Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008341

Physical Location & Seq

Genomic Coordinates Forward (+)

20482874 .. 20484471

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTTAATTAGCCGTTGCGCAGTTCCATTCTCTTTGGGGACTTTCTTCAAACACCTTCCGGTATCGAATCCGACGACGCTCTGTCCGTACAGATTCAGACCCAAAACCCTAACCGCCACCGCAATTCGTAGCTTCTCTTACTTTGAGACGTTGGATTCCCGCCAAAAAGAGCAAGTCCATCTCTACGTCGACACTCTCCTCCAATGGAACCAGAAAATGAATTTGACGGCTGTTAAGGAGGCGGACGAGGTAATGGAGAGGCACATTGAGGACTCGCTCGCAATCATACCCCCTATCAGAAACTCATATTTCTCTCACTGTAAAGTTCCGTCCGAAAGTCTCAGCCTTGTCGATGTGGGGAGCGGTGCAGGTCTTCCGGGGTTGATCTTAGCCATTGCTTGCCCAGGTTGGGAAGTGACCCTCATGGAGTCTATGAACAAGCGATGCGTTTTCTTGGAGCATGTTGTCGGTCACATTGGTTTGTCGAATGTTCAAGTTGTAAGAGGAAGAGCAGAGAATTTGGGGCAGGCTCTTTGTTTCAGGGAAAAATTTGATGTAGCGGTAGCCAGAGCGGTTGCAGAAATGAGAGTTTTAGCTGAATACTGTCTTCCTCTGGTTTGCGTTGGCGGTTTGTTTGTTGCTGCAAAGGGTCACGATCCTCAGGAGGAAGTTAGGAATGCAGAAAAAGCAATTCAGATTTTGGGTGCTTCCGTATTGCAACAATGCACAGTGGAATCGCACAGCCCGTATGGACAAAGAACTGCCATCGTATGTTTGAAAACTAGTCCTACGCCAAGGAAGTATCCTCGTGATCCAGGTACTCCAGAGAAAATACCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GidB

Protein Analysis

281

Amino Acids

31.01

Weight (kDa)

8.31

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50110 AT5G50110
fragaria_vesca	FvH4_5g16400 FvH4_5g16400 FvH4_5g16400
malus_domestica	MD06G1181000.v1.1 MD13G1183500.v1.1 MD14G1186100.v1.1
prunus_persica	Prupe.5G179000_v2.0.a1
pyrus_communis	pycom06g16010 pycom14g15490
rosa_chinensis	RchiOBHm_Chr7g0179701
rosa_laevigata	RLG00000005329
rosa_multiflora	Rmu_sc0004156.1_g000001 Rmu_sc0005329.1_g000036
rosa_roxburghii	Rroxscaffold_155G00443800 Rroxscaffold_3G00273540
rosa_rugosa	Rorug06G0427500
rosa_samantha	Rh7AG026900 Rh7BG026000 Rh7CG028000 Rh7DG027600
rosa_wichuraiana	Rw7G002160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	359
AccBSI	CCGCTC	2 cut(s)	363, 572
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	8 cut(s)	114, 120, 160, 242, 363, 560, 572, 627
AclWI	GGATC	2 cut(s)	650, 806
AcsI	RAATTY	3 cut(s)	220, 517, 548
AfaI	GTAC	2 cut(s)	89, 820
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	3 cut(s)	49, 494, 778
AhdI	GACNNNNNGTC	1 cut(s)	81
AhlI	ACTAGT	1 cut(s)	782
AjnI	CCWGG	2 cut(s)	403, 814
AluBI	AGCT	2 cut(s)	132, 596
AluI	AGCT	2 cut(s)	132, 596
Alw26I	GTCTC	2 cut(s)	140, 344
AlwI	GGATC	2 cut(s)	650, 806
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	3 cut(s)	220, 517, 548
AspLEI	GCGC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	378
AxyI	CCTNAGG	1 cut(s)	660
BauI	CACGAG	1 cut(s)	807
BbsI	GAAGAC	2 cut(s)	365, 599
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	2 cut(s)	186, 773
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	2 cut(s)	405, 816
BciVI	GTATCC	1 cut(s)	813
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	140, 344
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	1 cut(s)	783
BfuAI	ACCTGC	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	813
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
Bme1390I	CCNGG	3 cut(s)	378, 405, 816
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	3 cut(s)	378, 405, 816
BmsI	GCATC	1 cut(s)	434
BpiI	GAAGAC	2 cut(s)	365, 599
BpmI	CTGGAG	1 cut(s)	807
BpuMI	CCSGG	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	377, 403, 794
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse21I	CCTNAGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	405, 816
BseDI	CCNNGG	3 cut(s)	377, 403, 794
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	355, 674
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	59, 377
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	140, 344
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	384, 655, 811
BspACI	CCGC	8 cut(s)	114, 120, 160, 242, 363, 560, 572, 627
BspCNI	CTCAG	2 cut(s)	354, 673
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	650, 806
BspQI	GCTCTTC	1 cut(s)	502
BsrBI	CCGCTC	2 cut(s)	363, 572
BsrDI	GCAATG	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	377, 403, 794
BssMI	GATC	3 cut(s)	384, 655, 811
BssSI	CACGAG	1 cut(s)	807
BssT1I	CCWWGG	1 cut(s)	794
Bst2BI	CACGAG	1 cut(s)	807
Bst2UI	CCWGG	2 cut(s)	405, 816
Bst4CI	ACNGT	3 cut(s)	320, 605, 730
Bst6I	CTCTTC	1 cut(s)	502
BstC8I	GCNNGC	3 cut(s)	279, 400, 528
BstDEI	CTNAG	3 cut(s)	341, 388, 660
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	3 cut(s)	387, 658, 814
BstMAI	GTCTC	2 cut(s)	140, 344
BstMBI	GATC	3 cut(s)	384, 655, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	2 cut(s)	405, 816
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	376, 403, 814
BstV1I	GCAGC	1 cut(s)	628
BstV2I	GAAGAC	2 cut(s)	365, 599
Bsu36I	CCTNAGG	1 cut(s)	660
BsuI	GTATCC	1 cut(s)	813
BtgZI	GCGATG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	316, 735
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	3 cut(s)	279, 400, 528
CfoI	GCGC	1 cut(s)	20
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	88, 819
CviAII	CATG	2 cut(s)	424, 461
CviJI	RGCY	9 cut(s)	12, 132, 230, 345, 392, 530, 566, 596, 744
CviKI_1	RGCY	9 cut(s)	12, 132, 230, 345, 392, 530, 566, 596, 744
CviQI	GTAC	2 cut(s)	88, 819
DdeI	CTNAG	3 cut(s)	341, 388, 660
DpnI	GATC	3 cut(s)	386, 657, 813
DpnII	GATC	3 cut(s)	384, 655, 811
DriI	GACNNNNNGTC	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	502
Eam1105I	GACNNNNNGTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	794
Eco81I	CCTNAGG	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	403, 814
EcoT14I	CCWWGG	1 cut(s)	794
ErhI	CCWWGG	1 cut(s)	794
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	2 cut(s)	427, 464
FaiI	YATR	7 cut(s)	287, 307, 425, 434, 462, 750, 772
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	2 cut(s)	423, 460
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	642
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	1 cut(s)	783
FspI	TGCGCA	1 cut(s)	19
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	807
HapII	CCGG	2 cut(s)	59, 377
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	427, 464
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	6 cut(s)	67, 93, 155, 272, 428, 734
HpaII	CCGG	2 cut(s)	59, 377
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	5 cut(s)	72, 98, 299, 334, 696
Hpy188III	TCNNGA	4 cut(s)	653, 662, 809, 824
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	3 cut(s)	76, 79, 191
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	3 cut(s)	320, 605, 730
HpyCH4IV	ACGT	2 cut(s)	149, 186
HpyCH4V	TGCA	6 cut(s)	368, 578, 644, 680, 718, 726
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	3 cut(s)	341, 388, 660
HpySE526I	ACGT	2 cut(s)	149, 186
Hsp92II	CATG	2 cut(s)	427, 464
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	384, 655, 811
LguI	GCTCTTC	1 cut(s)	502
LmnI	GCTCC	2 cut(s)	360, 457
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	2 cut(s)	149, 186
MaeIII	GTNAC	3 cut(s)	415, 470, 650
MalI	GATC	3 cut(s)	386, 657, 813
MbiI	CCGCTC	2 cut(s)	363, 572
MboI	GATC	3 cut(s)	384, 655, 811
MboII	GAAGA	4 cut(s)	37, 365, 519, 599
MluCI	AATT	6 cut(s)	6, 123, 220, 517, 548, 690
MlyI	GAGTC	2 cut(s)	266, 437
MmeI	TCCRAC	2 cut(s)	95, 132
MseI	TTAA	2 cut(s)	5, 234
MspI	CCGG	2 cut(s)	59, 377
MspR9I	CCNGG	3 cut(s)	378, 405, 816
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	2 cut(s)	405, 816
MwoI	GCNNNNNNNGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	3 cut(s)	384, 655, 811
NlaIII	CATG	2 cut(s)	427, 464
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	3 cut(s)	415, 470, 650
NsbI	TGCGCA	1 cut(s)	19
NspI	RCATGY	1 cut(s)	464
PciSI	GCTCTTC	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	3 cut(s)	71, 83, 743
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	4 cut(s)	67, 93, 155, 734
PkrI	GCNGC	1 cut(s)	643
PleI	GAGTC	2 cut(s)	266, 436
PpsI	GAGTC	2 cut(s)	266, 436
Psp6I	CCWGG	2 cut(s)	403, 814
PspGI	CCWGG	2 cut(s)	403, 814
PspN4I	GGNNCC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	89, 820
RsaNI	GTAC	2 cut(s)	88, 819
SalI	GTCGAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	5, 234
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	3 cut(s)	384, 655, 811
SchI	GAGTC	2 cut(s)	266, 437
ScrFI	CCNGG	3 cut(s)	378, 405, 816
SfaNI	GCATC	1 cut(s)	434
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	6 cut(s)	6, 123, 220, 517, 548, 690
SsiI	CCGC	8 cut(s)	114, 120, 160, 242, 363, 560, 572, 627
SspMI	CTAG	1 cut(s)	783
StyD4I	CCNGG	3 cut(s)	376, 403, 814
StyI	CCWWGG	1 cut(s)	794
TaaI	ACNGT	3 cut(s)	320, 605, 730
TaiI	ACGT	2 cut(s)	152, 189
TaqI	TCGA	4 cut(s)	65, 189, 351, 485
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	6 cut(s)	6, 123, 220, 517, 548, 690
TfiI	GAWTC	4 cut(s)	67, 93, 155, 734
Tru1I	TTAA	2 cut(s)	5, 234
Tru9I	TTAA	2 cut(s)	5, 234
TscAI	CASTG	2 cut(s)	323, 735
TseFI	GTSAC	3 cut(s)	415, 470, 650
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	3 cut(s)	415, 470, 650
TspDTI	ATGAA	2 cut(s)	233, 449
TspGWI	ACGGA	3 cut(s)	75, 318, 700
TspRI	CASTG	2 cut(s)	323, 735
XapI	RAATTY	3 cut(s)	220, 517, 548
XceI	RCATGY	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.