAI	GTCTC	4 cut(s)	832, 887, 1439, 1598
BsmBI	CGTCTC	1 cut(s)	1598
BsmFI	GGGAC	3 cut(s)	187, 1246, 1294
BsmI	GAATGC	2 cut(s)	722, 1657
BsnI	GGCC	7 cut(s)	66, 426, 434, 510, 1342, 2062, 2193
Bso31I	GGTCTC	2 cut(s)	887, 1439
BsoBI	CYCGRG	1 cut(s)	2243
Bsp119I	TTCGAA	2 cut(s)	1792, 1952
Bsp1286I	GDGCHC	3 cut(s)	402, 1020, 1847
Bsp13I	TCCGGA	1 cut(s)	2143
Bsp143I	GATC	6 cut(s)	193, 790, 1060, 1629, 1671, 1765
Bsp1720I	GCTNAGC	2 cut(s)	396, 1800
Bsp19I	CCATGG	1 cut(s)	1228
BspACI	CCGC	4 cut(s)	208, 511, 864, 2160
BspANI	GGCC	7 cut(s)	66, 426, 434, 510, 1342, 2062, 2193
BspCNI	CTCAG	8 cut(s)	243, 388, 610, 883, 1452, 1792, 1840, 2077
BspEI	TCCGGA	1 cut(s)	2143
BspFNI	CGCG	1 cut(s)	864
BspHI	TCATGA	1 cut(s)	993
BspLI	GGNNCC	6 cut(s)	325, 769, 989, 1241, 1597, 2118
BspMAI	CTGCAG	2 cut(s)	48, 2002
BspPI	GGATC	3 cut(s)	188, 798, 1679
BspT104I	TTCGAA	2 cut(s)	1792, 1952
BspT107I	GGYRCC	2 cut(s)	767, 1595
BspTNI	GGTCTC	2 cut(s)	887, 1439
BsrBI	CCGCTC	1 cut(s)	513
BsrDI	GCAATG	5 cut(s)	234, 1320, 1560, 1726, 1926
BsrFI	RCCGGY	1 cut(s)	1141
BsrI	ACTGG	2 cut(s)	220, 629
BssAI	RCCGGY	1 cut(s)	1141
BssECI	CCNNGG	6 cut(s)	519, 657, 1228, 1276, 1684, 2244
BssMI	GATC	6 cut(s)	193, 790, 1060, 1629, 1671, 1765
BssNI	GRCGYC	1 cut(s)	768
BssT1I	CCWWGG	2 cut(s)	657, 1228
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	4 cut(s)	130, 1180, 1685, 1741
Bst6I	CTCTTC	3 cut(s)	167, 953, 1501
BstACI	GRCGYC	1 cut(s)	768
BstBI	TTCGAA	2 cut(s)	1792, 1952
BstC8I	GCNNGC	4 cut(s)	766, 1143, 1511, 1717
BstDSI	CCRYGG	3 cut(s)	1228, 1276, 1684
BstENI	CCTNNNNNAGG	1 cut(s)	1902
BstF5I	GGATG	4 cut(s)	554, 606, 1597, 1804
BstFNI	CGCG	1 cut(s)	864
BstH2I	RGCGCY	2 cut(s)	771, 870
BstHHI	GCGC	3 cut(s)	653, 770, 869
BstKTI	GATC	6 cut(s)	196, 793, 1063, 1632, 1674, 1768
BstMAI	GTCTC	4 cut(s)	832, 887, 1439, 1598
BstMBI	GATC	6 cut(s)	193, 790, 1060, 1629, 1671, 1765
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 440, 659
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	1513
BstPAI	GACNNNNGTC	1 cut(s)	1686
BstSCI	CCNGG	2 cut(s)	519, 1807
BstSFI	CTRYAG	4 cut(s)	44, 933, 1119, 1998
BstUI	CGCG	1 cut(s)	864
BstV2I	GAAGAC	5 cut(s)	149, 331, 848, 1087, 1726
BstX2I	RGATCY	2 cut(s)	193, 790
BstYI	RGATCY	2 cut(s)	193, 790
Bsu36I	CCTNAGG	2 cut(s)	618, 2064
BsuRI	GGCC	7 cut(s)	66, 426, 434, 510, 1342, 2062, 2193
BtgI	CCRYGG	3 cut(s)	1228, 1276, 1684
BtsCI	GGATG	4 cut(s)	554, 606, 1597, 1804
BtsIMutI	CAGTG	5 cut(s)	135, 414, 687, 1671, 1737
Cac8I	GCNNGC	4 cut(s)	766, 1143, 1511, 1717
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	1 cut(s)	993
CfoI	GCGC	3 cut(s)	653, 770, 869
Cfr10I	RCCGGY	1 cut(s)	1141
Cfr13I	GGNCC	6 cut(s)	65, 323, 755, 1681, 1907, 2117
Csp6I	GTAC	6 cut(s)	959, 1171, 1596, 1621, 2154, 2177
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviQI	GTAC	6 cut(s)	959, 1171, 1596, 1621, 2154, 2177
DinI	GGCGCC	1 cut(s)	769
DpnI	GATC	6 cut(s)	195, 792, 1062, 1631, 1673, 1767
DpnII	GATC	6 cut(s)	193, 790, 1060, 1629, 1671, 1765
DraI	TTTAAA	2 cut(s)	31, 595
EaeI	YGGCCR	3 cut(s)	424, 432, 508
Eam1104I	CTCTTC	3 cut(s)	167, 953, 1501
EarI	CTCTTC	3 cut(s)	167, 953, 1501
EciI	GGCGGA	1 cut(s)	197
Ecl136II	GAGCTC	2 cut(s)	400, 1018
Eco130I	CCWWGG	2 cut(s)	657, 1228
Eco147I	AGGCCT	2 cut(s)	1342, 2062
Eco24I	GRGCYC	3 cut(s)	402, 1020, 1847
Eco31I	GGTCTC	2 cut(s)	887, 1439
Eco47I	GGWCC	5 cut(s)	323, 755, 1681, 1907, 2117
Eco53kI	GAGCTC	2 cut(s)	400, 1018
Eco57I	CTGAAG	5 cut(s)	54, 648, 1631, 1884, 2134
Eco81I	CCTNAGG	2 cut(s)	618, 2064
Eco88I	CYCGRG	1 cut(s)	2243
EcoICRI	GAGCTC	2 cut(s)	400, 1018
EcoNI	CCTNNNNNAGG	1 cut(s)	1902
EcoO109I	RGGNCCY	1 cut(s)	2117
EcoRI	GAATTC	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	2 cut(s)	657, 1228
EcoT22I	ATGCAT	1 cut(s)	1515
EcoT38I	GRGCYC	3 cut(s)	402, 1020, 1847
EgeI	GGCGCC	1 cut(s)	769
EheI	GGCGCC	1 cut(s)	769
ErhI	CCWWGG	2 cut(s)	657, 1228
Esp3I	CGTCTC	1 cut(s)	1598
FaqI	GGGAC	3 cut(s)	187, 1246, 1294
FbaI	TGATCA	2 cut(s)	1060, 1629
FblI	GTMKAC	1 cut(s)	1384
FokI	GGATG	4 cut(s)	561, 613, 1604, 1791
FriOI	GRGCYC	3 cut(s)	402, 1020, 1847
FspBI	CTAG	2 cut(s)	176, 1691
GlaI	GCGC	3 cut(s)	652, 769, 868
GsaI	CCCAGC	2 cut(s)	116, 681
HaeII	RGCGCY	2 cut(s)	771, 870
HaeIII	GGCC	7 cut(s)	66, 426, 434, 510, 1342, 2062, 2193
HapII	CCGG	4 cut(s)	211, 1142, 1808, 2144
HhaI	GCGC	3 cut(s)	653, 770, 869
Hin1I	GRCGYC	1 cut(s)	768
Hin6I	GCGC	3 cut(s)	651, 768, 867
HinP1I	GCGC	3 cut(s)	651, 768, 867
HincII	GTYRAC	1 cut(s)	2136
HindII	GTYRAC	1 cut(s)	2136
HinfI	GANTC	6 cut(s)	472, 1212, 1462, 1609, 1727, 1789
HpaII	CCGG	4 cut(s)	211, 1142, 1808, 2144
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	5 cut(s)	626, 1363, 1385, 1681, 2136
Hpy188I	TCNGA	4 cut(s)	917, 1211, 1650, 2257
Hpy188III	TCNNGA	9 cut(s)	501, 617, 968, 994, 1216, 1769, 2021, 2095, 2144
Hpy8I	GTNNAC	5 cut(s)	626, 1363, 1385, 1681, 2136
HpyAV	CCTTC	9 cut(s)	78, 379, 746, 1114, 1353, 1574, 1908, 2052, 2221
HpyCH4III	ACNGT	4 cut(s)	130, 1180, 1685, 1741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 440, 659
Hsp92I	GRCGYC	1 cut(s)	768
HspAI	GCGC	3 cut(s)	651, 768, 867
KasI	GGCGCC	1 cut(s)	767
Kpn2I	TCCGGA	1 cut(s)	2143
KpnI	GGTACC	1 cut(s)	1599
KroI	GCCGGC	1 cut(s)	1141
KroNI	GCCGGC	1 cut(s)	1143
Ksp22I	TGATCA	2 cut(s)	1060, 1629
Kzo9I	GATC	6 cut(s)	193, 790, 1060, 1629, 1671, 1765
LmnI	GCTCC	3 cut(s)	1015, 1212, 1327
LweI	GCATC	2 cut(s)	1813, 2171
MaeI	CTAG	2 cut(s)	176, 1691
MaeIII	GTNAC	4 cut(s)	80, 685, 2036, 2099
MalI	GATC	6 cut(s)	195, 792, 1062, 1631, 1673, 1767
MbiI	CCGCTC	1 cut(s)	513
MboI	GATC	6 cut(s)	193, 790, 1060, 1629, 1671, 1765
MflI	RGATCY	2 cut(s)	193, 790
MhlI	GDGCHC	3 cut(s)	402, 1020, 1847
MlsI	TGGCCA	1 cut(s)	434
MluNI	TGGCCA	1 cut(s)	434
Mly113I	GGCGCC	1 cut(s)	768
MlyI	GAGTC	3 cut(s)	1206, 1471, 1603
MmeI	TCCRAC	2 cut(s)	1234, 1569
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	1515
MroI	TCCGGA	1 cut(s)	2143
MroNI	GCCGGC	1 cut(s)	1141
MroXI	GAANNNNTTC	2 cut(s)	304, 2016
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	9 cut(s)	24, 30, 410, 453, 594, 1029, 1257, 1332, 1820
MslI	CAYNNNNRTG	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	434
MspA1I	CMGCKG	4 cut(s)	449, 677, 1459, 2265
MspI	CCGG	4 cut(s)	211, 1142, 1808, 2144
MspR9I	CCNGG	2 cut(s)	521, 1809
Mva1269I	GAATGC	2 cut(s)	722, 1657
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	1 cut(s)	864
MwoI	GCNNNNNNNGC	3 cut(s)	43, 440, 659
NaeI	GCCGGC	1 cut(s)	1143
NarI	GGCGCC	1 cut(s)	768
NciI	CCSGG	1 cut(s)	1809
NcoI	CCATGG	1 cut(s)	1228
NdeII	GATC	6 cut(s)	193, 790, 1060, 1629, 1671, 1765
NgoMIV	GCCGGC	1 cut(s)	1141
NlaIV	GGNNCC	6 cut(s)	325, 769, 989, 1241, 1597, 2118
NmuCI	GTSAC	3 cut(s)	80, 685, 2099
NsiI	ATGCAT	1 cut(s)	1515
NspI	RCATGY	1 cut(s)	1513
NspV	TTCGAA	2 cut(s)	1792, 1952
PaeI	GCATGC	1 cut(s)	1513
PagI	TCATGA	1 cut(s)	993
PceI	AGGCCT	2 cut(s)	1342, 2062
PcsI	WCGNNNNNNNCGW	1 cut(s)	2241
PctI	GAATGC	2 cut(s)	722, 1657
PdiI	GCCGGC	1 cut(s)	1143
PdmI	GAANNNNTTC	2 cut(s)	304, 2016
PfeI	GAWTC	3 cut(s)	472, 1727, 1789
PflMI	CCANNNNNTGG	1 cut(s)	1588
PleI	GAGTC	3 cut(s)	1206, 1470, 1603
PluTI	GGCGCC	1 cut(s)	771
PpsI	GAGTC	3 cut(s)	1206, 1470, 1603
PpuMI	RGGWCCY	1 cut(s)	2117
PshAI	GACNNNNGTC	1 cut(s)	1686
PshBI	ATTAAT	1 cut(s)	1257
Psp124BI	GAGCTC	2 cut(s)	402, 1020
Psp5II	RGGWCCY	1 cut(s)	2117
Psp6I	CCWGG	1 cut(s)	519
PspFI	CCCAGC	2 cut(s)	112, 677
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	6 cut(s)	325, 769, 989, 1241, 1597, 2118
PspPI	GGNCC	6 cut(s)	65, 323, 755, 1681, 1907, 2117
PspPPI	RGGWCCY	1 cut(s)	2117
PstI	CTGCAG	2 cut(s)	48, 2002
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	193, 790
PvuII	CAGCTG	4 cut(s)	449, 677, 1459, 2265
RsaI	GTAC	6 cut(s)	960, 1172, 1597, 1622, 2155, 2178
RsaNI	GTAC	6 cut(s)	959, 1171, 1596, 1621, 2154, 2177
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	2 cut(s)	402, 1020
SaqAI	TTAA	9 cut(s)	24, 30, 410, 453, 594, 1029, 1257, 1332, 1820
Sau3AI	GATC	6 cut(s)	193, 790, 1060, 1629, 1671, 1765
Sau96I	GGNCC	6 cut(s)	65, 323, 755, 1681, 1907, 2117
SchI	GAGTC	3 cut(s)	1206, 1471, 1603
ScrFI	CCNGG	2 cut(s)	521, 1809
SduI	GDGCHC	3 cut(s)	402, 1020, 1847
SfaNI	GCATC	2 cut(s)	1813, 2171
SfcI	CTRYAG	4 cut(s)	44, 933, 1119, 1998
SfoI	GGCGCC	1 cut(s)	769
SfuI	TTCGAA	2 cut(s)	1792, 1952
SinI	GGWCC	5 cut(s)	323, 755, 1681, 1907, 2117
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	401, 829
SmoI	CTYRAG	2 cut(s)	401, 829
SphI	GCATGC	1 cut(s)	1513
SseBI	AGGCCT	2 cut(s)	1342, 2062
SsiI	CCGC	4 cut(s)	208, 511, 864, 2160
SspDI	GGCGCC	1 cut(s)	767
SspI	AATATT	1 cut(s)	1353
SspMI	CTAG	2 cut(s)	176, 1691
SstI	GAGCTC	2 cut(s)	402, 1020
StuI	AGGCCT	2 cut(s)	1342, 2062
StyD4I	CCNGG	2 cut(s)	519, 1807
StyI	CCWWGG	2 cut(s)	657, 1228
TaaI	ACNGT	4 cut(s)	130, 1180, 1685, 1741
TaqI	TCGA	8 cut(s)	583, 1266, 1465, 1612, 1792, 1952, 2056, 2225
TaqII	GACCGA	1 cut(s)	2155
TatI	WGTACW	3 cut(s)	1170, 1620, 2176
TauI	GCSGC	2 cut(s)	513, 867
TfiI	GAWTC	3 cut(s)	472, 1727, 1789
Tru1I	TTAA	9 cut(s)	24, 30, 410, 453, 594, 1029, 1257, 1332, 1820
Tru9I	TTAA	9 cut(s)	24, 30, 410, 453, 594, 1029, 1257, 1332, 1820
TscAI	CASTG	5 cut(s)	135, 421, 694, 1671, 1744
TseFI	GTSAC	3 cut(s)	80, 685, 2099
Tsp45I	GTSAC	3 cut(s)	80, 685, 2099
TspDTI	ATGAA	6 cut(s)	331, 695, 1010, 1096, 1350, 1915
TspGWI	ACGGA	1 cut(s)	1466
TspRI	CASTG	5 cut(s)	135, 421, 694, 1671, 1744
Van91I	CCANNNNNTGG	1 cut(s)	1588
VpaK11BI	GGWCC	5 cut(s)	323, 755, 1681, 1907, 2117
VspI	ATTAAT	1 cut(s)	1257
XagI	CCTNNNNNAGG	1 cut(s)	1902
XapI	RAATTY	2 cut(s)	702, 2251
XceI	RCATGY	1 cut(s)	1513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1589
XmiI	GTMKAC	1 cut(s)	1384
XmnI	GAANNNNTTC	2 cut(s)	304, 2016
XspI	CTAG	2 cut(s)	176, 1691
Zsp2I	ATGCAT	1 cut(s)	1515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.