pycom07g00880

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
753889 .. 759906
6018 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g00880.2

Sequence Viewer

Length: 1167 bp
ATGTTTTGCAATATTGCTAGCTCTCTCAGCACGAAGAACAATAAGCGCAAAGAAATTATCAACTTAAGCATGGCTGAGGAGCAACATTTGCATGAGCCAGTGAGCAAGTGGAAGATGCCTGTTGGTGTTTTCTTCAAAGATGCAAGGCGTGTTTTCAAATGGGATACACTCGGGAAGGAGATACTACAGATTGCATTCCCTGCTGCTCTCGCTGTAGCTGCTGATCCAGTTGCTTCTTTGATTGACACAGCATTCATTGGTCATATAGGTCCAGTGGAGCTTGCGGCAGCAGGAGTATCTATTGCCCTGTTCAACCAGGCTTCAAGGATTACTATATTCCCATTAGTCAGTATAACAACTTCCTTTGTTGCCGAGGAAGATACTATTGCAAAAATGAACACGGAATCTGCAAAAGGTGAGAAGCGGGAAAAGAATTCAGACACACTTGATGACATGGAAAAAGGGGCTGCCAAACCAGAAGGAGATGATGCACCTCAAAATGGTAAGCATCTAGGAAAATTTTCAACTCAAAACAGTAGGGTGGAAAAGGCCTCAACTGATGATATTGAGCGTGTGGAAGCGGAAAAAGGTGCCGCTGAAGCGGAAAGTGAGAGATCCGACGAGGGATTAGCCAAAGATATTGAATCAAAAAAAGTCATATTGGAAAATGTTAAGCTTGAGAATGCAGAGAAAGATGCTGCTAAAAACAGTGTTCAACTAGAAAATGGTTCCAAAACCACTATGGAAAAGCGTCCTTCGGATCTTATGAACATCAGTGTGAAGACGAAAATCAGGAAAAAGAAGCGACATATTGCTTCAGCGTCAACAGCCCTCATCTTTGGGGCAATATTAGGCCTTTTTCAAGCTATATTTCTCATGCTTACAGCCAAAGTTCTCCTTGGTGTGATGGGTGTGAAACCGGGTTCCCCTATGTTAGCCCCGGCACAGAAATACTTGAGAATAAGGTCGATTGGTGCACCAGCAGTTCTTCTCACATTGGCCATGCAAGGGATCTTCCGTGGCTTTAAGGATACAAAAACTCCTTTATATGTCATTGTTGCTGGATACGCAGTTAACATTGCCCTGGATCCATTACTCATCTTTGTCTGCGGTATGGGAATCAGAGGTGCAGCTATGGCACATGTTATTTCTCAATTTGGTACTTGA

Protein Analysis

389

Amino Acids

41.96

Weight (kDa)

9.05

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 590
AciI CCGC 6 cut(s) 284, 424, 581, 594, 602, 1110
AclWI GGATC 6 cut(s) 218, 609, 768, 1019, 1082, 1095
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 2 cut(s) 433, 518
AcuI CTGAAG 2 cut(s) 618, 801
AfaI GTAC 1 cut(s) 1162
AfiI CCNNNNNNNGG 2 cut(s) 500, 1008
AflII CTTAAG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 1141
AgsI TTSAA 8 cut(s) 136, 157, 313, 324, 525, 644, 716, 863
AjnI CCWGG 2 cut(s) 315, 1083
AluBI AGCT 6 cut(s) 21, 218, 280, 676, 866, 1133
AluI AGCT 6 cut(s) 21, 218, 280, 676, 866, 1133
Alw21I GWGCWC 1 cut(s) 979
Alw44I GTGCAC 1 cut(s) 975
AlwI GGATC 6 cut(s) 218, 609, 768, 1019, 1082, 1095
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 3 cut(s) 549, 853, 999
ApaLI GTGCAC 1 cut(s) 975
ApeKI GCWGC 6 cut(s) 203, 218, 287, 467, 698, 1130
ApoI RAATTY 2 cut(s) 433, 518
Asp700I GAANNNNTTC 1 cut(s) 520
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 2 cut(s) 921, 941
AsuHPI GGTGA 1 cut(s) 428
AsuNHI GCTAGC 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 979
BalI TGGCCA 1 cut(s) 1001
BamHI GGATCC 1 cut(s) 1087
BanI GGYRCC 1 cut(s) 590
BarI GAAGNNNNNNTAC 2 cut(s) 343, 375
BbsI GAAGAC 1 cut(s) 788
Bbv12I GWGCWC 1 cut(s) 979
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 6 cut(s) 190, 205, 299, 454, 685, 1142
BccI CCATC 1 cut(s) 901
BciT130I CCWGG 2 cut(s) 317, 1085
BciVI GTATCC 3 cut(s) 157, 1024, 1058
BcnI CCSGG 2 cut(s) 921, 941
BfaI CTAG 3 cut(s) 18, 512, 719
BfmI CTRYAG 2 cut(s) 185, 213
BfrI CTTAAG 1 cut(s) 64
BfuI GTATCC 3 cut(s) 157, 1024, 1058
BisI GCNGC 8 cut(s) 204, 219, 285, 288, 468, 594, 699, 1131
BlsI GCNGC 8 cut(s) 205, 220, 286, 289, 469, 595, 700, 1132
Bme1390I CCNGG 4 cut(s) 317, 921, 941, 1085
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 4 cut(s) 592, 730, 925, 1089
BmrFI CCNGG 4 cut(s) 317, 921, 941, 1085
BmsI GCATC 5 cut(s) 105, 130, 478, 517, 685
BmtI GCTAGC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 698, 976
BpuMI CCSGG 2 cut(s) 921, 941
BsaJI CCNNGG 5 cut(s) 372, 898, 939, 1018, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 1024, 1054
Bsc4I CCNNNNNNNGG 2 cut(s) 500, 1008
Bse1I ACTGG 3 cut(s) 98, 227, 272
Bse3DI GCAATG 1 cut(s) 1077
BseBI CCWGG 2 cut(s) 317, 1085
BseDI CCNNGG 5 cut(s) 372, 898, 939, 1018, 1083
BseLI CCNNNNNNNGG 2 cut(s) 500, 1008
BseMI GCAATG 1 cut(s) 1077
BseMII CTCAG 2 cut(s) 40, 66
BseNI ACTGG 3 cut(s) 98, 227, 272
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 6 cut(s) 190, 205, 299, 454, 685, 1142
BsgI GTGCAG 1 cut(s) 1149
BshFI GGCC 3 cut(s) 551, 855, 1001
BshNI GGYRCC 1 cut(s) 590
BsiHKAI GWGCWC 1 cut(s) 979
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 2 cut(s) 920, 941
BslI CCNNNNNNNGG 2 cut(s) 500, 1008
BsmI GAATGC 3 cut(s) 194, 251, 688
BsnI GGCC 3 cut(s) 551, 855, 1001
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 979
Bsp143I GATC 5 cut(s) 223, 614, 760, 1011, 1087
BspACI CCGC 6 cut(s) 284, 424, 581, 594, 602, 1110
BspANI GGCC 3 cut(s) 551, 855, 1001
BspCNI CTCAG 2 cut(s) 39, 67
BspLI GGNNCC 4 cut(s) 592, 730, 925, 1089
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 6 cut(s) 218, 609, 768, 1019, 1082, 1095
BspT107I GGYRCC 1 cut(s) 590
BspTI CTTAAG 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 1077
BsrI ACTGG 3 cut(s) 98, 227, 272
BssECI CCNNGG 5 cut(s) 372, 898, 939, 1018, 1083
BssMI GATC 5 cut(s) 223, 614, 760, 1011, 1087
BssT1I CCWWGG 1 cut(s) 898
Bst2UI CCWGG 2 cut(s) 317, 1085
Bst4CI ACNGT 2 cut(s) 536, 710
BstAFI CTTAAG 1 cut(s) 64
BstAPI GCANNNNNTGC 2 cut(s) 88, 200
BstC8I GCNNGC 2 cut(s) 19, 282
BstDEI CTNAG 2 cut(s) 26, 75
BstDSI CCRYGG 1 cut(s) 1018
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 5 cut(s) 226, 617, 763, 1014, 1090
BstMBI GATC 5 cut(s) 223, 614, 760, 1011, 1087
BstMWI GCNNNNNNNGC 9 cut(s) 27, 88, 200, 209, 218, 599, 827, 1067, 1136
BstNI CCWGG 2 cut(s) 317, 1085
BstNSI RCATGY 1 cut(s) 1145
BstSCI CCNGG 4 cut(s) 315, 919, 939, 1083
BstSFI CTRYAG 2 cut(s) 185, 213
BstSLI GKGCMC 1 cut(s) 979
BstV1I GCAGC 6 cut(s) 190, 205, 299, 454, 685, 1142
BstV2I GAAGAC 1 cut(s) 788
BstX2I RGATCY 4 cut(s) 614, 760, 1011, 1087
BstYI RGATCY 4 cut(s) 614, 760, 1011, 1087
BsuI GTATCC 3 cut(s) 157, 1024, 1058
BsuRI GGCC 3 cut(s) 551, 855, 1001
BtgI CCRYGG 1 cut(s) 1018
BtsIMutI CAGTG 4 cut(s) 105, 279, 715, 781
Cac8I GCNNGC 2 cut(s) 19, 282
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 2 cut(s) 740, 810
Csp6I GTAC 1 cut(s) 1161
CviAII CATG 6 cut(s) 70, 92, 454, 877, 1003, 1142
CviQI GTAC 1 cut(s) 1161
DdeI CTNAG 2 cut(s) 26, 75
DpnI GATC 5 cut(s) 225, 616, 762, 1013, 1089
DpnII GATC 5 cut(s) 223, 614, 760, 1011, 1087
EaeI YGGCCR 1 cut(s) 999
Eco130I CCWWGG 1 cut(s) 898
Eco147I AGGCCT 2 cut(s) 551, 855
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 618, 801
Eco88I CYCGRG 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 315, 1083
EcoT14I CCWWGG 1 cut(s) 898
ErhI CCWWGG 1 cut(s) 898
FaeI CATG 6 cut(s) 73, 95, 457, 880, 1006, 1145
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FatI CATG 6 cut(s) 69, 91, 453, 876, 1002, 1141
FauI CCCGC 1 cut(s) 417
Fnu4HI GCNGC 8 cut(s) 204, 219, 285, 288, 468, 594, 699, 1131
Fsp4HI GCNGC 8 cut(s) 204, 219, 285, 288, 468, 594, 699, 1131
FspBI CTAG 3 cut(s) 18, 512, 719
GlaI GCGC 1 cut(s) 47
GluI GCNGC 8 cut(s) 204, 219, 285, 288, 468, 594, 699, 1131
HaeIII GGCC 3 cut(s) 551, 855, 1001
HapII CCGG 2 cut(s) 920, 941
HgaI GACGC 2 cut(s) 740, 810
HhaI GCGC 1 cut(s) 48
Hin1II CATG 6 cut(s) 73, 95, 457, 880, 1006, 1145
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 2 cut(s) 825, 1075
HindII GTYRAC 2 cut(s) 825, 1075
HindIII AAGCTT 1 cut(s) 674
HinfI GANTC 3 cut(s) 404, 644, 1119
HpaI GTTAAC 1 cut(s) 1075
HpaII CCGG 2 cut(s) 920, 941
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 3 cut(s) 825, 977, 1075
Hpy188I TCNGA 4 cut(s) 439, 619, 760, 1124
Hpy188III TCNNGA 2 cut(s) 172, 793
Hpy8I GTNNAC 3 cut(s) 825, 977, 1075
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 3 cut(s) 169, 473, 765
HpyCH4III ACNGT 2 cut(s) 536, 710
HpyF10VI GCNNNNNNNGC 9 cut(s) 27, 88, 200, 209, 218, 599, 827, 1067, 1136
HpyF3I CTNAG 2 cut(s) 26, 75
Hsp92II CATG 6 cut(s) 73, 95, 457, 880, 1006, 1145
HspAI GCGC 1 cut(s) 46
KspAI GTTAAC 1 cut(s) 1075
Kzo9I GATC 5 cut(s) 223, 614, 760, 1011, 1087
LmnI GCTCC 2 cut(s) 79, 277
Lsp1109I GCAGC 6 cut(s) 190, 205, 299, 454, 685, 1142
LweI GCATC 5 cut(s) 105, 130, 478, 517, 685
MaeI CTAG 3 cut(s) 18, 512, 719
MalI GATC 5 cut(s) 225, 616, 762, 1013, 1089
MboI GATC 5 cut(s) 223, 614, 760, 1011, 1087
MboII GAAGA 7 cut(s) 46, 124, 124, 389, 793, 980, 1006
MflI RGATCY 4 cut(s) 614, 760, 1011, 1087
MhlI GDGCHC 1 cut(s) 979
MlsI TGGCCA 1 cut(s) 1001
MluCI AATT 4 cut(s) 54, 433, 518, 1154
MluNI TGGCCA 1 cut(s) 1001
MmeI TCCRAC 1 cut(s) 642
MnlI CCTC 7 cut(s) 70, 367, 504, 562, 616, 842, 1118
Mox20I TGGCCA 1 cut(s) 1001
MroXI GAANNNNTTC 1 cut(s) 520
MscI TGGCCA 1 cut(s) 1001
MseI TTAA 4 cut(s) 65, 672, 1026, 1074
MslI CAYNNNNRTG 2 cut(s) 90, 776
Msp20I TGGCCA 1 cut(s) 1001
MspA1I CMGCKG 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 64
MspI CCGG 2 cut(s) 920, 941
MspR9I CCNGG 4 cut(s) 317, 921, 941, 1085
Mva1269I GAATGC 3 cut(s) 194, 251, 688
MvaI CCWGG 2 cut(s) 317, 1085
MwoI GCNNNNNNNGC 9 cut(s) 27, 88, 200, 209, 218, 599, 827, 1067, 1136
NciI CCSGG 2 cut(s) 921, 941
NdeII GATC 5 cut(s) 223, 614, 760, 1011, 1087
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 6 cut(s) 73, 95, 457, 880, 1006, 1145
NlaIV GGNNCC 4 cut(s) 592, 730, 925, 1089
NmeAIII GCCGAG 1 cut(s) 397
NspI RCATGY 1 cut(s) 1145
PceI AGGCCT 2 cut(s) 551, 855
PciI ACATGT 1 cut(s) 1141
PctI GAATGC 3 cut(s) 194, 251, 688
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 3 cut(s) 404, 644, 1119
PkrI GCNGC 8 cut(s) 205, 220, 286, 289, 469, 595, 700, 1132
PscI ACATGT 1 cut(s) 1141
Psp6I CCWGG 2 cut(s) 315, 1083
PspGI CCWGG 2 cut(s) 315, 1083
PspN4I GGNNCC 4 cut(s) 592, 730, 925, 1089
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 4 cut(s) 614, 760, 1011, 1087
RsaI GTAC 1 cut(s) 1162
RsaNI GTAC 1 cut(s) 1161
RseI CAYNNNNRTG 2 cut(s) 90, 776
SaqAI TTAA 4 cut(s) 65, 672, 1026, 1074
SatI GCNGC 8 cut(s) 204, 219, 285, 288, 468, 594, 699, 1131
Sau3AI GATC 5 cut(s) 223, 614, 760, 1011, 1087
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 4 cut(s) 317, 921, 941, 1085
SduI GDGCHC 1 cut(s) 979
SfaNI GCATC 5 cut(s) 105, 130, 478, 517, 685
SfcI CTRYAG 2 cut(s) 185, 213
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 90, 776
SmlI CTYRAG 3 cut(s) 64, 677, 955
SmoI CTYRAG 3 cut(s) 64, 677, 955
Sse9I AATT 4 cut(s) 54, 433, 518, 1154
SseBI AGGCCT 2 cut(s) 551, 855
SsiI CCGC 6 cut(s) 284, 424, 581, 594, 602, 1110
SspI AATATT 2 cut(s) 13, 849
SspMI CTAG 3 cut(s) 18, 512, 719
StuI AGGCCT 2 cut(s) 551, 855
StyD4I CCNGG 4 cut(s) 315, 919, 939, 1083
StyI CCWWGG 1 cut(s) 898
TaaI ACNGT 2 cut(s) 536, 710
TaqI TCGA 1 cut(s) 968
TasI AATT 4 cut(s) 54, 433, 518, 1154
TauI GCSGC 2 cut(s) 287, 596
TfiI GAWTC 3 cut(s) 404, 644, 1119
Tru1I TTAA 4 cut(s) 65, 672, 1026, 1074
Tru9I TTAA 4 cut(s) 65, 672, 1026, 1074
TscAI CASTG 4 cut(s) 105, 279, 715, 781
TseI GCWGC 6 cut(s) 203, 218, 287, 467, 698, 1130
TspDTI ATGAA 3 cut(s) 244, 410, 782
TspGWI ACGGA 2 cut(s) 416, 1007
TspRI CASTG 4 cut(s) 105, 279, 715, 781
Vha464I CTTAAG 1 cut(s) 64
VneI GTGCAC 1 cut(s) 975
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 2 cut(s) 433, 518
XceI RCATGY 1 cut(s) 1145
XcmI CCANNNNNNNNNTGG 2 cut(s) 105, 739
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 3 cut(s) 18, 512, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.