Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010992

Physical Location & Seq

Genomic Coordinates Reverse (-)

23926437 .. 23927350

Gene Structure 914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCAACGACCGTTGTTATCCTGAGGAGCCCTGCAAATCCATGGCCTTCCAGTTCGAGCAACAGACTCAAACAACAGAAGACATCTTCTCAGGTGGTCGGCGGCTGCTGCACCATCACTTTCACCTCCTCAATTGCCTGCCGTGCTTGGCGGAATAAGCAGTCCCTATCCTCCTCTCCCACACACAAAAACCGCACCTTCTCGCCATCGGCGTCTCTTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCACCTCCACCTCCACCAAGCTCTACGTCAGCGGGCTTTCGTTTCGTACCACTGAAGAGAGCTTACGAAATGCTTTCCAAAATTTTGGACAACTTGTAGAAGTCAATTTGGTGATGGATAGAATTGCAAATAGGCCAAGAGGCTTTGCTTTTCTCCGCTATGAAACTGAAGAGCAATCTCAAAAGGCTATCGAGGGAATGCACGGAAAGGTACGTGCTGCCCAGGAGGCTCCATTTTTCCTTTTCGAAAAGAAGATAAATAATTATGGAAGAAATTACACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

182

Amino Acids

19.9

Weight (kDa)

10.2

Isoelectric Point (pI)

81.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	94 - 157	4.1e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73530
fragaria_vesca	FvH4_5g18110 FvH4_5g18110
malus_domestica	MD06G1236600.v1.1
prunus_persica	Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1
pyrus_communis	pycom06g21230
rosa_chinensis	RchiOBHm_Chr7g0177501
rosa_laevigata	RLG00000005532
rosa_multiflora	Rmu_sc0005176.1_g000001 Rmu_sc0028619.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275820
rosa_rugosa	Rorug06G0406600 Rorug06G0406700
rosa_samantha	Rh7AG006100 Rh7BG006000 Rh7CG006400 Rh7DG005900
rosa_wichuraiana	Rw7G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	102, 151, 193, 291, 415
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	2 cut(s)	333, 447
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	2 cut(s)	307, 471
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	2 cut(s)	280, 321
AluI	AGCT	2 cut(s)	280, 321
Alw26I	GTCTC	1 cut(s)	219
AoxI	GGCC	2 cut(s)	44, 392
ApeKI	GCWGC	3 cut(s)	105, 108, 476
ApoI	RAATTY	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	115, 382
AsuII	TTCGAA	1 cut(s)	504
AxyI	CCTNAGG	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	92, 95, 463
BccI	CCATC	3 cut(s)	122, 214, 367
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	485
BisI	GCNGC	4 cut(s)	103, 106, 109, 477
BlsI	GCNGC	4 cut(s)	104, 107, 110, 478
Bme1390I	CCNGG	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	29, 489
BmrFI	CCNGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	504
BsaAI	YACGTR	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	41, 480
Bse1I	ACTGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	41, 480
BseMII	CTCAG	2 cut(s)	14, 104
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	3 cut(s)	40, 118, 163
BseXI	GCAGC	3 cut(s)	92, 95, 463
BsgI	GTGCAG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	46, 394
BsiEI	CGRYCG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	46, 394
Bsp119I	TTCGAA	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	5 cut(s)	102, 151, 193, 291, 415
BspANI	GGCC	2 cut(s)	46, 394
BspCNI	CTCAG	2 cut(s)	15, 103
BspLI	GGNNCC	2 cut(s)	29, 489
BspQI	GCTCTTC	1 cut(s)	423
BspT104I	TTCGAA	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	41, 480
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	309, 423
BstACI	GRCGYC	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	139, 293
BstDEI	CTNAG	2 cut(s)	23, 90
BstDSI	CCRYGG	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	219
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 143, 157, 485
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	92, 95, 463
BstV2I	GAAGAC	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	344
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	46, 394
BtgI	CCRYGG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	2 cut(s)	309, 537
Cac8I	GCNNGC	2 cut(s)	139, 293
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	306, 470
CviAII	CATG	1 cut(s)	42
CviQI	GTAC	2 cut(s)	306, 470
DdeI	CTNAG	2 cut(s)	23, 90
Eam1104I	CTCTTC	2 cut(s)	309, 423
EarI	CTCTTC	2 cut(s)	309, 423
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	32
Eco57I	CTGAAG	2 cut(s)	333, 447
Eco81I	CCTNAGG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	1 cut(s)	45
FaiI	YATR	3 cut(s)	43, 420, 525
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	41
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	4 cut(s)	103, 106, 109, 477
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	4 cut(s)	103, 106, 109, 477
GluI	GCNGC	4 cut(s)	103, 106, 109, 477
HaeIII	GGCC	2 cut(s)	46, 394
HgaI	GACGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	45
HinfI	GANTC	1 cut(s)	66
HphI	GGTGA	2 cut(s)	115, 382
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	57, 208, 234
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	2 cut(s)	285, 472
HpyCH4V	TGCA	4 cut(s)	35, 111, 386, 460
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 143, 157, 485
HpyF3I	CTNAG	2 cut(s)	23, 90
HpySE526I	ACGT	2 cut(s)	285, 472
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	45
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	2 cut(s)	27, 493
LpnPI	CCDG	7 cut(s)	35, 45, 64, 77, 151, 467, 494
Lsp1109I	GCAGC	3 cut(s)	92, 95, 463
MaeII	ACGT	2 cut(s)	285, 472
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	6 cut(s)	132, 340, 364, 381, 520, 532
MlyI	GAGTC	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	482
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	4 cut(s)	108, 143, 157, 485
NcoI	CCATGG	1 cut(s)	41
NlaIII	CATG	1 cut(s)	45
NlaIV	GGNNCC	2 cut(s)	29, 489
NspV	TTCGAA	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	1 cut(s)	462
PkrI	GCNGC	4 cut(s)	104, 107, 110, 478
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	2 cut(s)	29, 489
RsaI	GTAC	2 cut(s)	307, 471
RsaNI	GTAC	2 cut(s)	306, 470
SapI	GCTCTTC	1 cut(s)	423
SatI	GCNGC	4 cut(s)	103, 106, 109, 477
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	32
SfuI	TTCGAA	1 cut(s)	504
Sse9I	AATT	6 cut(s)	132, 340, 364, 381, 520, 532
SsiI	CCGC	5 cut(s)	102, 151, 193, 291, 415
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	2 cut(s)	288, 475
TaqI	TCGA	3 cut(s)	56, 450, 504
TasI	AATT	6 cut(s)	132, 340, 364, 381, 520, 532
TauI	GCSGC	1 cut(s)	105
TscAI	CASTG	2 cut(s)	316, 544
TseI	GCWGC	3 cut(s)	105, 108, 476
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	316, 544
XapI	RAATTY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.