pycom06g20470

Probably involved in the biogenesis of the COX complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009259
Physical Location & Seq
Reverse (-)
23485293 .. 23487631
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1047 bp
ATGGCAGCAAAAACCTCCATTGCCAAAACCATAACCAAGCTTTATTATTCTAGCGGGTCCCATTCTTCTCACCGCAAACATCTGGCCCCACTCTCACTCTCTTCTTCCTTCTCCAGCTCCTCCCCTGCCGATGCTTCCTCAGCAGCCGAGTCTCAATCAACCATCTCTTCACAATCTCCAGAGAGGGAAAGGTCGAGATTGTCGAGATGGTTGCTGTTTCTTCCTGGAGCTATCACTTTTGGCCTTGGGACTTGGCAGATTATCAGAAGGCAAGAGAAGATAAAAATGTTAGATTATAGACGGAAGAGGTTGGAATTGGAACCTTTAAACTTGAGCAATGCCTCTCCGTCAAGTCAAGAATTGGATCAGTTGGAGTTTAGGAGGGTGAAATGCAAAGGTTATTTTGATGAGAAAAGGTCAATCTACGTGGGCCCTCGTTCAAGAAGCATTTCCGGCGTGACTGAAAACGGTTACTATATCATCACACCTCTTATCCCCATCCCTGAAAAACCGGAGAGTGTGCAGCCACCAATATTGGTCAACAGAGGATGGGTACCCCGAAGTTGGAAAGATGAGGCTTCAAAAGTTTCAAAAGATGGTGAACAGCCTTCTGATATAAAACCCTCGTCTGTCCAAGAGACTGAAAGAAGGTCTTGGTGGAGGTTGTGGAGCAAGAAGCCCGAAGTTGTTGAGGATAAGACCCCTGCTGTTGCTCCTGTGGAAGTCGTTGGAGTAGTTCGAGGGAGTGAAAAGCCTAGCATATTTGTTCCACCAAATGATCCAAACTCCGGTCAATGGTTCTACATTGATGTTCCAGCAATTGCTCGTAAGTGTGGACTCCCTGAGGATACTGTTTACATTGAAGACGCAAATGAAAATGTCAATCCAAGTAACCCTTACCCACTTCCAAAGGATGTCAGTACCTTGATTCGGAGTTCTGTCATGCCTCAGGACCATCTGAATTATACTTTGACATGGTATTCCCTCTCTGCAGCAGTTACATTCATGGCTTTCATGAGACTAAAACCGAAAAAGAGCCGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF1

Protein Analysis

349

Amino Acids

39.29

Weight (kDa)

9.6

Isoelectric Point (pI)

69.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF1 PF02104 74 - 331 4.9e-44 SURF1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 553
AccB1I GGYRCC 1 cut(s) 553
AciI CCGC 2 cut(s) 54, 73
AclWI GGATC 2 cut(s) 372, 773
AfaI GTAC 2 cut(s) 555, 922
AfiI CCNNNNNNNGG 4 cut(s) 564, 788, 795, 930
AgsI TTSAA 4 cut(s) 441, 582, 591, 863
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 3 cut(s) 40, 117, 230
AluI AGCT 3 cut(s) 40, 117, 230
Alw26I GTCTC 3 cut(s) 156, 632, 1012
AlwI GGATC 2 cut(s) 372, 773
AoxI GGCC 3 cut(s) 84, 241, 430
ApaI GGGCCC 1 cut(s) 434
ApeKI GCWGC 4 cut(s) 5, 143, 523, 992
Asp700I GAANNNNTTC 1 cut(s) 448
Asp718I GGTACC 1 cut(s) 553
AspS9I GGNCC 5 cut(s) 57, 85, 430, 431, 952
AsuHPI GGTGA 3 cut(s) 62, 397, 611
AvaII GGWCC 2 cut(s) 57, 952
AxyI CCTNAGG 2 cut(s) 843, 948
BaeGI GKGCMC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 553
BanII GRGCYC 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 870
BbvCI CCTCAGC 1 cut(s) 139
BbvI GCAGC 4 cut(s) 17, 155, 535, 1004
BccI CCATC 6 cut(s) 170, 201, 506, 543, 590, 963
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 1 cut(s) 841
BcoDI GTCTC 3 cut(s) 156, 632, 1012
BfaI CTAG 2 cut(s) 51, 756
BfmI CTRYAG 1 cut(s) 990
BfuI GTATCC 1 cut(s) 841
BisI GCNGC 4 cut(s) 6, 144, 524, 993
BlsI GCNGC 4 cut(s) 7, 145, 525, 994
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 2 cut(s) 57, 952
BmgT120I GGNCC 5 cut(s) 57, 85, 430, 431, 952
BmiI GGNNCC 6 cut(s) 58, 59, 87, 321, 432, 555
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 870
BpmI CTGGAG 3 cut(s) 97, 162, 246
Bpu10I CCTNAGC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 2 cut(s) 511, 788
Bsc4I CCNNNNNNNGG 4 cut(s) 564, 788, 795, 930
Bse21I CCTNAGG 2 cut(s) 843, 948
Bse3DI GCAATG 2 cut(s) 18, 343
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 3 cut(s) 498, 554, 919
BseLI CCNNNNNNNGG 4 cut(s) 564, 788, 795, 930
BseMI GCAATG 2 cut(s) 18, 343
BseMII CTCAG 3 cut(s) 153, 834, 962
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 4 cut(s) 17, 155, 535, 1004
BsgI GTGCAG 1 cut(s) 542
BshFI GGCC 3 cut(s) 86, 243, 432
BshNI GGYRCC 1 cut(s) 553
BsiSI CCGG 4 cut(s) 453, 512, 789, 1039
BslFI GGGAC 2 cut(s) 43, 262
BslI CCNNNNNNNGG 4 cut(s) 564, 788, 795, 930
BsmAI GTCTC 3 cut(s) 156, 632, 1012
BsmFI GGGAC 2 cut(s) 43, 262
BsnI GGCC 3 cut(s) 86, 243, 432
Bsp120I GGGCCC 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 2 cut(s) 364, 778
BspACI CCGC 2 cut(s) 54, 73
BspANI GGCC 3 cut(s) 86, 243, 432
BspCNI CTCAG 3 cut(s) 152, 835, 961
BspHI TCATGA 1 cut(s) 1014
BspLI GGNNCC 6 cut(s) 58, 59, 87, 321, 432, 555
BspMAI CTGCAG 1 cut(s) 994
BspPI GGATC 2 cut(s) 372, 773
BspT107I GGYRCC 1 cut(s) 553
BsrDI GCAATG 2 cut(s) 18, 343
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 2 cut(s) 364, 778
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 470, 853
Bst6I CTCTTC 3 cut(s) 106, 172, 299
BstBAI YACGTR 1 cut(s) 427
BstDEI CTNAG 3 cut(s) 139, 843, 948
BstF5I GGATG 3 cut(s) 498, 554, 919
BstKTI GATC 2 cut(s) 367, 781
BstMAI GTCTC 3 cut(s) 156, 632, 1012
BstMBI GATC 2 cut(s) 364, 778
BstMWI GCNNNNNNNGC 2 cut(s) 140, 453
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 990
BstSLI GKGCMC 1 cut(s) 434
BstV1I GCAGC 4 cut(s) 17, 155, 535, 1004
BstV2I GAAGAC 1 cut(s) 870
Bsu36I CCTNAGG 2 cut(s) 843, 948
BsuI GTATCC 1 cut(s) 841
BsuRI GGCC 3 cut(s) 86, 243, 432
BtsCI GGATG 3 cut(s) 498, 554, 919
CciI TCATGA 1 cut(s) 1014
Cfr13I GGNCC 5 cut(s) 57, 85, 430, 431, 952
CseI GACGC 1 cut(s) 875
Csp6I GTAC 2 cut(s) 554, 921
CspCI CAANNNNNGTGG 4 cut(s) 408, 443, 516, 551
CviAII CATG 4 cut(s) 943, 975, 1006, 1015
CviQI GTAC 2 cut(s) 554, 921
DdeI CTNAG 3 cut(s) 139, 843, 948
DpnI GATC 2 cut(s) 366, 780
DpnII GATC 2 cut(s) 364, 778
DraI TTTAAA 1 cut(s) 327
Eam1104I CTCTTC 3 cut(s) 106, 172, 299
EarI CTCTTC 3 cut(s) 106, 172, 299
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 57, 952
Eco81I CCTNAGG 2 cut(s) 843, 948
EcoO109I RGGNCCY 2 cut(s) 57, 431
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 946, 978, 1009, 1018
FalI AAGNNNNNCTT 4 cut(s) 637, 669, 880, 912
FaqI GGGAC 2 cut(s) 43, 262
FatI CATG 4 cut(s) 942, 974, 1005, 1014
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 4 cut(s) 6, 144, 524, 993
FokI GGATG 3 cut(s) 485, 561, 926
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 4 cut(s) 6, 144, 524, 993
FspBI CTAG 2 cut(s) 51, 756
GluI GCNGC 4 cut(s) 6, 144, 524, 993
GsuI CTGGAG 3 cut(s) 97, 162, 246
HaeIII GGCC 3 cut(s) 86, 243, 432
HapII CCGG 4 cut(s) 453, 512, 789, 1039
HgaI GACGC 1 cut(s) 875
Hin1II CATG 4 cut(s) 946, 978, 1009, 1018
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 3 cut(s) 149, 837, 928
HpaII CCGG 4 cut(s) 453, 512, 789, 1039
HphI GGTGA 3 cut(s) 62, 397, 611
Hpy166II GTNNAC 4 cut(s) 541, 602, 836, 856
Hpy188I TCNGA 4 cut(s) 266, 613, 933, 960
Hpy188III TCNNGA 7 cut(s) 179, 195, 204, 356, 441, 950, 1015
Hpy8I GTNNAC 4 cut(s) 541, 602, 836, 856
HpyAV CCTTC 4 cut(s) 118, 261, 618, 642
HpyCH4III ACNGT 2 cut(s) 470, 853
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 3 cut(s) 393, 523, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 453
HpyF3I CTNAG 3 cut(s) 139, 843, 948
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 4 cut(s) 946, 978, 1009, 1018
KflI GGGWCCC 1 cut(s) 57
KpnI GGTACC 1 cut(s) 557
Kzo9I GATC 2 cut(s) 364, 778
LmnI GCTCC 4 cut(s) 122, 227, 669, 718
Lsp1109I GCAGC 4 cut(s) 17, 155, 535, 1004
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 51, 756
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 4 cut(s) 457, 470, 890, 997
MalI GATC 2 cut(s) 366, 780
MboI GATC 2 cut(s) 364, 778
MboII GAAGA 8 cut(s) 57, 93, 96, 159, 212, 289, 316, 875
MfeI CAATTG 1 cut(s) 819
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 4 cut(s) 314, 359, 819, 961
MlyI GAGTC 2 cut(s) 158, 831
MmeI TCCRAC 4 cut(s) 291, 351, 545, 709
MroXI GAANNNNTTC 1 cut(s) 448
MseI TTAA 1 cut(s) 326
MspI CCGG 4 cut(s) 453, 512, 789, 1039
MspR9I CCNGG 1 cut(s) 225
MunI CAATTG 1 cut(s) 819
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 140, 453
NdeII GATC 2 cut(s) 364, 778
NlaIII CATG 4 cut(s) 946, 978, 1009, 1018
NlaIV GGNNCC 6 cut(s) 58, 59, 87, 321, 432, 555
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 457
PagI TCATGA 1 cut(s) 1014
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 928
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 4 cut(s) 7, 145, 525, 994
PleI GAGTC 2 cut(s) 157, 831
PpsI GAGTC 2 cut(s) 157, 831
Ppu21I YACGTR 1 cut(s) 427
PpuMI RGGWCCY 1 cut(s) 57
Psp5II RGGWCCY 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 6 cut(s) 58, 59, 87, 321, 432, 555
PspOMI GGGCCC 1 cut(s) 430
PspPI GGNCC 5 cut(s) 57, 85, 430, 431, 952
PspPPI RGGWCCY 1 cut(s) 57
PstI CTGCAG 1 cut(s) 994
RsaI GTAC 2 cut(s) 555, 922
RsaNI GTAC 2 cut(s) 554, 921
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 4 cut(s) 6, 144, 524, 993
Sau3AI GATC 2 cut(s) 364, 778
Sau96I GGNCC 5 cut(s) 57, 85, 430, 431, 952
SchI GAGTC 2 cut(s) 158, 831
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 434
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 990
SinI GGWCC 2 cut(s) 57, 952
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 4 cut(s) 314, 359, 819, 961
SsiI CCGC 2 cut(s) 54, 73
SspI AATATT 1 cut(s) 534
SspMI CTAG 2 cut(s) 51, 756
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 470, 853
TaiI ACGT 1 cut(s) 429
TaqI TCGA 3 cut(s) 194, 203, 739
TasI AATT 4 cut(s) 314, 359, 819, 961
TfiI GAWTC 1 cut(s) 928
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 4 cut(s) 5, 143, 523, 992
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 3 cut(s) 888, 994, 1003
TspGWI ACGGA 2 cut(s) 316, 336
VpaK11BI GGWCC 2 cut(s) 57, 952
XmnI GAANNNNTTC 1 cut(s) 448
XspI CTAG 2 cut(s) 51, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.