Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005582

Physical Location & Seq

Genomic Coordinates Reverse (-)

1967334 .. 1970787

Gene Structure 3454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0028000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGTTTCCGACTCGATCACCAACGTTTCCATTCCTTCGGCCCCAAAAAGCGCCAGGGATTTGGGCAAGAAGAAGAGGGCCAGGTCGGCGAAATTGAAGCAGTGCAAGCTGGACGTTCGCCGCGAGCAATGGCTTTCTTCAGGTGCGGTGGTGAAGAAGGAGTGCAAGGAGGAACAGAACGGCGGTGTTCAAGGTCGGAGAGAGCGGAATAGCCCTAGGGAAATGGGGCCTAGAGAAGGAGAGAACGTCGGATCGATCCACCATGACAGCGATTTGGACTCGAACAGTCCGTCCAGCTTCACGAGTAGTGTGTTGGGCGGCCACGATTCGGAGACTTTCACCGGCTCCAGCAGCAGTAGCAGCAGCGGTGACTGTTGCTCCGGTAATATCACCGAGGAGGATGAGGATGATGGCTGCCTGGATGATTGGGAGGCTGTGGCGGACGCCTTGGCGGCGGATGAGAAGCCGAAGAACCAGAATCCAGAGCCGCAAAGGGAGCATGAAGCGATTGCGAAATCGGTTCCCGCTAGTCAGATTGAGAATTCGAAACCCCAGTGTGCTAGAGCTATGCCGAAAGCGTGGAGGCCTGATGATGCTTTTCGTCCCCAGAGTCTGCCCAATTTGGCTAAGCAGCTCAGCTTGCCGAATTCCAGCGGGAAAAGATTCGGTGGTGGTGGTGTTGCGTGGGGCTGTAACAGTGTGGTATCTCCGCCATCTTCGTGTCCTATATGCTACGAGGATTTGGACTTGACAGACACCAGCTTCTTGCCGTGCTTGTGTGGATTCAGGCTCTGCCTTTTCTGTCACAAGAGGATTCTTGAGGGGGATGGTCGCTGTCCCGGCTGCAGGAAGCCCTATGAGAGTGAGCCTGTTGAGGCAGAGACAAGTGTCCATGGAGGTAGTCTTACATTCAGGTTGCCTCGTTCGTGTAGCATGATCACAAGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

316

Amino Acids

34.16

Weight (kDa)

5.95

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	241 - 287	2.9e-18	RING/Ubox like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23700 AT4G23700
fragaria_vesca	FvH4_5g03731 FvH4_5g03731
malus_domestica	MD00G1094100.v1.1 MD06G1097000.v1.1
prunus_persica	Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1 Prupe.5G111700_v2.0.a1
pyrus_communis	pycom06g09310
rosa_chinensis	RchiOBHm_Chr7g0195971
rosa_laevigata	RLG00000004078
rosa_multiflora	Rmu_co8262837.1_g000001 Rmu_sc0004016.1_g000001 Rmu_ssc0000453.1_g000003
rosa_roxburghii	Rroxscaffold_3G00259980
rosa_rugosa	Rorug07G0027700 Rorug07G0027900 Rorug07G0028000 Rorug07G0028100
rosa_samantha	Rh7AG155200 Rh7BG157100 Rh7CG160600 Rh7DG156100
rosa_wichuraiana	Rw7G013270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	123
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	2 cut(s)	250, 259
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	541, 646
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	444
AfiI	CCNNNNNNNGG	3 cut(s)	236, 328, 846
AgsI	TTSAA	2 cut(s)	97, 191
AjnI	CCWGG	3 cut(s)	53, 80, 417
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	6 cut(s)	109, 297, 566, 634, 639, 762
AluI	AGCT	6 cut(s)	109, 297, 566, 634, 639, 762
Alw26I	GTCTC	2 cut(s)	326, 875
AlwI	GGATC	2 cut(s)	250, 259
AlwNI	CAGNNNCTG	2 cut(s)	613, 792
AoxI	GGCC	5 cut(s)	39, 78, 227, 319, 584
ApeKI	GCWGC	6 cut(s)	351, 360, 363, 414, 631, 843
ApoI	RAATTY	2 cut(s)	541, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
Asp700I	GAANNNNTTC	1 cut(s)	662
AspA2I	CCTAGG	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	40, 78, 227
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	5 cut(s)	10, 163, 331, 380, 382
AsuII	TTCGAA	1 cut(s)	545
AvrII	CCTAGG	1 cut(s)	215
BauI	CACGAG	1 cut(s)	301
BbvI	GCAGC	6 cut(s)	363, 372, 375, 401, 643, 830
BccI	CCATC	3 cut(s)	404, 721, 821
BceAI	ACGGC	2 cut(s)	196, 754
BciT130I	CCWGG	3 cut(s)	55, 82, 419
BclI	TGATCA	1 cut(s)	936
BcnI	CCSGG	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	326, 875
BfaI	CTAG	4 cut(s)	216, 231, 528, 561
BfmI	CTRYAG	1 cut(s)	844
BfoI	RGCGCY	1 cut(s)	54
BglI	GCCNNNNNGGC	2 cut(s)	86, 452
BlnI	CCTAGG	1 cut(s)	215
BlpI	GCTNAGC	2 cut(s)	627, 635
Bme1390I	CCNGG	4 cut(s)	55, 82, 419, 840
BmgT120I	GGNCC	3 cut(s)	40, 78, 227
BmiI	GGNNCC	4 cut(s)	42, 228, 346, 522
BmrFI	CCNGG	4 cut(s)	55, 82, 419, 840
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	1 cut(s)	583
BmuI	ACTGGG	1 cut(s)	547
BoxI	GACNNNNGTC	1 cut(s)	887
BpmI	CTGGAG	1 cut(s)	331
Bpu1102I	GCTNAGC	2 cut(s)	627, 635
Bpu14I	TTCGAA	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	839
BpuMI	CCSGG	1 cut(s)	840
Bsa29I	ATCGAT	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	5 cut(s)	54, 215, 393, 447, 892
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	4 cut(s)	231, 261, 362, 392
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 328, 846
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	3 cut(s)	55, 82, 419
BseCI	ATCGAT	1 cut(s)	254
BseDI	CCNNGG	5 cut(s)	54, 215, 393, 447, 892
BseGI	GGATG	5 cut(s)	406, 412, 427, 463, 832
BseLI	CCNNNNNNNGG	3 cut(s)	236, 328, 846
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	6 cut(s)	363, 372, 375, 401, 643, 830
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	5 cut(s)	41, 80, 229, 321, 586
BshVI	ATCGAT	1 cut(s)	254
BsiSI	CCGG	3 cut(s)	342, 381, 840
BslFI	GGGAC	2 cut(s)	588, 822
BslI	CCNNNNNNNGG	3 cut(s)	236, 328, 846
BsmAI	GTCTC	2 cut(s)	326, 875
BsmFI	GGGAC	2 cut(s)	588, 822
BsnI	GGCC	5 cut(s)	41, 80, 229, 321, 586
Bsp119I	TTCGAA	1 cut(s)	545
Bsp143I	GATC	4 cut(s)	15, 251, 255, 936
Bsp1720I	GCTNAGC	2 cut(s)	627, 635
Bsp19I	CCATGG	1 cut(s)	892
BspANI	GGCC	5 cut(s)	41, 80, 229, 321, 586
BspCNI	CTCAG	1 cut(s)	648
BspDI	ATCGAT	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	42, 228, 346, 522
BspMAI	CTGCAG	1 cut(s)	848
BspPI	GGATC	2 cut(s)	250, 259
BspT104I	TTCGAA	1 cut(s)	545
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	5 cut(s)	54, 215, 393, 447, 892
BssMI	GATC	4 cut(s)	15, 251, 255, 936
BssNI	GRCGYC	1 cut(s)	444
BssSI	CACGAG	1 cut(s)	301
BssT1I	CCWWGG	3 cut(s)	215, 447, 892
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	3 cut(s)	55, 82, 419
Bst4CI	ACNGT	3 cut(s)	287, 374, 698
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	444
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	107, 125, 641
BstDEI	CTNAG	2 cut(s)	627, 635
BstDSI	CCRYGG	1 cut(s)	892
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	5 cut(s)	406, 412, 427, 463, 832
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	4 cut(s)	18, 254, 258, 939
BstMAI	GTCTC	2 cut(s)	326, 875
BstMBI	GATC	4 cut(s)	15, 251, 255, 936
BstMWI	GCNNNNNNNGC	9 cut(s)	86, 106, 351, 357, 360, 452, 496, 640, 840
BstNI	CCWGG	3 cut(s)	55, 82, 419
BstPAI	GACNNNNGTC	1 cut(s)	887
BstSCI	CCNGG	4 cut(s)	53, 80, 417, 838
BstSFI	CTRYAG	1 cut(s)	844
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	6 cut(s)	363, 372, 375, 401, 643, 830
BstXI	CCANNNNNNTGG	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	254
BsuRI	GGCC	5 cut(s)	41, 80, 229, 321, 586
BsuTUI	ATCGAT	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	892
BtsCI	GGATG	5 cut(s)	406, 412, 427, 463, 832
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	3 cut(s)	107, 560, 703
Cac8I	GCNNGC	3 cut(s)	107, 125, 641
CaiI	CAGNNNCTG	2 cut(s)	613, 792
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	40, 78, 227
ClaI	ATCGAT	1 cut(s)	254
CseI	GACGC	1 cut(s)	452
CviAII	CATG	4 cut(s)	263, 500, 893, 934
DdeI	CTNAG	2 cut(s)	627, 635
DpnI	GATC	4 cut(s)	17, 253, 257, 938
DpnII	GATC	4 cut(s)	15, 251, 255, 936
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	3 cut(s)	455, 470, 699
Eco130I	CCWWGG	3 cut(s)	215, 447, 892
Eco147I	AGGCCT	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	123
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	2 cut(s)	541, 646
EcoRII	CCWGG	3 cut(s)	53, 80, 417
EcoT14I	CCWWGG	3 cut(s)	215, 447, 892
ErhI	CCWWGG	3 cut(s)	215, 447, 892
FaeI	CATG	4 cut(s)	266, 503, 896, 937
FaiI	YATR	8 cut(s)	264, 501, 569, 728, 730, 858, 894, 935
FaqI	GGGAC	2 cut(s)	588, 822
FatI	CATG	4 cut(s)	262, 499, 892, 933
FauI	CCCGC	2 cut(s)	532, 647
FbaI	TGATCA	1 cut(s)	936
FokI	GGATG	5 cut(s)	413, 419, 434, 470, 839
FspBI	CTAG	4 cut(s)	216, 231, 528, 561
GlaI	GCGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	5 cut(s)	41, 80, 229, 321, 586
HapII	CCGG	3 cut(s)	342, 381, 840
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	266, 503, 896, 937
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	8 cut(s)	11, 278, 326, 478, 610, 663, 783, 814
HpaII	CCGG	3 cut(s)	342, 381, 840
HphI	GGTGA	5 cut(s)	10, 163, 331, 380, 382
Hpy188I	TCNGA	5 cut(s)	10, 198, 251, 331, 534
Hpy188III	TCNNGA	3 cut(s)	301, 482, 818
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	45, 151, 230
HpyCH4III	ACNGT	3 cut(s)	287, 374, 698
HpyCH4IV	ACGT	3 cut(s)	24, 114, 246
HpyCH4V	TGCA	3 cut(s)	105, 165, 846
HpyF10VI	GCNNNNNNNGC	9 cut(s)	86, 106, 351, 357, 360, 452, 496, 640, 840
HpyF3I	CTNAG	2 cut(s)	627, 635
HpySE526I	ACGT	3 cut(s)	24, 114, 246
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	266, 503, 896, 937
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	936
Kzo9I	GATC	4 cut(s)	15, 251, 255, 936
LmnI	GCTCC	3 cut(s)	350, 383, 496
Lsp1109I	GCAGC	6 cut(s)	363, 372, 375, 401, 643, 830
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	4 cut(s)	216, 231, 528, 561
MaeII	ACGT	3 cut(s)	24, 114, 246
MaeIII	GTNAC	3 cut(s)	368, 692, 803
MalI	GATC	4 cut(s)	17, 253, 257, 938
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	4 cut(s)	15, 251, 255, 936
MboII	GAAGA	6 cut(s)	82, 85, 129, 166, 481, 708
MluCI	AATT	4 cut(s)	92, 541, 619, 646
MlyI	GAGTC	3 cut(s)	5, 272, 619
MmeI	TCCRAC	3 cut(s)	33, 176, 229
MroXI	GAANNNNTTC	1 cut(s)	662
MseI	TTAA	1 cut(s)	949
MslI	CAYNNNNRTG	1 cut(s)	718
MspA1I	CMGCKG	2 cut(s)	366, 654
MspI	CCGG	3 cut(s)	342, 381, 840
MspR9I	CCNGG	4 cut(s)	55, 82, 419, 840
MvaI	CCWGG	3 cut(s)	55, 82, 419
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	9 cut(s)	86, 106, 351, 357, 360, 452, 496, 640, 840
NciI	CCSGG	1 cut(s)	840
NcoI	CCATGG	1 cut(s)	892
NdeII	GATC	4 cut(s)	15, 251, 255, 936
NlaIII	CATG	4 cut(s)	266, 503, 896, 937
NlaIV	GGNNCC	4 cut(s)	42, 228, 346, 522
NmuCI	GTSAC	2 cut(s)	368, 803
NspV	TTCGAA	1 cut(s)	545
PceI	AGGCCT	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 287
PdmI	GAANNNNTTC	1 cut(s)	662
PfeI	GAWTC	5 cut(s)	326, 478, 663, 783, 814
PleI	GAGTC	3 cut(s)	5, 272, 618
PpsI	GAGTC	3 cut(s)	5, 272, 618
PshAI	GACNNNNGTC	1 cut(s)	887
Psp1406I	AACGTT	1 cut(s)	24
Psp6I	CCWGG	3 cut(s)	53, 80, 417
PspGI	CCWGG	3 cut(s)	53, 80, 417
PspN4I	GGNNCC	4 cut(s)	42, 228, 346, 522
PspPI	GGNCC	3 cut(s)	40, 78, 227
PstI	CTGCAG	1 cut(s)	848
PstNI	CAGNNNCTG	2 cut(s)	613, 792
RseI	CAYNNNNRTG	1 cut(s)	718
SaqAI	TTAA	1 cut(s)	949
Sau3AI	GATC	4 cut(s)	15, 251, 255, 936
Sau96I	GGNCC	3 cut(s)	40, 78, 227
SchI	GAGTC	3 cut(s)	5, 272, 619
ScrFI	CCNGG	4 cut(s)	55, 82, 419, 840
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	844
SfuI	TTCGAA	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	718
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	4 cut(s)	92, 541, 619, 646
SseBI	AGGCCT	1 cut(s)	586
SspMI	CTAG	4 cut(s)	216, 231, 528, 561
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	4 cut(s)	53, 80, 417, 838
StyI	CCWWGG	3 cut(s)	215, 447, 892
TaaI	ACNGT	3 cut(s)	287, 374, 698
TaiI	ACGT	3 cut(s)	27, 117, 249
TaqI	TCGA	4 cut(s)	14, 254, 281, 545
TasI	AATT	4 cut(s)	92, 541, 619, 646
TauI	GCSGC	4 cut(s)	123, 321, 455, 490
TfiI	GAWTC	5 cut(s)	326, 478, 663, 783, 814
Tru1I	TTAA	1 cut(s)	949
Tru9I	TTAA	1 cut(s)	949
TscAI	CASTG	3 cut(s)	107, 560, 703
TseFI	GTSAC	2 cut(s)	368, 803
TseI	GCWGC	6 cut(s)	351, 360, 363, 414, 631, 843
Tsp45I	GTSAC	2 cut(s)	368, 803
TspDTI	ATGAA	1 cut(s)	516
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	3 cut(s)	107, 560, 703
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	2 cut(s)	541, 646
XmaJI	CCTAGG	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	662
XspI	CTAG	4 cut(s)	216, 231, 528, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.