Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007396

Physical Location & Seq

Genomic Coordinates Reverse (-)

23330700 .. 23331798

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACAAGGAAAGAGATAGAGGATCCAACAGAAATAGAAATTGAGCTCAAGCGAAGGCTTGCTCAGATGACTGACCATTTGATTCATAAACAAGCCCAGGTTGAGGCTCTCTCCTCCGAGAAGGCAACTCTTCTGTTCAGAATTGAGGCTGTCTCGAGGTCACTAGACGAAAGCAAGTCATTGACCGAATTTTCCGCTGCCTCGTCAAGGGACATAGAATCGGGCAGACCTTTATTCGAAGACAGAATCCGGTCGGGCAGGAAACACCTGGGTTCAGCACTTCAGCAATTGGAGTCCATATTCTTGGCCGGAGTAGTGTTTTTGAGGAGGAATCCGACTGCGAAAATATGGGCCACGATTTACTTCGTGTGCCTTCATTTGTGGGTTATTTACATTCTAATGTCCCGTTCTCAAGCTTCAAATGAGATGAAATCCGGGGCTGTCATATCCTTGGAAAGCATTAACAACACTGCTGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000301 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031090 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0071840 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Golgin_A5

Protein Analysis

161

Amino Acids

18.08

Weight (kDa)

7.92

Isoelectric Point (pI)

74.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Golgin_A5	PF09787	12 - 134	5.7e-17	Golgin subfamily A member 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18190
fragaria_vesca	FvH4_5g17221 FvH4_5g17221 FvH4_5g17221 FvH4_5g17221 FvH4_5g17221
malus_domestica	MD06G1230800.v1.1 MD14G1235400.v1.1
prunus_persica	Prupe.5G232100_v2.0.a1 Prupe.7G033500_v2.0.a1
pyrus_communis	pycom06g20200
rosa_chinensis	RchiOBHm_Chr7g0178571
rosa_laevigata	RLG00000005436 RLG00000013860
rosa_multiflora	Rmu_co8125946.1_g000001 Rmu_sc0012505.1_g000003 Rmu_sc0021447.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274800
rosa_rugosa	Rorug06G0418000
rosa_samantha	Rh5AG530000 Rh7AG016700 Rh7BG016200 Rh7CG016900 Rh7DG016800
rosa_wichuraiana	Rw7G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	17, 30
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	103, 207
AgsI	TTSAA	1 cut(s)	420
AjnI	CCWGG	2 cut(s)	96, 267
AluBI	AGCT	2 cut(s)	46, 416
AluI	AGCT	2 cut(s)	46, 416
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	17, 30
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	306, 351
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	188
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	436
AsuII	TTCGAA	1 cut(s)	237
AvaI	CYCGRG	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	98, 269
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	98, 269, 436
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	3 cut(s)	98, 269, 436
BpiI	GAAGAC	1 cut(s)	246
BplI	GAGNNNNNCTC	4 cut(s)	95, 127, 137, 169
Bpu14I	TTCGAA	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	32, 396
BpuMI	CCSGG	1 cut(s)	436
BsaJI	CCNNGG	4 cut(s)	96, 268, 435, 450
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 207
BseBI	CCWGG	2 cut(s)	98, 269
BseDI	CCNNGG	4 cut(s)	96, 268, 435, 450
BseLI	CCNNNNNNNGG	2 cut(s)	103, 207
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	103, 340
BseXI	GCAGC	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	308, 353
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	3 cut(s)	250, 309, 435
BslFI	GGGAC	2 cut(s)	224, 388
BslI	CCNNNNNNNGG	2 cut(s)	103, 207
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	224, 388
BsnI	GGCC	2 cut(s)	308, 353
BsoBI	CYCGRG	1 cut(s)	154
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	308, 353
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	2 cut(s)	17, 30
BspT104I	TTCGAA	1 cut(s)	237
BssECI	CCNNGG	4 cut(s)	96, 268, 435, 450
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	98, 269
Bst6I	CTCTTC	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	63
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	22
BstMCI	CGRYCG	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	98, 269
BstSCI	CCNGG	3 cut(s)	96, 267, 434
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	308, 353
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	351
CviJI	RGCY	9 cut(s)	46, 58, 95, 107, 149, 308, 353, 416, 440
CviKI_1	RGCY	9 cut(s)	46, 58, 95, 107, 149, 308, 353, 416, 440
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	96, 267
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	450
FaiI	YATR	6 cut(s)	87, 215, 299, 349, 446, 481
FaqI	GGGAC	2 cut(s)	224, 388
Fnu4HI	GCNGC	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	308, 353
HapII	CCGG	3 cut(s)	250, 309, 435
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	5 cut(s)	82, 218, 246, 293, 331
HpaII	CCGG	3 cut(s)	250, 309, 435
Hpy188I	TCNGA	4 cut(s)	66, 118, 140, 336
Hpy188III	TCNNGA	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	48, 115, 383
HpyF3I	CTNAG	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	22
LpnPI	CCDG	9 cut(s)	83, 110, 244, 254, 263, 281, 322, 448, 459
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	122, 251
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	4 cut(s)	39, 141, 188, 287
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	50, 359
MnlI	CCTC	8 cut(s)	13, 97, 124, 139, 150, 211, 318, 321
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	250, 309, 435
MspR9I	CCNGG	3 cut(s)	98, 269, 436
MunI	CAATTG	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	98, 269
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	237
PaeR7I	CTCGAG	1 cut(s)	154
PfeI	GAWTC	4 cut(s)	82, 218, 246, 331
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	96, 267
PspGI	CCWGG	2 cut(s)	96, 267
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	98, 269, 436
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	48, 102, 161, 232, 270, 418
Sfr274I	CTCGAG	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	3 cut(s)	47, 154, 411
SmoI	CTYRAG	3 cut(s)	47, 154, 411
Sse9I	AATT	4 cut(s)	39, 141, 188, 287
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	96, 267, 434
StyI	CCWWGG	1 cut(s)	450
TaqI	TCGA	2 cut(s)	155, 237
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	4 cut(s)	39, 141, 188, 287
TfiI	GAWTC	4 cut(s)	82, 218, 246, 331
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	3 cut(s)	74, 365, 443
TspRI	CASTG	1 cut(s)	475
XagI	CCTNNNNNAGG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	188
XhoI	CTCGAG	1 cut(s)	154
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.