Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008341

Physical Location & Seq

Genomic Coordinates Forward (+)

18109643 .. 18110411

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTCGTTAGCCGTTGCGCAGTTCAATTCTCTTTGGGGACTTTCTTCAAACACCTTCCGGTATCAAATCCGGCGACGCTCTGTCCGTACAGATTCAGACCCAAAACCCTAACCGCCGCTACAATTCGTAGCTCCTCCTCTTACTTTGAGACTTTAGATTCCCGCCAAAAAGAGCAAGTCCATCTCTATGTCGACACTCTTCTCCAATGGAACCAGAAAATGAATCTTACAGCTGTGAAGGAGGCGGATGAGGTAATGGAGAGGCACATTGAGGACTCGCTTGCAATCATACCGCCTATTAGAAATTCTTATCTCTCTCACCGTAGCCCTTCGTCCGAAAACCTCCGCCTTGTAGATGTGGGGAGCGGTGCGGGTCTTCCGGGTTTGATCTTAGCCATTGCTTGCCCAGGTAGGGAAGTGACACTGATGGAGTCTATGTACAAGAGATGCATTTTCTTGGAACACGTTGTCGGTCACATTGGTTTGTCGAATGTTCAAGTGGTAAGAGGAAGAGCAGAGGTATTGTTTCGTGTTTTTCGTAGATATAATTTTGTTTCTAGAGATGTCAAATTAAGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GidB

Protein Analysis

194

Amino Acids

21.97

Weight (kDa)

9.6

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50110 AT5G50110
fragaria_vesca	FvH4_5g16400 FvH4_5g16400 FvH4_5g16400
malus_domestica	MD06G1181000.v1.1 MD13G1183500.v1.1 MD14G1186100.v1.1
prunus_persica	Prupe.5G179000_v2.0.a1
pyrus_communis	pycom06g16010 pycom14g15490
rosa_chinensis	RchiOBHm_Chr7g0179701
rosa_laevigata	RLG00000005329
rosa_multiflora	Rmu_sc0004156.1_g000001 Rmu_sc0005329.1_g000036
rosa_roxburghii	Rroxscaffold_155G00443800 Rroxscaffold_3G00273540
rosa_rugosa	Rorug06G0427500
rosa_samantha	Rh7AG026900 Rh7BG026000 Rh7CG028000 Rh7DG027600
rosa_wichuraiana	Rw7G002160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	8 cut(s)	114, 117, 163, 245, 293, 346, 366, 371
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	2 cut(s)	89, 440
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	26, 49, 497
AhdI	GACNNNNNGTC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	2 cut(s)	132, 233
AluI	AGCT	2 cut(s)	132, 233
Alw26I	GTCTC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	368
BccI	CCATC	2 cut(s)	189, 421
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	558
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	381, 408
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	381, 408
BmsI	GCATC	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	396
BseRI	GAGGAG	2 cut(s)	124, 127
BsiSI	CCGG	3 cut(s)	59, 71, 380
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	52
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	8 cut(s)	114, 117, 163, 245, 293, 346, 366, 371
BspLI	GGNNCC	1 cut(s)	212
BspQI	GCTCTTC	1 cut(s)	505
BsrBI	CCGCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	396
BsrGI	TGTACA	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	204, 505
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	282, 403
BstDEI	CTNAG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	2 cut(s)	379, 406
BstV2I	GAAGAC	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	282, 403
CfoI	GCGC	1 cut(s)	20
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	88, 439
CviJI	RGCY	5 cut(s)	12, 132, 233, 327, 395
CviKI_1	RGCY	5 cut(s)	12, 132, 233, 327, 395
CviQI	GTAC	2 cut(s)	88, 439
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
DriI	GACNNNNNGTC	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	204, 505
Eam1105I	GACNNNNNGTC	1 cut(s)	81
EarI	CTCTTC	2 cut(s)	204, 505
EciI	GGCGGA	2 cut(s)	260, 335
EcoRII	CCWGG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	452
FaiI	YATR	5 cut(s)	189, 290, 437, 546, 580
FaqI	GGGAC	1 cut(s)	52
FauI	CCCGC	2 cut(s)	170, 364
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	558
FspI	TGCGCA	1 cut(s)	19
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	117
HapII	CCGG	3 cut(s)	59, 71, 380
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	5 cut(s)	93, 158, 223, 275, 431
HpaII	CCGG	3 cut(s)	59, 71, 380
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	98, 337
Hpy188III	TCNNGA	1 cut(s)	558
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	65, 232, 339
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	2 cut(s)	284, 450
HpyF3I	CTNAG	1 cut(s)	391
HpySE526I	ACGT	1 cut(s)	465
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	387
LguI	GCTCTTC	1 cut(s)	505
LmnI	GCTCC	2 cut(s)	137, 363
LpnPI	CCDG	6 cut(s)	72, 84, 227, 393, 393, 420
LweI	GCATC	1 cut(s)	437
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	418, 473
MalI	GATC	1 cut(s)	389
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	1 cut(s)	387
MboII	GAAGA	4 cut(s)	37, 191, 368, 522
MluCI	AATT	5 cut(s)	26, 123, 304, 547, 569
MlyI	GAGTC	2 cut(s)	269, 440
MnlI	CCTC	9 cut(s)	145, 148, 235, 244, 255, 265, 353, 500, 511
Mph1103I	ATGCAT	1 cut(s)	452
MseI	TTAA	1 cut(s)	572
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	3 cut(s)	59, 71, 380
MspR9I	CCNGG	2 cut(s)	381, 408
MvaI	CCWGG	1 cut(s)	408
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	1 cut(s)	387
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	2 cut(s)	418, 473
NsbI	TGCGCA	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 535
PfeI	GAWTC	3 cut(s)	93, 158, 223
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	269, 439
PpsI	GAGTC	2 cut(s)	269, 439
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	89, 440
RsaNI	GTAC	2 cut(s)	88, 439
RseI	CAYNNNNRTG	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	387
SchI	GAGTC	2 cut(s)	269, 440
ScrFI	CCNGG	2 cut(s)	381, 408
SetI	ASST	8 cut(s)	57, 134, 235, 255, 345, 412, 468, 522
SfaNI	GCATC	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	5 cut(s)	26, 123, 304, 547, 569
SsiI	CCGC	8 cut(s)	114, 117, 163, 245, 293, 346, 366, 371
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	2 cut(s)	379, 406
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	2 cut(s)	192, 488
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	5 cut(s)	26, 123, 304, 547, 569
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	93, 158, 223
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	418, 473
Tsp45I	GTSAC	2 cut(s)	418, 473
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	429
XapI	RAATTY	1 cut(s)	304
XbaI	TCTAGA	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	558
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.