pycom06g15560

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0006606
Physical Location & Seq
Reverse (-)
20077015 .. 20079358
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 732 bp
ATGGAAGAAAAAGTGTCCGGTTCGCCGGCGAGCTTCATCGACAAGCCAGTGATTCCCGGCGATGTGGTTCTCGACCTCTCCGACATGACTAACCAAACCATCAAGCTCGGCGGCGGTCTCCGCCAGGATTTTGATTCAATAGTTGCGATGAAGGCTGGGACTTTGAGGTTTACGAAGCCGAACAAGTATTGGGTCGAAACATCTCAGAAAAGGTATGTGCCTTGTGTGGGGGACTCGGTACTTGGAATCGTGGCGGATTCGAGAGCAGATAATTTTCTGGTGGACATTAAAGGACCTACATTGGCGTATCTGCCGGTGCTTGCTTTCGAAGGAGGAACTAGGCGAAACATACCAAAGTTTGAGGTGGGTACATTGCTGTATGTTCGGGTTGTGAAGGCAAACCCTGGCATGAATCCTGAGTTGTCATGCACTGATGCCAGTGGAAAAGCAGCAGAGTATGGCGTCCTTAAAGATGGCTACAATTTTGACTGTTCGACTGGCCTTTCAAGAATGTTGCTGAGATCGCCAAGATGTCCAGTTCTCGAGGAACTTGGGAAGAAAATTTCCTTTGAAATAGCAGTTGGTTTGAACGGCCGTGTTTGGGTCAATGCTGGTTCGCCATCTTTGATCATCGTCGTTTCTAATGCAATCATGAACTCAGAATCTCTGACTGGAGTGAAGCAGAGAATCATGGTGGATAAACTCATTCAGAATTTGAAGTTATCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

244

Amino Acids

26.33

Weight (kDa)

8.82

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrp40_N PF18311 34 - 71 3.2e-09 Exosome complex exonuclease Rrp40 N-terminal domain
RRP40_S1 PF21262 72 - 154 2.2e-27 Exosome complex component RRP40, S1 domain
KH_6 PF15985 159 - 207 1.3e-15 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 111, 114, 121, 254
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 2 cut(s) 561, 712
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 240, 370
AfiI CCNNNNNNNGG 2 cut(s) 227, 601
AgsI TTSAA 5 cut(s) 138, 507, 572, 589, 718
AjnI CCWGG 2 cut(s) 123, 403
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AluBI AGCT 2 cut(s) 33, 106
AluI AGCT 2 cut(s) 33, 106
Alw26I GTCTC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 2 cut(s) 499, 592
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 2 cut(s) 561, 712
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 57
AsuII TTCGAA 1 cut(s) 327
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 461
BccI CCATC 3 cut(s) 107, 467, 628
BceAI ACGGC 2 cut(s) 579, 607
BciT130I CCWGG 2 cut(s) 125, 405
BclI TGATCA 1 cut(s) 627
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 339
BisI GCNGC 2 cut(s) 112, 450
BlsI GCNGC 2 cut(s) 113, 451
Bme1390I CCNGG 3 cut(s) 57, 125, 405
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 293
BmrFI CCNGG 3 cut(s) 57, 125, 405
BmsI GCATC 1 cut(s) 424
BpmI CTGGAG 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 327
BpuMI CCSGG 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 403
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 601
Bse118I RCCGGY 2 cut(s) 25, 313
Bse1I ACTGG 5 cut(s) 47, 438, 502, 536, 676
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 2 cut(s) 125, 405
BseDI CCNNGG 1 cut(s) 403
BseLI CCNNNNNNNGG 2 cut(s) 227, 601
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 4 cut(s) 218, 408, 509, 672
BseNI ACTGG 5 cut(s) 47, 438, 502, 536, 676
BseX3I CGGCCG 1 cut(s) 592
BseXI GCAGC 1 cut(s) 461
BseYI CCCAGC 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 595
BshFI GGCC 2 cut(s) 501, 594
BsiEI CGRYCG 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 4 cut(s) 18, 26, 57, 314
BslFI GGGAC 2 cut(s) 172, 245
BslI CCNNNNNNNGG 2 cut(s) 227, 601
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 2 cut(s) 172, 245
BsnI GGCC 2 cut(s) 501, 594
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 542
Bsp119I TTCGAA 1 cut(s) 327
Bsp143I GATC 2 cut(s) 521, 627
BspACI CCGC 4 cut(s) 111, 114, 121, 254
BspANI GGCC 2 cut(s) 501, 594
BspCNI CTCAG 4 cut(s) 217, 409, 510, 671
BspHI TCATGA 1 cut(s) 651
BspT104I TTCGAA 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 371
BsrFI RCCGGY 2 cut(s) 25, 313
BsrI ACTGG 5 cut(s) 47, 438, 502, 536, 676
BssAI RCCGGY 2 cut(s) 25, 313
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 2 cut(s) 521, 627
BssNI GRCGYC 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 125, 405
Bst4CI ACNGT 1 cut(s) 491
BstACI GRCGYC 1 cut(s) 462
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 27, 31, 321
BstDEI CTNAG 4 cut(s) 204, 417, 518, 658
BstKTI GATC 2 cut(s) 524, 630
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 2 cut(s) 521, 627
BstMCI CGRYCG 1 cut(s) 595
BstMWI GCNNNNNNNGC 3 cut(s) 120, 152, 523
BstNI CCWGG 2 cut(s) 125, 405
BstSCI CCNGG 3 cut(s) 55, 123, 403
BstV1I GCAGC 1 cut(s) 461
BstZI CGGCCG 1 cut(s) 592
BsuRI GGCC 2 cut(s) 501, 594
BtgZI GCGATG 2 cut(s) 75, 161
BtsIMutI CAGTG 3 cut(s) 54, 429, 445
Cac8I GCNNGC 3 cut(s) 27, 31, 321
CciI TCATGA 1 cut(s) 651
Cfr10I RCCGGY 2 cut(s) 25, 313
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 451
Csp6I GTAC 2 cut(s) 239, 369
CviAII CATG 6 cut(s) 85, 409, 426, 652, 691, 729
CviJI RGCY 8 cut(s) 33, 46, 106, 155, 178, 477, 501, 594
CviKI_1 RGCY 8 cut(s) 33, 46, 106, 155, 178, 477, 501, 594
CviQI GTAC 2 cut(s) 239, 369
DdeI CTNAG 4 cut(s) 204, 417, 518, 658
DpnI GATC 2 cut(s) 523, 629
DpnII GATC 2 cut(s) 521, 627
EaeI YGGCCR 1 cut(s) 592
EagI CGGCCG 1 cut(s) 592
EciI GGCGGA 2 cut(s) 110, 269
EclXI CGGCCG 1 cut(s) 592
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 293
Eco52I CGGCCG 1 cut(s) 592
Eco88I CYCGRG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 123, 403
FaeI CATG 6 cut(s) 88, 412, 429, 655, 694, 732
FaqI GGGAC 2 cut(s) 172, 245
FatI CATG 6 cut(s) 84, 408, 425, 651, 690, 728
FbaI TGATCA 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 112, 450
Fsp4HI GCNGC 2 cut(s) 112, 450
FspBI CTAG 1 cut(s) 339
GluI GCNGC 2 cut(s) 112, 450
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 2 cut(s) 501, 594
HapII CCGG 4 cut(s) 18, 26, 57, 314
HgaI GACGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 6 cut(s) 88, 412, 429, 655, 694, 732
HinfI GANTC 8 cut(s) 52, 134, 233, 246, 257, 412, 662, 687
HpaII CCGG 4 cut(s) 18, 26, 57, 314
Hpy166II GTNNAC 2 cut(s) 171, 283
Hpy188I TCNGA 5 cut(s) 82, 207, 661, 669, 711
Hpy188III TCNNGA 6 cut(s) 71, 261, 416, 507, 542, 652
Hpy8I GTNNAC 2 cut(s) 171, 283
Hpy99I CGWCG 1 cut(s) 638
HpyAV CCTTC 3 cut(s) 145, 323, 388
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4V TGCA 2 cut(s) 429, 647
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 152, 523
HpyF3I CTNAG 4 cut(s) 204, 417, 518, 658
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 6 cut(s) 88, 412, 429, 655, 694, 732
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 2 cut(s) 521, 627
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 339
MalI GATC 2 cut(s) 523, 629
MboI GATC 2 cut(s) 521, 627
MboII GAAGA 2 cut(s) 17, 568
MluCI AATT 4 cut(s) 271, 481, 561, 712
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 5 cut(s) 86, 159, 326, 355, 538
MreI CGCCGGCG 1 cut(s) 25
MroNI GCCGGC 1 cut(s) 25
MseI TTAA 2 cut(s) 288, 468
MspI CCGG 4 cut(s) 18, 26, 57, 314
MspR9I CCNGG 3 cut(s) 57, 125, 405
MvaI CCWGG 2 cut(s) 125, 405
MwoI GCNNNNNNNGC 3 cut(s) 120, 152, 523
NaeI GCCGGC 1 cut(s) 27
NciI CCSGG 1 cut(s) 57
NdeII GATC 2 cut(s) 521, 627
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 6 cut(s) 88, 412, 429, 655, 694, 732
NmeAIII GCCGAG 1 cut(s) 87
NspV TTCGAA 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 542
PagI TCATGA 1 cut(s) 651
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 7 cut(s) 52, 134, 246, 257, 412, 662, 687
PkrI GCNGC 2 cut(s) 113, 451
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 123, 403
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 2 cut(s) 123, 403
PspPI GGNCC 1 cut(s) 293
PspPPI RGGWCCY 1 cut(s) 293
RsaI GTAC 2 cut(s) 240, 370
RsaNI GTAC 2 cut(s) 239, 369
SaqAI TTAA 2 cut(s) 288, 468
SatI GCNGC 2 cut(s) 112, 450
Sau3AI GATC 2 cut(s) 521, 627
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 57, 125, 405
SetI ASST 7 cut(s) 35, 78, 108, 170, 215, 298, 366
SfaNI GCATC 1 cut(s) 424
Sfr274I CTCGAG 1 cut(s) 542
SfuI TTCGAA 1 cut(s) 327
SgrAI CRCCGGYG 1 cut(s) 25
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 4 cut(s) 271, 481, 561, 712
SsiI CCGC 4 cut(s) 111, 114, 121, 254
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 3 cut(s) 55, 123, 403
TaaI ACNGT 1 cut(s) 491
TaqI TCGA 7 cut(s) 39, 72, 195, 260, 327, 494, 543
TasI AATT 4 cut(s) 271, 481, 561, 712
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 7 cut(s) 52, 134, 246, 257, 412, 662, 687
Tru1I TTAA 2 cut(s) 288, 468
Tru9I TTAA 2 cut(s) 288, 468
TscAI CASTG 3 cut(s) 54, 436, 445
TseI GCWGC 1 cut(s) 449
TspDTI ATGAA 4 cut(s) 25, 164, 425, 668
TspRI CASTG 3 cut(s) 54, 436, 445
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 2 cut(s) 561, 712
XhoI CTCGAG 1 cut(s) 542
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.