Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004156.1

Orthogroup ID

OG0008341

Physical Location & Seq

Genomic Coordinates Forward (+)

134 .. 1774

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004156.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgttgttgttggttggccgctgcgcgctagtcccattctctctggggactttcttcaaacaccttccgcgcccaaaacccagtcccatctttccctacacaagcacacccaaagccctaaccaccgccacaatccactcctcctctcacttcgaagccttggactcccgccaaaaacaccaaatccatctctacgtcgacacccttctcgaatggaaccagagaatgaacttgaccgcggtcagagaagcgggtgaggtaatggagaggcacattgaagactcgctggcgatcataccgcccataacagactcttatctctcgcattgtggcgcctcgtgtgggaatgtcagcgttgtggatgtgggaagcggcgcgggcctgcccgggttggttttggccattgcttgcccggaatggaaagtgaccctgatggagtcaatgaacaaaagatgtgtttttttggagcatgctgttaatcatgttggtttatcgaatgtggagattgttagaggaagagcagagaacttgggtcaggatgtatgcttcagggagaaatatgatgtagcagtggccagagcggttgcggagatgagaattttggcggaatactgtcttcctctggttcgcgttggtggcttgtttgtagctgcaaagggccatgatcctcagatggaaattaggaatgcagaaaaagcaattcaaattttgggtgcttccatatcacaactgtgcccagtggaatctcacagcccatatggacaaagaacggccattgtatgtctgaaaaccagtcccaccccaaagaagtatcctcgtgatccaggtaccccggtgaaagtaccactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GidB

Protein Analysis

283

Amino Acids

30.98

Weight (kDa)

8.35

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50110 AT5G50110
fragaria_vesca	FvH4_5g16400 FvH4_5g16400 FvH4_5g16400
malus_domestica	MD06G1181000.v1.1 MD13G1183500.v1.1 MD14G1186100.v1.1
prunus_persica	Prupe.5G179000_v2.0.a1
pyrus_communis	pycom06g16010 pycom14g15490
rosa_chinensis	RchiOBHm_Chr7g0179701
rosa_laevigata	RLG00000005329
rosa_multiflora	Rmu_sc0004156.1_g000001 Rmu_sc0005329.1_g000036
rosa_roxburghii	Rroxscaffold_155G00443800 Rroxscaffold_3G00273540
rosa_rugosa	Rorug06G0427500
rosa_samantha	Rh7AG026900 Rh7BG026000 Rh7CG028000 Rh7DG027600
rosa_wichuraiana	Rw7G002160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	827
AccB1I	GGYRCC	2 cut(s)	332, 827
AccBSI	CCGCTC	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	5 cut(s)	26, 70, 239, 377, 630
AclWI	GGATC	2 cut(s)	659, 815
AcoI	YGGCCR	4 cut(s)	16, 399, 573, 771
AcsI	RAATTY	2 cut(s)	597, 705
AcuI	CTGAAG	1 cut(s)	532
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	2 cut(s)	829, 843
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	58, 278, 704
AjnI	CCWGG	1 cut(s)	823
AleI	CACNNNNGTG	1 cut(s)	730
AluBI	AGCT	1 cut(s)	650
AluI	AGCT	1 cut(s)	650
AlwI	GGATC	2 cut(s)	659, 815
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	6 cut(s)	16, 379, 399, 573, 658, 771
ApeKI	GCWGC	2 cut(s)	21, 650
ApoI	RAATTY	2 cut(s)	597, 705
Asp718I	GGTACC	1 cut(s)	827
AspLEI	GCGC	5 cut(s)	26, 28, 72, 335, 377
AspS9I	GGNCC	2 cut(s)	379, 658
AsuC2I	CCSGG	4 cut(s)	387, 388, 413, 833
AsuHPI	GGTGA	2 cut(s)	266, 847
AsuII	TTCGAA	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	737
BaeI	ACNNNNGTAYC	2 cut(s)	819, 852
BalI	TGGCCA	2 cut(s)	401, 575
BanI	GGYRCC	2 cut(s)	332, 827
BauI	CACGAG	2 cut(s)	337, 816
BbsI	GAAGAC	2 cut(s)	285, 608
BbvI	GCAGC	2 cut(s)	8, 637
BccI	CCATC	4 cut(s)	95, 195, 427, 667
BceAI	ACGGC	1 cut(s)	786
BciT130I	CCWGG	1 cut(s)	825
BciVI	GTATCC	1 cut(s)	822
BcnI	CCSGG	4 cut(s)	387, 388, 413, 833
BfaI	CTAG	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	822
BisI	GCNGC	4 cut(s)	19, 22, 373, 651
BlsI	GCNGC	4 cut(s)	20, 23, 374, 652
Bme1390I	CCNGG	5 cut(s)	387, 388, 413, 825, 833
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	379, 658
BmiI	GGNNCC	3 cut(s)	218, 334, 829
BmrFI	CCNGG	5 cut(s)	387, 388, 413, 825, 833
BmrI	ACTGGG	2 cut(s)	75, 731
BmuI	ACTGGG	2 cut(s)	75, 731
BoxI	GACNNNNGTC	1 cut(s)	239
BpiI	GAAGAC	2 cut(s)	285, 608
Bpu14I	TTCGAA	1 cut(s)	153
BpuMI	CCSGG	4 cut(s)	387, 388, 413, 833
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	4 cut(s)	159, 237, 386, 831
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	3 cut(s)	81, 737, 792
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	4 cut(s)	159, 237, 386, 831
BseGI	GGATG	2 cut(s)	367, 544
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	683
BseNI	ACTGG	3 cut(s)	81, 737, 792
BsePI	GCGCGC	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	130, 133
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	2 cut(s)	8, 637
Bsh1236I	CGCG	5 cut(s)	26, 70, 239, 377, 630
BshFI	GGCC	6 cut(s)	18, 381, 401, 575, 660, 773
BshNI	GGYRCC	2 cut(s)	332, 827
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	3 cut(s)	387, 413, 833
BslFI	GGGAC	4 cut(s)	17, 61, 69, 780
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmFI	GGGAC	4 cut(s)	17, 61, 69, 780
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	6 cut(s)	18, 381, 401, 575, 660, 773
BsoBI	CYCGRG	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp143I	GATC	3 cut(s)	291, 664, 820
BspANI	GGCC	6 cut(s)	18, 381, 401, 575, 660, 773
BspCNI	CTCAG	1 cut(s)	682
BspFNI	CGCG	5 cut(s)	26, 70, 239, 377, 630
BspLI	GGNNCC	3 cut(s)	218, 334, 829
BspPI	GGATC	2 cut(s)	659, 815
BspQI	GCTCTTC	1 cut(s)	511
BspT104I	TTCGAA	1 cut(s)	153
BspT107I	GGYRCC	2 cut(s)	332, 827
BsrBI	CCGCTC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	81, 737, 792
BssECI	CCNNGG	4 cut(s)	159, 237, 386, 831
BssHII	GCGCGC	1 cut(s)	24
BssMI	GATC	3 cut(s)	291, 664, 820
BssNI	GRCGYC	1 cut(s)	333
BssSI	CACGAG	2 cut(s)	337, 816
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	2 cut(s)	337, 816
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	2 cut(s)	614, 732
Bst6I	CTCTTC	1 cut(s)	511
BstACI	GRCGYC	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	6 cut(s)	26, 288, 379, 383, 409, 471
BstDEI	CTNAG	1 cut(s)	669
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	367, 544
BstFNI	CGCG	5 cut(s)	26, 70, 239, 377, 630
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	5 cut(s)	26, 28, 72, 335, 377
BstKTI	GATC	3 cut(s)	294, 667, 823
BstMBI	GATC	3 cut(s)	291, 664, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	378, 636, 695
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	473
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	5 cut(s)	385, 386, 411, 823, 831
BstSLI	GKGCMC	1 cut(s)	737
BstUI	CGCG	5 cut(s)	26, 70, 239, 377, 630
BstV1I	GCAGC	2 cut(s)	8, 637
BstV2I	GAAGAC	2 cut(s)	285, 608
BsuI	GTATCC	1 cut(s)	822
BsuRI	GGCC	6 cut(s)	18, 381, 401, 575, 660, 773
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	367, 544
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	576, 744
Cac8I	GCNNGC	6 cut(s)	26, 288, 379, 383, 409, 471
CfoI	GCGC	5 cut(s)	26, 28, 72, 335, 377
Cfr13I	GGNCC	2 cut(s)	379, 658
Cfr42I	CCGCGG	1 cut(s)	240
Cfr9I	CCCGGG	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	828, 842
CviAII	CATG	3 cut(s)	470, 482, 662
CviQI	GTAC	2 cut(s)	828, 842
DdeI	CTNAG	1 cut(s)	669
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	3 cut(s)	293, 666, 822
DpnII	GATC	3 cut(s)	291, 664, 820
EaeI	YGGCCR	4 cut(s)	16, 399, 573, 771
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
EciI	GGCGGA	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	532
Eco88I	CYCGRG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	823
EcoT14I	CCWWGG	1 cut(s)	159
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	473, 485, 665
FaqI	GGGAC	4 cut(s)	17, 61, 69, 780
FatI	CATG	3 cut(s)	469, 481, 661
FauI	CCCGC	3 cut(s)	176, 244, 370
FauNDI	CATATG	1 cut(s)	757
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	19, 22, 373, 651
FokI	GGATG	2 cut(s)	374, 551
Fsp4HI	GCNGC	4 cut(s)	19, 22, 373, 651
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	5 cut(s)	25, 27, 71, 334, 376
GluI	GCNGC	4 cut(s)	19, 22, 373, 651
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	6 cut(s)	18, 381, 401, 575, 660, 773
HapII	CCGG	3 cut(s)	387, 413, 833
HhaI	GCGC	5 cut(s)	26, 28, 72, 335, 377
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	473, 485, 665
Hin6I	GCGC	5 cut(s)	24, 26, 70, 333, 375
HinP1I	GCGC	5 cut(s)	24, 26, 70, 333, 375
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	5 cut(s)	164, 281, 311, 437, 743
HpaII	CCGG	3 cut(s)	387, 413, 833
HphI	GGTGA	2 cut(s)	266, 847
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	3 cut(s)	245, 672, 786
Hpy188III	TCNNGA	3 cut(s)	209, 536, 818
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	74, 215
HpyCH4III	ACNGT	2 cut(s)	614, 732
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	653, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	378, 636, 695
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	473, 485, 665
HspAI	GCGC	5 cut(s)	24, 26, 70, 333, 375
KasI	GGCGCC	1 cut(s)	332
KpnI	GGTACC	1 cut(s)	831
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	291, 664, 820
LguI	GCTCTTC	1 cut(s)	511
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	2 cut(s)	8, 637
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	293, 666, 822
MbiI	CCGCTC	1 cut(s)	581
MboI	GATC	3 cut(s)	291, 664, 820
MboII	GAAGA	4 cut(s)	46, 290, 528, 608
MhlI	GDGCHC	1 cut(s)	737
MlsI	TGGCCA	2 cut(s)	401, 575
MluCI	AATT	4 cut(s)	597, 678, 699, 705
MluNI	TGGCCA	2 cut(s)	401, 575
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	4 cut(s)	158, 275, 305, 446
MnlI	CCTC	9 cut(s)	151, 154, 250, 261, 346, 506, 630, 678, 825
Mox20I	TGGCCA	2 cut(s)	401, 575
MscI	TGGCCA	2 cut(s)	401, 575
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	730
Msp20I	TGGCCA	2 cut(s)	401, 575
MspA1I	CMGCKG	2 cut(s)	21, 239
MspI	CCGG	3 cut(s)	387, 413, 833
MspR9I	CCNGG	5 cut(s)	387, 388, 413, 825, 833
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	5 cut(s)	26, 70, 239, 377, 630
MwoI	GCNNNNNNNGC	3 cut(s)	378, 636, 695
NarI	GGCGCC	1 cut(s)	333
NciI	CCSGG	4 cut(s)	387, 388, 413, 833
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	3 cut(s)	291, 664, 820
NlaIII	CATG	3 cut(s)	473, 485, 665
NlaIV	GGNNCC	3 cut(s)	218, 334, 829
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	473
NspV	TTCGAA	1 cut(s)	153
OliI	CACNNNNGTG	1 cut(s)	730
PaeI	GCATGC	1 cut(s)	473
PauI	GCGCGC	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	511
PctI	GAATGC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	743
PkrI	GCNGC	4 cut(s)	20, 23, 374, 652
PleI	GAGTC	4 cut(s)	158, 275, 305, 445
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	4 cut(s)	158, 275, 305, 445
PshAI	GACNNNNGTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	3 cut(s)	218, 334, 829
PspPI	GGNCC	2 cut(s)	379, 658
PteI	GCGCGC	1 cut(s)	24
RsaI	GTAC	2 cut(s)	829, 843
RsaNI	GTAC	2 cut(s)	828, 842
RseI	CAYNNNNRTG	1 cut(s)	730
SacII	CCGCGG	1 cut(s)	240
SalI	GTCGAC	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	4 cut(s)	19, 22, 373, 651
Sau3AI	GATC	3 cut(s)	291, 664, 820
Sau96I	GGNCC	2 cut(s)	379, 658
SchI	GAGTC	4 cut(s)	158, 275, 305, 446
ScrFI	CCNGG	5 cut(s)	387, 388, 413, 825, 833
SduI	GDGCHC	1 cut(s)	737
SetI	ASST	5 cut(s)	66, 198, 261, 652, 829
SfoI	GGCGCC	1 cut(s)	334
Sfr303I	CCGCGG	1 cut(s)	240
SfuI	TTCGAA	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	240
SmaI	CCCGGG	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	730
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	4 cut(s)	597, 678, 699, 705
SspDI	GGCGCC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	5 cut(s)	385, 386, 411, 823, 831
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	614, 732
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	153, 198, 210, 494
TasI	AATT	4 cut(s)	597, 678, 699, 705
TauI	GCSGC	2 cut(s)	21, 375
TfiI	GAWTC	1 cut(s)	743
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	2 cut(s)	576, 744
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	21, 650
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	242, 458
TspMI	CCCGGG	1 cut(s)	386
TspRI	CASTG	2 cut(s)	576, 744
XapI	RAATTY	2 cut(s)	597, 705
XceI	RCATGY	1 cut(s)	473
XmaI	CCCGGG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.