pycom06g10930

HpcH/HpaI aldolase/citrate lyase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
16134503 .. 16135582
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1080 bp
ATGGCCACACTGACTTACCCCGCCGCCGCCGCCACAGTCAGAGCCACCAAATCAACAACCCCACCAGCTCTCAGGAAAACCATCTCCGTCATCCCAATCAAACCCAATTCCATCTCCCCACTCAAAACCCTAAACCGCACCTCCAAACCCACCACCTTCTCAATCAAATCCACCGCCTCCTCCGACCACTCCTCCACCGCCACAACCACAATCACCACCACCACCTCCATCTCCCCCTCCCCACTAACCCTCAAGTCCCGCCTCCAAAATGGCGATACCCTATATGGCCTCTTCCTCCTCTCCTTCTCCCCTACCCTCGCCGAGATTGCTGGCCTCTCCGGCTACGACTTCGTCGTCGTCGACATGGAGCACGGCCACGGTGGCATACCCGGAGCCCTCTCCTGCCTCCACGCCTTGGCCGCCACCCAAACCCCCGCCATTCTTCGCTTGCCCGAGACCTCCGCAACTTGGGCCAAGAAAGCCCTAGATCTGGGCCCACAAGGCATCATGTTCCCCATGATCGAATCCTCCAAGGCCGCCAAGGAGGCCGTCTCCTACTGCCGCTTCCCTCCTGCCGGCGTCCGCGGATCCGCCCATACCGTCGTTCGCGCCTCCAGCTACGGCATCGACGAGGGGTATTTGAGTAATTACGAGAACCAGCTGCTGATCATGTGCCAGGTGGAGAGCGAGGAGGGCGTGAAGCACGCGGAGGACATCGCGACCGTTGATGGGATCGACTGTATTCAGATGGGACCGTTGGATCTGAGCGCCAGCTTGGGATACCTGTGGGACCCAGCGAACAAGAAGGTGAGGAAAATGATGGAGGTGGCCGAGAAGGCAGTGCTGGGGTCCGACCCGAAAGAGGGCGGGGCCTACTTGGCCGGGTTCGCTATGCCCCACGATGGGCCTCTCGATTTGGGGACACGTGGATACCACATGGTGTCCGGAGCCGTTGATGTTGGGCTGTTTAGGGGCGCGGCGGTGGAGGACGTGAAGAGGTTCAAGATGAGCTTGATGGACGGTTTAGATGATGAGCAGGAGGATGAGAAGGATGCTGATGAGAAGTACTGGAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

38.28

Weight (kDa)

5.45

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HpcH_HpaI PF03328 95 - 324 6.1e-49 HpcH/HpaI aldolase/citrate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012383)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AccB7I CCANNNNNTGG 1 cut(s) 415
AccI GTMKAC 1 cut(s) 360
AccII CGCG 5 cut(s) 585, 609, 707, 719, 977
AccIII TCCGGA 1 cut(s) 944
AclWI GGATC 4 cut(s) 582, 595, 740, 768
AcoI YGGCCR 5 cut(s) 3, 373, 417, 828, 879
AcvI CACGTG 1 cut(s) 926
AcyI GRCGYC 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 940
AfaI GTAC 1 cut(s) 1067
AfiI CCNNNNNNNGG 9 cut(s) 415, 468, 490, 575, 729, 862, 863, 902, 903
AflIII ACRYGT 1 cut(s) 923
AgsI TTSAA 1 cut(s) 1003
AjiI CACGTC 1 cut(s) 991
AjnI CCWGG 1 cut(s) 675
AluBI AGCT 5 cut(s) 68, 618, 661, 774, 1011
AluI AGCT 5 cut(s) 68, 618, 661, 774, 1011
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 2 cut(s) 449, 556
AlwI GGATC 4 cut(s) 582, 595, 740, 768
AlwNI CAGNNNCTG 1 cut(s) 664
Ama87I CYCGRG 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 944
ApaI GGGCCC 1 cut(s) 497
ApeKI GCWGC 1 cut(s) 661
Asp700I GAANNNNTTC 1 cut(s) 998
AspLEI GCGC 3 cut(s) 611, 770, 977
AspS9I GGNCC 8 cut(s) 471, 493, 494, 752, 790, 849, 870, 905
AsuC2I CCSGG 2 cut(s) 390, 883
AsuHPI GGTGA 2 cut(s) 205, 820
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 3 cut(s) 752, 790, 849
BaeGI GKGCMC 1 cut(s) 497
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 587
BanII GRGCYC 2 cut(s) 397, 497
BbrPI CACGTG 1 cut(s) 926
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 648
BccI CCATC 8 cut(s) 89, 119, 236, 722, 742, 814, 896, 1009
BceAI ACGGC 4 cut(s) 388, 533, 637, 935
BciT130I CCWGG 1 cut(s) 677
BciVI GTATCC 2 cut(s) 773, 923
BclI TGATCA 1 cut(s) 666
BcnI CCSGG 2 cut(s) 390, 883
BcoDI GTCTC 2 cut(s) 449, 556
BfaI CTAG 1 cut(s) 485
BfoI RGCGCY 1 cut(s) 771
BfuI GTATCC 2 cut(s) 773, 923
BglI GCCNNNNNGGC 6 cut(s) 339, 381, 501, 545, 836, 878
BglII AGATCT 1 cut(s) 487
BisI GCNGC 8 cut(s) 24, 27, 30, 420, 537, 562, 662, 978
BlsI GCNGC 8 cut(s) 25, 28, 31, 421, 538, 563, 663, 979
BmcAI AGTACT 1 cut(s) 1067
Bme1390I CCNGG 3 cut(s) 390, 677, 883
Bme18I GGWCC 3 cut(s) 752, 790, 849
BmeT110I CYCGRG 1 cut(s) 452
BmgBI CACGTC 1 cut(s) 991
BmgT120I GGNCC 8 cut(s) 471, 493, 494, 752, 790, 849, 870, 905
BmiI GGNNCC 9 cut(s) 394, 495, 589, 753, 791, 792, 850, 871, 949
BmrFI CCNGG 3 cut(s) 390, 677, 883
BmsI GCATC 3 cut(s) 513, 633, 1042
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpmI CTGGAG 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 2 cut(s) 390, 883
BsaAI YACGTR 1 cut(s) 926
BsaHI GRCGYC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 5 cut(s) 376, 414, 531, 540, 583
BsaWI WCCGGW 1 cut(s) 944
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 176, 206
Bsc4I CCNNNNNNNGG 9 cut(s) 415, 468, 490, 575, 729, 862, 863, 902, 903
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 1073
BseAI TCCGGA 1 cut(s) 944
BseBI CCWGG 1 cut(s) 677
BseDI CCNNGG 5 cut(s) 376, 414, 531, 540, 583
BseGI GGATG 3 cut(s) 90, 1048, 1057
BseLI CCNNNNNNNGG 9 cut(s) 415, 468, 490, 575, 729, 862, 863, 902, 903
BseMII CTCAG 2 cut(s) 85, 755
BseNI ACTGG 1 cut(s) 1073
BseRI GAGGAG 4 cut(s) 169, 181, 287, 704
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 1 cut(s) 648
BseYI CCCAGC 2 cut(s) 793, 844
Bsh1236I CGCG 5 cut(s) 585, 609, 707, 719, 977
Bsh1285I CGRYCG 1 cut(s) 723
BsiEI CGRYCG 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 5 cut(s) 339, 390, 576, 882, 945
BslFI GGGAC 4 cut(s) 241, 765, 803, 934
BslI CCNNNNNNNGG 9 cut(s) 415, 468, 490, 575, 729, 862, 863, 902, 903
BsmAI GTCTC 2 cut(s) 449, 556
BsmBI CGTCTC 1 cut(s) 556
BsmFI GGGAC 4 cut(s) 241, 765, 803, 934
Bso31I GGTCTC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 452
Bsp120I GGGCCC 1 cut(s) 493
Bsp1286I GDGCHC 3 cut(s) 372, 397, 497
Bsp13I TCCGGA 1 cut(s) 944
Bsp143I GATC 6 cut(s) 487, 519, 587, 666, 732, 760
Bsp68I TCGCGA 1 cut(s) 719
BspCNI CTCAG 2 cut(s) 84, 756
BspEI TCCGGA 1 cut(s) 944
BspFNI CGCG 5 cut(s) 585, 609, 707, 719, 977
BspLI GGNNCC 9 cut(s) 394, 495, 589, 753, 791, 792, 850, 871, 949
BspPI GGATC 4 cut(s) 582, 595, 740, 768
BspTNI GGTCTC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 1 cut(s) 1073
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 5 cut(s) 376, 414, 531, 540, 583
BssMI GATC 6 cut(s) 487, 519, 587, 666, 732, 760
BssNI GRCGYC 1 cut(s) 579
BssT1I CCWWGG 3 cut(s) 414, 531, 540
Bst2UI CCWGG 1 cut(s) 677
Bst4CI ACNGT 7 cut(s) 37, 380, 601, 724, 740, 756, 1022
Bst6I CTCTTC 2 cut(s) 296, 989
BstACI GRCGYC 1 cut(s) 579
BstBAI YACGTR 1 cut(s) 926
BstC8I GCNNGC 5 cut(s) 331, 449, 577, 705, 772
BstDEI CTNAG 2 cut(s) 71, 764
BstDSI CCRYGG 2 cut(s) 376, 583
BstF5I GGATG 3 cut(s) 90, 1048, 1057
BstFNI CGCG 5 cut(s) 585, 609, 707, 719, 977
BstH2I RGCGCY 1 cut(s) 771
BstHHI GCGC 3 cut(s) 611, 770, 977
BstKTI GATC 6 cut(s) 490, 522, 590, 669, 735, 763
BstMAI GTCTC 2 cut(s) 449, 556
BstMBI GATC 6 cut(s) 487, 519, 587, 666, 732, 760
BstMCI CGRYCG 1 cut(s) 723
BstNI CCWGG 1 cut(s) 677
BstSCI CCNGG 3 cut(s) 388, 675, 881
BstSLI GKGCMC 1 cut(s) 497
BstUI CGCG 5 cut(s) 585, 609, 707, 719, 977
BstV1I GCAGC 1 cut(s) 648
BstX2I RGATCY 3 cut(s) 487, 587, 760
BstYI RGATCY 3 cut(s) 487, 587, 760
BsuI GTATCC 2 cut(s) 773, 923
BtgI CCRYGG 2 cut(s) 376, 583
BtgZI GCGATG 1 cut(s) 700
BtrI CACGTC 1 cut(s) 991
BtsCI GGATG 3 cut(s) 90, 1048, 1057
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 8, 846
BtuMI TCGCGA 1 cut(s) 719
Cac8I GCNNGC 5 cut(s) 331, 449, 577, 705, 772
CaiI CAGNNNCTG 1 cut(s) 664
CfoI GCGC 3 cut(s) 611, 770, 977
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 8 cut(s) 471, 493, 494, 752, 790, 849, 870, 905
Cfr42I CCGCGG 1 cut(s) 586
CseI GACGC 1 cut(s) 568
Csp6I GTAC 1 cut(s) 1066
CviAII CATG 5 cut(s) 364, 508, 517, 670, 937
CviQI GTAC 1 cut(s) 1066
DdeI CTNAG 2 cut(s) 71, 764
DpnI GATC 6 cut(s) 489, 521, 589, 668, 734, 762
DpnII GATC 6 cut(s) 487, 519, 587, 666, 732, 760
DraIII CACNNNGTG 1 cut(s) 940
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 5 cut(s) 3, 373, 417, 828, 879
Eam1104I CTCTTC 2 cut(s) 296, 989
EarI CTCTTC 2 cut(s) 296, 989
EciI GGCGGA 1 cut(s) 580
Eco130I CCWWGG 3 cut(s) 414, 531, 540
Eco24I GRGCYC 2 cut(s) 397, 497
Eco31I GGTCTC 1 cut(s) 449
Eco47I GGWCC 3 cut(s) 752, 790, 849
Eco72I CACGTG 1 cut(s) 926
Eco88I CYCGRG 1 cut(s) 452
EcoO109I RGGNCCY 2 cut(s) 790, 870
EcoRII CCWGG 1 cut(s) 675
EcoT14I CCWWGG 3 cut(s) 414, 531, 540
EcoT38I GRGCYC 2 cut(s) 397, 497
ErhI CCWWGG 3 cut(s) 414, 531, 540
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 5 cut(s) 367, 511, 520, 673, 940
FalI AAGNNNNNCTT 2 cut(s) 995, 1027
FaqI GGGAC 4 cut(s) 241, 765, 803, 934
FatI CATG 5 cut(s) 363, 507, 516, 669, 936
FauI CCCGC 4 cut(s) 28, 266, 442, 860
FbaI TGATCA 1 cut(s) 666
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 8 cut(s) 24, 27, 30, 420, 537, 562, 662, 978
FokI GGATG 3 cut(s) 77, 1055, 1064
FriOI GRGCYC 2 cut(s) 397, 497
Fsp4HI GCNGC 8 cut(s) 24, 27, 30, 420, 537, 562, 662, 978
FspBI CTAG 1 cut(s) 485
GlaI GCGC 3 cut(s) 610, 769, 976
GluI GCNGC 8 cut(s) 24, 27, 30, 420, 537, 562, 662, 978
GsaI CCCAGC 2 cut(s) 797, 848
GsuI CTGGAG 1 cut(s) 598
HaeII RGCGCY 1 cut(s) 771
HapII CCGG 5 cut(s) 339, 390, 576, 882, 945
HgaI GACGC 1 cut(s) 568
HhaI GCGC 3 cut(s) 611, 770, 977
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 5 cut(s) 367, 511, 520, 673, 940
Hin6I GCGC 3 cut(s) 609, 768, 975
HinP1I GCGC 3 cut(s) 609, 768, 975
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 1 cut(s) 524
HpaII CCGG 5 cut(s) 339, 390, 576, 882, 945
HphI GGTGA 2 cut(s) 205, 820
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 5 cut(s) 41, 184, 747, 765, 853
Hpy188III TCNNGA 5 cut(s) 73, 718, 911, 945, 1003
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 5 cut(s) 356, 359, 362, 605, 632
HpyAV CCTTC 5 cut(s) 166, 313, 799, 829, 1042
HpyCH4III ACNGT 7 cut(s) 37, 380, 601, 724, 740, 756, 1022
HpyCH4IV ACGT 2 cut(s) 925, 990
HpyF3I CTNAG 2 cut(s) 71, 764
HpySE526I ACGT 2 cut(s) 925, 990
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 5 cut(s) 367, 511, 520, 673, 940
HspAI GCGC 3 cut(s) 609, 768, 975
KflI GGGWCCC 1 cut(s) 790
Kpn2I TCCGGA 1 cut(s) 944
KroI GCCGGC 1 cut(s) 575
KroNI GCCGGC 1 cut(s) 577
Ksp22I TGATCA 1 cut(s) 666
KspI CCGCGG 1 cut(s) 586
Kzo9I GATC 6 cut(s) 487, 519, 587, 666, 732, 760
LmnI GCTCC 3 cut(s) 367, 392, 947
Lsp1109I GCAGC 1 cut(s) 648
LweI GCATC 3 cut(s) 513, 633, 1042
MaeI CTAG 1 cut(s) 485
MaeII ACGT 2 cut(s) 925, 990
MalI GATC 6 cut(s) 489, 521, 589, 668, 734, 762
MboI GATC 6 cut(s) 487, 519, 587, 666, 732, 760
MboII GAAGA 3 cut(s) 283, 434, 1006
MflI RGATCY 3 cut(s) 487, 587, 760
MhlI GDGCHC 3 cut(s) 372, 397, 497
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 106, 646
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 207, 738, 876
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 944
MroNI GCCGGC 1 cut(s) 575
MroXI GAANNNNTTC 1 cut(s) 998
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 585, 661
MspI CCGG 5 cut(s) 339, 390, 576, 882, 945
MspR9I CCNGG 3 cut(s) 390, 677, 883
MvaI CCWGG 1 cut(s) 677
MvnI CGCG 5 cut(s) 585, 609, 707, 719, 977
NaeI GCCGGC 1 cut(s) 577
NciI CCSGG 2 cut(s) 390, 883
NdeII GATC 6 cut(s) 487, 519, 587, 666, 732, 760
NgoMIV GCCGGC 1 cut(s) 575
NlaIII CATG 5 cut(s) 367, 511, 520, 673, 940
NlaIV GGNNCC 9 cut(s) 394, 495, 589, 753, 791, 792, 850, 871, 949
NmeAIII GCCGAG 2 cut(s) 346, 856
NruI TCGCGA 1 cut(s) 719
PcsI WCGNNNNNNNCGW 3 cut(s) 351, 357, 627
PdiI GCCGGC 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 998
PfeI GAWTC 1 cut(s) 524
PflFI GACNNNGTC 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 415
PkrI GCNGC 8 cut(s) 25, 28, 31, 421, 538, 563, 663, 979
PmaCI CACGTG 1 cut(s) 926
PmlI CACGTG 1 cut(s) 926
Ppu21I YACGTR 1 cut(s) 926
PpuMI RGGWCCY 1 cut(s) 790
Psp5II RGGWCCY 1 cut(s) 790
Psp6I CCWGG 1 cut(s) 675
PspCI CACGTG 1 cut(s) 926
PspFI CCCAGC 2 cut(s) 793, 844
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 9 cut(s) 394, 495, 589, 753, 791, 792, 850, 871, 949
PspOMI GGGCCC 1 cut(s) 493
PspPI GGNCC 8 cut(s) 471, 493, 494, 752, 790, 849, 870, 905
PspPPI RGGWCCY 1 cut(s) 790
PstNI CAGNNNCTG 1 cut(s) 664
PsuI RGATCY 3 cut(s) 487, 587, 760
PsyI GACNNNGTC 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 661
RruI TCGCGA 1 cut(s) 719
RsaI GTAC 1 cut(s) 1067
RsaNI GTAC 1 cut(s) 1066
SacII CCGCGG 1 cut(s) 586
SalI GTCGAC 1 cut(s) 359
SatI GCNGC 8 cut(s) 24, 27, 30, 420, 537, 562, 662, 978
Sau3AI GATC 6 cut(s) 487, 519, 587, 666, 732, 760
Sau96I GGNCC 8 cut(s) 471, 493, 494, 752, 790, 849, 870, 905
ScaI AGTACT 1 cut(s) 1067
ScrFI CCNGG 3 cut(s) 390, 677, 883
SduI GDGCHC 3 cut(s) 372, 397, 497
SfaNI GCATC 3 cut(s) 513, 633, 1042
SfiI GGCCNNNNNGGCC 1 cut(s) 878
Sfr303I CCGCGG 1 cut(s) 586
SgrBI CCGCGG 1 cut(s) 586
SinI GGWCC 3 cut(s) 752, 790, 849
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 2 cut(s) 106, 646
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 388, 675, 881
StyI CCWWGG 3 cut(s) 414, 531, 540
TaaI ACNGT 7 cut(s) 37, 380, 601, 724, 740, 756, 1022
TaiI ACGT 2 cut(s) 928, 993
TaqI TCGA 5 cut(s) 360, 522, 627, 735, 912
TasI AATT 2 cut(s) 106, 646
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 7 cut(s) 26, 29, 32, 422, 539, 564, 980
TfiI GAWTC 1 cut(s) 524
TscAI CASTG 2 cut(s) 15, 846
TseI GCWGC 1 cut(s) 661
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 2 cut(s) 15, 846
Tth111I GACNNNGTC 1 cut(s) 350
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 3 cut(s) 752, 790, 849
XmiI GTMKAC 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 998
XspI CTAG 1 cut(s) 485
ZrmI AGTACT 1 cut(s) 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.