Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8262837.1

Orthogroup ID

OG0005582

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 812

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8262837.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 812 bp

aagtccctccgccggactggaaagaaagctctcagcattgctcttgcaggaattactttaccatttgtattaggaattggaacatcatttgccctaaaaggaactatttctaaaggtgtagatggacccccatttcttgtcttcatgggagtggctctttctataactgccttccctgttttggctcgtattttggctgagctcaagctcttaaccactgatattggccgaatggccatgtcagcagcagctgttaatgatgtggctgcatggattcttcttgcccttgccatttccctctctggtagtggccgctctcccctggtttcactctgggttctcttgtctggatgtgcttttgttcttgtatgtatatttgctgttcgacctgtctttaaatggatggtgcagcgttgtcctgagggtgaaccagtagaagaattgtatgtatgcgctaccttggcttcagttttggcagctgggtttgtcactgaaactattggaattcatgctctatttggtgcattcgtgcttggaattattgttccaaaggaaggaccatttgcaggcgcccttgtagaaaaagttgaggatcttgtatctggtctattcctcccattatactttgtctcaagtggattgaagactgatataacaacaattcgcggcgctcagtcatggggtctcttagtcttggtcatttcaacagcctgtttcggaaaggtcattggcactatagctgtttccctcttctgcaaagtaccctttcaggaggctctagctctggggttcctcatgaatactaaagggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

270

Amino Acids

28.28

Weight (kDa)

9.1

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23700 AT4G23700
fragaria_vesca	FvH4_5g03731 FvH4_5g03731
malus_domestica	MD00G1094100.v1.1 MD06G1097000.v1.1
prunus_persica	Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1
pyrus_communis	pycom06g09310
rosa_chinensis	RchiOBHm_Chr7g0195971
rosa_laevigata	RLG00000004078
rosa_multiflora	Rmu_co8262837.1_g000001 Rmu_sc0004016.1_g000001 Rmu_ssc0000453.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259980
rosa_rugosa	Rorug07G0027700 Rorug07G0027900 Rorug07G0028000 Rorug07G0028100
rosa_samantha	Rh7AG155200 Rh7BG157100 Rh7CG160600 Rh7DG156100
rosa_wichuraiana	Rw7G013270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	569
AccBSI	CCGCTC	1 cut(s)	315
AccII	CGCG	1 cut(s)	666
AciI	CCGC	3 cut(s)	10, 313, 666
AclWI	GGATC	1 cut(s)	600
AcoI	YGGCCR	3 cut(s)	226, 234, 310
AcsI	RAATTY	1 cut(s)	504
AcuI	CTGAAG	1 cut(s)	450
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	1 cut(s)	762
AfiI	CCNNNNNNNGG	4 cut(s)	12, 181, 554, 566
AgsI	TTSAA	2 cut(s)	643, 705
AjnI	CCWGG	1 cut(s)	321
AloI	GAACNNNNNNTCC	2 cut(s)	528, 560
AluBI	AGCT	7 cut(s)	29, 202, 208, 251, 479, 740, 782
AluI	AGCT	7 cut(s)	29, 202, 208, 251, 479, 740, 782
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	634, 689
AlwI	GGATC	1 cut(s)	600
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	3 cut(s)	226, 234, 310
ApeKI	GCWGC	5 cut(s)	245, 248, 266, 409, 476
ApoI	RAATTY	1 cut(s)	504
Asp700I	GAANNNNTTC	1 cut(s)	106
AspLEI	GCGC	3 cut(s)	455, 572, 671
AspS9I	GGNCC	2 cut(s)	125, 557
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	125, 557
AxyI	CCTNAGG	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	204
BbsI	GAAGAC	2 cut(s)	133, 650
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	5 cut(s)	253, 257, 260, 421, 488
BccI	CCATC	2 cut(s)	116, 397
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	634, 689
BfaI	CTAG	1 cut(s)	779
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	2 cut(s)	573, 672
BisI	GCNGC	7 cut(s)	246, 249, 267, 313, 410, 477, 667
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	7 cut(s)	247, 250, 268, 314, 411, 478, 668
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	2 cut(s)	125, 557
BmgT120I	GGNCC	2 cut(s)	125, 557
BmiI	GGNNCC	3 cut(s)	127, 571, 791
BmrFI	CCNGG	1 cut(s)	323
BpiI	GAAGAC	2 cut(s)	133, 650
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	188, 616
BsaHI	GRCGYC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	2 cut(s)	321, 459
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 181, 554, 566
Bse1I	ACTGG	2 cut(s)	22, 431
Bse21I	CCTNAGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	321, 459
BseGI	GGATG	2 cut(s)	356, 408
BseLI	CCNNNNNNNGG	4 cut(s)	12, 181, 554, 566
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	4 cut(s)	46, 189, 411, 686
BseNI	ACTGG	2 cut(s)	22, 431
BseXI	GCAGC	5 cut(s)	253, 257, 260, 421, 488
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	3 cut(s)	228, 236, 312
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	4 cut(s)	12, 181, 554, 566
BsmAI	GTCTC	2 cut(s)	634, 689
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	3 cut(s)	228, 236, 312
Bso31I	GGTCTC	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	592
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	3 cut(s)	10, 313, 666
BspANI	GGCC	3 cut(s)	228, 236, 312
BspCNI	CTCAG	4 cut(s)	45, 190, 412, 685
BspFNI	CGCG	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	3 cut(s)	127, 571, 791
BspPI	GGATC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	689
BsrBI	CCGCTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	22, 431
BssECI	CCNNGG	2 cut(s)	321, 459
BssMI	GATC	1 cut(s)	592
BssNI	GRCGYC	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	755
BstACI	GRCGYC	1 cut(s)	570
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	5 cut(s)	32, 198, 420, 672, 688
BstF5I	GGATG	2 cut(s)	356, 408
BstFNI	CGCG	1 cut(s)	666
BstH2I	RGCGCY	2 cut(s)	573, 672
BstHHI	GCGC	3 cut(s)	455, 572, 671
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	2 cut(s)	634, 689
BstMBI	GATC	1 cut(s)	592
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 461
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	735
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	5 cut(s)	253, 257, 260, 421, 488
BstV2I	GAAGAC	2 cut(s)	133, 650
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	228, 236, 312
BtsCI	GGATG	2 cut(s)	356, 408
BtsIMutI	CAGTG	2 cut(s)	216, 489
Cac8I	GCNNGC	1 cut(s)	568
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	3 cut(s)	455, 572, 671
Cfr13I	GGNCC	2 cut(s)	125, 557
Csp6I	GTAC	1 cut(s)	761
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	6 cut(s)	145, 238, 270, 509, 678, 796
CviQI	GTAC	1 cut(s)	761
DdeI	CTNAG	5 cut(s)	32, 198, 420, 672, 688
DinI	GGCGCC	1 cut(s)	571
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
DraI	TTTAAA	1 cut(s)	397
EaeI	YGGCCR	3 cut(s)	226, 234, 310
Eam1104I	CTCTTC	1 cut(s)	755
EarI	CTCTTC	1 cut(s)	755
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	125, 557
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	450
Eco81I	CCTNAGG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	571
EheI	GGCGCC	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	6 cut(s)	148, 241, 273, 512, 681, 799
FatI	CATG	6 cut(s)	144, 237, 269, 508, 677, 795
Fnu4HI	GCNGC	7 cut(s)	246, 249, 267, 313, 410, 477, 667
FokI	GGATG	2 cut(s)	363, 415
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	7 cut(s)	246, 249, 267, 313, 410, 477, 667
FspBI	CTAG	1 cut(s)	779
GlaI	GCGC	3 cut(s)	454, 571, 670
GluI	GCNGC	7 cut(s)	246, 249, 267, 313, 410, 477, 667
GsaI	CCCAGC	1 cut(s)	483
HaeII	RGCGCY	2 cut(s)	573, 672
HaeIII	GGCC	3 cut(s)	228, 236, 312
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	3 cut(s)	455, 572, 671
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	6 cut(s)	148, 241, 273, 512, 681, 799
Hin6I	GCGC	3 cut(s)	453, 570, 669
HinP1I	GCGC	3 cut(s)	453, 570, 669
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	1 cut(s)	719
Hpy188III	TCNNGA	4 cut(s)	348, 419, 770, 796
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	2 cut(s)	181, 548
HpyCH4V	TGCA	6 cut(s)	47, 269, 409, 524, 566, 756
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 461
HpyF3I	CTNAG	5 cut(s)	32, 198, 420, 672, 688
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	6 cut(s)	148, 241, 273, 512, 681, 799
HspAI	GCGC	3 cut(s)	453, 570, 669
KasI	GGCGCC	1 cut(s)	569
Kzo9I	GATC	1 cut(s)	592
Lsp1109I	GCAGC	5 cut(s)	253, 257, 260, 421, 488
MaeI	CTAG	1 cut(s)	779
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	1 cut(s)	594
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	1 cut(s)	592
MboII	GAAGA	5 cut(s)	133, 269, 449, 655, 742
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	6 cut(s)	51, 75, 440, 504, 537, 660
MluNI	TGGCCA	1 cut(s)	236
Mly113I	GGCGCC	1 cut(s)	570
MnlI	CCTC	8 cut(s)	17, 308, 415, 583, 623, 758, 766, 803
Mox20I	TGGCCA	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	3 cut(s)	212, 255, 396
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	251, 479
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	2 cut(s)	242, 461
NarI	GGCGCC	1 cut(s)	570
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	6 cut(s)	148, 241, 273, 512, 681, 799
NlaIV	GGNNCC	3 cut(s)	127, 571, 791
NmuCI	GTSAC	1 cut(s)	487
PagI	TCATGA	1 cut(s)	795
PctI	GAATGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	7 cut(s)	247, 250, 268, 314, 411, 478, 668
PluTI	GGCGCC	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	127, 571, 791
PspPI	GGNCC	2 cut(s)	125, 557
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	2 cut(s)	251, 479
RsaI	GTAC	1 cut(s)	762
RsaNI	GTAC	1 cut(s)	761
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	212, 255, 396
SatI	GCNGC	7 cut(s)	246, 249, 267, 313, 410, 477, 667
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	2 cut(s)	125, 557
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	735
SfoI	GGCGCC	1 cut(s)	571
SinI	GGWCC	2 cut(s)	125, 557
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	203, 631
SmoI	CTYRAG	2 cut(s)	203, 631
Sse9I	AATT	6 cut(s)	51, 75, 440, 504, 537, 660
SsiI	CCGC	3 cut(s)	10, 313, 666
SspDI	GGCGCC	1 cut(s)	569
SspMI	CTAG	1 cut(s)	779
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	459
TaqI	TCGA	1 cut(s)	385
TasI	AATT	6 cut(s)	51, 75, 440, 504, 537, 660
TauI	GCSGC	2 cut(s)	315, 669
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	3 cut(s)	212, 255, 396
Tru9I	TTAA	3 cut(s)	212, 255, 396
TscAI	CASTG	2 cut(s)	223, 496
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	5 cut(s)	245, 248, 266, 409, 476
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	3 cut(s)	133, 497, 812
TspRI	CASTG	2 cut(s)	223, 496
VpaK11BI	GGWCC	2 cut(s)	125, 557
XapI	RAATTY	1 cut(s)	504
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.