pycom06g10550

importin subunit beta-1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
15857655 .. 15859208
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10550.1

Sequence Viewer

Length: 1554 bp
ATGCTTACTGCTGTAGTTCAGGGCATGAACTCTACCGAGACTAACAATGATGTCAGGCTTGCTGCCACTAGAGCTTTGCATAATGCTTTGGGTTTTGCTCAGGCAAATTTCTCCAATGATATGGAGCGTGACTACATAGTGAGAGTTGTATGTGAGGCTACTCTTTCCCCTGAAGTGAAGATTCGACAGGCAGCCTTCGAGTGCTTGGTTTCTATATCTTCAACCTATTATGAGAAGTTGGCTCCGTACATCCAAGATATATTTAGCATCACTGCTAAGGCTGTGAAGGAAGATGAGGAACCTGTTGCACTTCAAGCCATTGAGTTTTGGAGTTCAATCTGCGATGAGGAGATTGACATATTAGAAGAATATGGGGGTGAATTTACTGGGGATTCTTCTATTCCGTGCTTTTACTTTATCAAGCAAGCACTTCCTGCCCTAATTCCTTTATTATTGGAGACTCTTCTTAAGCAAGAAGAGGATCAGGATCAGGATGAAGTGGCCTGGAATGTTGCTATGGCTGGTGGAACTTGCTTGGGCTTGGTAGCACGGACAGTTGGAGATGATGTTGTTCCACTTGTAATGCCATTTATTGAGGAGAATATTACAAAGCCAGATTGGAGGCAGAGGGAGGCAGCCACTTACGCATTTGGTTCTATTTTGGAAGGTCCATCCCCTGACAAGCTCATGCCTCTAGTCAATGTTGCTCTGAATTTCATGCTAAATGCTTTGACAAATGATCGAAATAACCATGTGAAGGACACTACTGGTTGGACTCTTGGAAGAATTTTTGAATTTCTTCATGGGTCAACTTTGGAGACACCCATAATAACCCAAGCAAATTGCCAACAGATTATCACAGTTCTTCTTCAGAGCATGAAAGATGTTCCAACTGTGGCTGAGAAAGCTTGTGGTGCACTCTATTTTCTGGCCCAGGGTTTTGAGGATGCAGAACCTTCCTCCTCCCCTCTGACTCCTTTTTTCCAGGAGATTGCCCAGGCCCTTCTAGATGTTACTCACCGAGAAGATGCTGGAGAATCCCGCTTGCGAACTGCAGCTTATGAGGCTCTGAATGAAGTTGTAAGATGTTCCACTGACGAGACTGCTCCATTGGTGATGCAATTAGTTCCTGTCATAATGTTGGAACTCCACCAGACTCTTGAGGCGCAAAAGCTTTCAGCTGATGAGAGGGAGAAGCAGAATGAATTACAAGGCCTTCTTTGCGGTTGCTTGCAGGTCATCATACAGAAGCTTGGGTCATCTGAACCGACAAAATATGTCTTCATGCAGTATGCTGACCAGTTGATGGGTCTGTTCTTGAGAGTATTTGCCAGTAAAAGTGCCACAGCTCATGAGGAGGCCATGCTTGCCATTGGAGCTCTTGTCTACTCAACAGGCTCTGATTTTGCCAAGTACATGACCGAGTTTTATAAATATTTGGAAATGGGTCTCCAGAATTTTGAGGACTATCAGGTTTGCGCCATCACCGTTGGTGTGGTGGGGATGTATGCAGGGCTTTGGAGGATAAAGTATTACCTTATTGTGATGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

57.51

Weight (kDa)

4.47

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_EZ PF13513 207 - 263 7.8e-12 HEAT-like repeat
TPR_IMB1 PF25574 285 - 501 4e-51 Importin subunit beta-1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1431
Acc36I ACCTGC 1 cut(s) 1225
AccB7I CCANNNNNTGG 1 cut(s) 1306
AccI GTMKAC 1 cut(s) 1386
AciI CCGC 2 cut(s) 1042, 1224
AclWI GGATC 2 cut(s) 489, 495
AcsI RAATTY 6 cut(s) 106, 380, 712, 786, 794, 1456
AcuI CTGAAG 2 cut(s) 192, 854
AfaI GTAC 2 cut(s) 248, 1415
AfiI CCNNNNNNNGG 2 cut(s) 757, 1306
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 4 cut(s) 222, 314, 336, 794
AjnI CCWGG 4 cut(s) 503, 933, 984, 996
AluBI AGCT 9 cut(s) 74, 685, 908, 1058, 1174, 1181, 1252, 1349, 1379
AluI AGCT 9 cut(s) 74, 685, 908, 1058, 1174, 1181, 1252, 1349, 1379
Alw21I GWGCWC 2 cut(s) 919, 1381
Alw26I GTCTC 5 cut(s) 32, 452, 812, 1094, 1454
Alw44I GTGCAC 1 cut(s) 915
AlwI GGATC 2 cut(s) 489, 495
AlwNI CAGNNNCTG 1 cut(s) 1400
AoxI GGCC 5 cut(s) 501, 930, 999, 1213, 1359
ApaLI GTGCAC 1 cut(s) 915
ApeKI GCWGC 4 cut(s) 62, 191, 635, 1055
ApoI RAATTY 6 cut(s) 106, 380, 712, 786, 794, 1456
Asp700I GAANNNNTTC 1 cut(s) 798
AspLEI GCGC 2 cut(s) 1168, 1481
AspS9I GGNCC 3 cut(s) 668, 931, 1000
AsuHPI GGTGA 4 cut(s) 389, 1010, 1126, 1477
AvaII GGWCC 1 cut(s) 668
BaeGI GKGCMC 1 cut(s) 919
BanII GRGCYC 1 cut(s) 1381
BbsI GAAGAC 1 cut(s) 1273
Bbv12I GWGCWC 2 cut(s) 919, 1381
BbvI GCAGC 4 cut(s) 49, 203, 647, 1067
BccI CCATC 4 cut(s) 679, 1300, 1490, 1540
BciT130I CCWGG 4 cut(s) 505, 935, 986, 998
BcoDI GTCTC 5 cut(s) 32, 452, 812, 1094, 1454
BfaI CTAG 3 cut(s) 69, 695, 1007
BfmI CTRYAG 2 cut(s) 12, 1053
BfrI CTTAAG 1 cut(s) 467
BfuAI ACCTGC 1 cut(s) 1225
BisI GCNGC 4 cut(s) 63, 192, 636, 1056
BlsI GCNGC 4 cut(s) 64, 193, 637, 1057
Bme1390I CCNGG 4 cut(s) 505, 935, 986, 998
Bme18I GGWCC 1 cut(s) 668
BmgT120I GGNCC 3 cut(s) 668, 931, 1000
BmiI GGNNCC 2 cut(s) 243, 300
BmrFI CCNGG 4 cut(s) 505, 935, 986, 998
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 4 cut(s) 276, 937, 1018, 1107
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 1273
BpmI CTGGAG 2 cut(s) 1053, 1436
Bpu10I CCTNAGC 2 cut(s) 99, 276
BpuEI CTTGAG 2 cut(s) 1181, 1339
BsaBI GATNNNNATC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 1454
BsaJI CCNNGG 3 cut(s) 933, 934, 996
BsaXI ACNNNNNCTCC 4 cut(s) 552, 582, 1368, 1398
Bsc4I CCNNNNNNNGG 2 cut(s) 757, 1306
Bse1I ACTGG 4 cut(s) 391, 772, 1300, 1332
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 4 cut(s) 505, 935, 986, 998
BseDI CCNNGG 3 cut(s) 933, 934, 996
BseGI GGATG 5 cut(s) 249, 499, 671, 952, 1509
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 757, 1306
BseMII CTCAG 2 cut(s) 113, 891
BseNI ACTGG 4 cut(s) 391, 772, 1300, 1332
BseRI GAGGAG 4 cut(s) 362, 611, 952, 1370
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 4 cut(s) 49, 203, 647, 1067
BshFI GGCC 5 cut(s) 503, 932, 1001, 1215, 1361
BsiHKAI GWGCWC 2 cut(s) 919, 1381
BslI CCNNNNNNNGG 2 cut(s) 757, 1306
BsmAI GTCTC 5 cut(s) 32, 452, 812, 1094, 1454
BsnI GGCC 5 cut(s) 503, 932, 1001, 1215, 1361
Bso31I GGTCTC 1 cut(s) 1454
Bsp1286I GDGCHC 2 cut(s) 919, 1381
Bsp143I GATC 3 cut(s) 481, 487, 739
BspACI CCGC 2 cut(s) 1042, 1224
BspANI GGCC 5 cut(s) 503, 932, 1001, 1215, 1361
BspCNI CTCAG 2 cut(s) 112, 892
BspHI TCATGA 1 cut(s) 1351
BspLI GGNNCC 2 cut(s) 243, 300
BspMAI CTGCAG 1 cut(s) 1057
BspMI ACCTGC 1 cut(s) 1225
BspPI GGATC 2 cut(s) 489, 495
BspTI CTTAAG 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 1454
BsrI ACTGG 4 cut(s) 391, 772, 1300, 1332
BssECI CCNNGG 3 cut(s) 933, 934, 996
BssMI GATC 3 cut(s) 481, 487, 739
Bst2UI CCWGG 4 cut(s) 505, 935, 986, 998
Bst4CI ACNGT 4 cut(s) 556, 862, 895, 1489
Bst6I CTCTTC 2 cut(s) 468, 471
BstAFI CTTAAG 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 5 cut(s) 60, 426, 1046, 1232, 1368
BstDEI CTNAG 3 cut(s) 99, 276, 900
BstF5I GGATG 5 cut(s) 249, 499, 671, 952, 1509
BstHHI GCGC 2 cut(s) 1168, 1481
BstKTI GATC 3 cut(s) 484, 490, 742
BstMAI GTCTC 5 cut(s) 32, 452, 812, 1094, 1454
BstMBI GATC 3 cut(s) 481, 487, 739
BstNI CCWGG 4 cut(s) 505, 935, 986, 998
BstSCI CCNGG 4 cut(s) 503, 933, 984, 996
BstSFI CTRYAG 2 cut(s) 12, 1053
BstSLI GKGCMC 1 cut(s) 919
BstV1I GCAGC 4 cut(s) 49, 203, 647, 1067
BstV2I GAAGAC 1 cut(s) 1273
BstXI CCANNNNNNTGG 1 cut(s) 121
BsuRI GGCC 5 cut(s) 503, 932, 1001, 1215, 1361
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 5 cut(s) 249, 499, 671, 952, 1509
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 1092
BveI ACCTGC 1 cut(s) 1225
Cac8I GCNNGC 5 cut(s) 60, 426, 1046, 1232, 1368
CaiI CAGNNNCTG 1 cut(s) 1400
CciI TCATGA 1 cut(s) 1351
CfoI GCGC 2 cut(s) 1168, 1481
Cfr13I GGNCC 3 cut(s) 668, 931, 1000
Csp6I GTAC 2 cut(s) 247, 1414
CviQI GTAC 2 cut(s) 247, 1414
DdeI CTNAG 3 cut(s) 99, 276, 900
DpnI GATC 3 cut(s) 483, 489, 741
DpnII GATC 3 cut(s) 481, 487, 739
Eam1104I CTCTTC 2 cut(s) 468, 471
EarI CTCTTC 2 cut(s) 468, 471
Ecl136II GAGCTC 1 cut(s) 1379
Eco147I AGGCCT 1 cut(s) 1215
Eco24I GRGCYC 1 cut(s) 1381
Eco31I GGTCTC 1 cut(s) 1454
Eco47I GGWCC 1 cut(s) 668
Eco53kI GAGCTC 1 cut(s) 1379
Eco57I CTGAAG 2 cut(s) 192, 854
EcoICRI GAGCTC 1 cut(s) 1379
EcoO109I RGGNCCY 1 cut(s) 1000
EcoRII CCWGG 4 cut(s) 503, 933, 984, 996
EcoT38I GRGCYC 1 cut(s) 1381
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FauI CCCGC 1 cut(s) 1049
FblI GTMKAC 1 cut(s) 1386
Fnu4HI GCNGC 4 cut(s) 63, 192, 636, 1056
FokI GGATG 5 cut(s) 236, 506, 658, 959, 1516
FriOI GRGCYC 1 cut(s) 1381
Fsp4HI GCNGC 4 cut(s) 63, 192, 636, 1056
FspBI CTAG 3 cut(s) 69, 695, 1007
GlaI GCGC 2 cut(s) 1167, 1480
GluI GCNGC 4 cut(s) 63, 192, 636, 1056
GsuI CTGGAG 2 cut(s) 1053, 1436
HaeIII GGCC 5 cut(s) 503, 932, 1001, 1215, 1361
HhaI GCGC 2 cut(s) 1168, 1481
Hin6I GCGC 2 cut(s) 1166, 1479
HinP1I GCGC 2 cut(s) 1166, 1479
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HindIII AAGCTT 3 cut(s) 906, 1172, 1250
HinfI GANTC 7 cut(s) 181, 392, 460, 775, 973, 1037, 1156
HphI GGTGA 4 cut(s) 389, 1010, 1126, 1477
Hpy166II GTNNAC 3 cut(s) 810, 917, 1387
Hpy188I TCNGA 6 cut(s) 711, 873, 972, 1071, 1264, 1402
Hpy188III TCNNGA 7 cut(s) 485, 491, 1007, 1160, 1318, 1352, 1453
Hpy8I GTNNAC 3 cut(s) 810, 917, 1387
HpyAV CCTTC 7 cut(s) 205, 280, 659, 751, 966, 1013, 1226
HpyCH4III ACNGT 4 cut(s) 556, 862, 895, 1489
HpyCH4V TGCA 9 cut(s) 79, 308, 917, 950, 1055, 1120, 1234, 1288, 1511
HpyF3I CTNAG 3 cut(s) 99, 276, 900
HspAI GCGC 2 cut(s) 1166, 1479
Kzo9I GATC 3 cut(s) 481, 487, 739
LmnI GCTCC 4 cut(s) 124, 247, 1111, 1376
Lsp1109I GCAGC 4 cut(s) 49, 203, 647, 1067
LweI GCATC 4 cut(s) 276, 937, 1018, 1107
MaeI CTAG 3 cut(s) 69, 695, 1007
MaeIII GTNAC 2 cut(s) 128, 1012
MalI GATC 3 cut(s) 483, 489, 741
MboI GATC 3 cut(s) 481, 487, 739
MhlI GDGCHC 2 cut(s) 919, 1381
MlyI GAGTC 4 cut(s) 454, 769, 967, 1150
MmeI TCCRAC 4 cut(s) 538, 752, 914, 1122
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 1181
MspCI CTTAAG 1 cut(s) 467
MspR9I CCNGG 4 cut(s) 505, 935, 986, 998
MvaI CCWGG 4 cut(s) 505, 935, 986, 998
NdeII GATC 3 cut(s) 481, 487, 739
NlaIV GGNNCC 2 cut(s) 243, 300
NmuCI GTSAC 1 cut(s) 128
PagI TCATGA 1 cut(s) 1351
PasI CCCWGGG 1 cut(s) 934
PceI AGGCCT 1 cut(s) 1215
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 3 cut(s) 181, 392, 1037
PflMI CCANNNNNTGG 1 cut(s) 1306
PfoI TCCNGGA 1 cut(s) 984
PkrI GCNGC 4 cut(s) 64, 193, 637, 1057
PleI GAGTC 4 cut(s) 454, 769, 967, 1150
PpsI GAGTC 4 cut(s) 454, 769, 967, 1150
PsiI TTATAA 1 cut(s) 1431
Psp124BI GAGCTC 1 cut(s) 1381
Psp6I CCWGG 4 cut(s) 503, 933, 984, 996
PspGI CCWGG 4 cut(s) 503, 933, 984, 996
PspN4I GGNNCC 2 cut(s) 243, 300
PspPI GGNCC 3 cut(s) 668, 931, 1000
PstI CTGCAG 1 cut(s) 1057
PstNI CAGNNNCTG 1 cut(s) 1400
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 2 cut(s) 248, 1415
RsaNI GTAC 2 cut(s) 247, 1414
SacI GAGCTC 1 cut(s) 1381
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 4 cut(s) 63, 192, 636, 1056
Sau3AI GATC 3 cut(s) 481, 487, 739
Sau96I GGNCC 3 cut(s) 668, 931, 1000
SchI GAGTC 4 cut(s) 454, 769, 967, 1150
ScrFI CCNGG 4 cut(s) 505, 935, 986, 998
SduI GDGCHC 2 cut(s) 919, 1381
SfaNI GCATC 4 cut(s) 276, 937, 1018, 1107
SfcI CTRYAG 2 cut(s) 12, 1053
SinI GGWCC 1 cut(s) 668
SmlI CTYRAG 3 cut(s) 467, 1160, 1318
SmoI CTYRAG 3 cut(s) 467, 1160, 1318
SseBI AGGCCT 1 cut(s) 1215
SsiI CCGC 2 cut(s) 1042, 1224
SspI AATATT 2 cut(s) 604, 1436
SspMI CTAG 3 cut(s) 69, 695, 1007
SstI GAGCTC 1 cut(s) 1381
StuI AGGCCT 1 cut(s) 1215
StyD4I CCNGG 4 cut(s) 503, 933, 984, 996
TaaI ACNGT 4 cut(s) 556, 862, 895, 1489
TaqI TCGA 3 cut(s) 184, 198, 742
TaqII GACCGA 1 cut(s) 1436
TatI WGTACW 1 cut(s) 1413
TfiI GAWTC 3 cut(s) 181, 392, 1037
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 2 cut(s) 277, 1099
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 4 cut(s) 62, 191, 635, 1055
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 8 cut(s) 41, 510, 706, 791, 893, 1089, 1218, 1273
TspGWI ACGGA 3 cut(s) 234, 393, 565
TspRI CASTG 2 cut(s) 277, 1099
Van91I CCANNNNNTGG 1 cut(s) 1306
Vha464I CTTAAG 1 cut(s) 467
VneI GTGCAC 1 cut(s) 915
VpaK11BI GGWCC 1 cut(s) 668
XapI RAATTY 6 cut(s) 106, 380, 712, 786, 794, 1456
XbaI TCTAGA 1 cut(s) 1006
XmiI GTMKAC 1 cut(s) 1386
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 3 cut(s) 69, 695, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.