Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002447

Physical Location & Seq

Genomic Coordinates Forward (+)

1553049 .. 1554134

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0007600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAGTGATTGTGAGAGTCTTGGGTCTTTGCCTGTTGAGCTACCTTCTGGGCTGAAGATACTGGACTTGAGAAATTGCAAGAGTCTTAGGTCTTTGCCTGTCGAGCTACCTTCTGGGCTGAAGAGACTGGAGTTGATCTCTAGCAAGAGTCTTGGGTCTTTGCCTGTCGAGCTACCTTCTGGGCTGGAGTACCTGAACTTGAGCGATTGTGAGAGTCTTGGGTCTTTGCCTGTCAAGCTACCTTCTGGGCTGAAGAGACTGGACTTGAGAAATTGCAAGAGTCTTGGGTCTTTACCGAAGCTGCCATGGCTTCTAGGACTGTTTGATGCACATGGCTGCACGTCACTAGAGACAGTCTCAAGTCCGATGAGGACTGCACCCATACAAGGTAGGGATCAATATGTCAACCATTCTGAAAAATTCGAGGAACTTTTATTTATGAATTGCGTGAAATTGGATCAGAGTGCACGGAGCAACATAATGGCTGATGCACAGCTTAGAGTTATGAGAATTGCAACTGCATCACGTCTCCTCAATAAACCCCGTATGATTAAAATTGTTTGTCCGGGAAATGAAATTCCAAAGTGGATGAGGTATCAAAGTGAGGGATGTTCGATAAATATCAAGCTTCCTCCTCATTGGTTTCATCAAGGCTTCCTCGGTTACGCTCTATGCATTGTGGTTGCATTCAACAACTATACGCCACCCGATATTAACAATTATTCCTACTTTGGTTGTGAAACCCATCACAAAACTAACAATAGTCACGAAGTTTGTTGGGAAGCCCTCCGTATAAGCCTACCAGCTATTCTCATCAATTCAGATCATGTGTTCGTGTGGTATTTCTGCCCTGAATTTGTTCGATTAGAAAGTGCAATCAATCGTGAGGATTGGGTAAAAGCATCCGAGGCCTCTTTTGACTTCAAGTTGTACCAAAATATTATTCAGACCCCAAAAGAAAGAAATCTCTGTGACCGCTCCACTGTGAGGAGAAATCTCTTTGACCCCTCCACTGTGAGGGTGAAAAGGTGTGGAGTCTCCTTGTTGTATGCCCAAGAGATTGGAAAATTACTTGGGAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006842 GO:0006855 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009267 GO:0009605 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0016020 GO:0016036 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031667 GO:0031668 GO:0031669 GO:0032870 GO:0033554 GO:0033993 GO:0034220 GO:0034599 GO:0034614 GO:0035674 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042891 GO:0042895 GO:0044464 GO:0046873 GO:0046916 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071702 GO:0071731 GO:0071732 GO:0071944 GO:0097305 GO:0097366 GO:0098655 GO:0098656 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

361

Amino Acids

40.84

Weight (kDa)

8.69

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C-JID	PF20160	188 - 354	4.8e-20	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08040 AT3G08040
fragaria_vesca	FvH4_7g01040 FvH4_7g01040 FvH4_7g01040 FvH4_7g01040 FvH4_7g01040
malus_domestica	MD02G1311900.v1.1 MD07G1010700.v1.1
prunus_persica	Prupe.2G013000_v2.0.a1 Prupe.2G013000_v2.0.a1 Prupe.2G013000_v2.0.a1 Prupe.2G013100_v2.0.a1
pyrus_communis	pycom02g26180 pycom07g00880
rosa_chinensis	RchiOBHm_Chr1g0315981 RchiOBHm_Chr1g0316021
rosa_laevigata	RLG00000030710 RLG00000030716 RLG00000030718
rosa_multiflora	Rmu_sc0002014.1_g000023 Rmu_sc0002531.1_g000056 Rmu_sc0004566.1_g000010 Rmu_sc0005954.1_g000026
rosa_roxburghii	Rroxscaffold_4G00331210 Rroxscaffold_4G00331270
rosa_rugosa	Rorug01G0007300 Rorug01G0007400 Rorug01G0007500 Rorug01G0007600 Rorug01G0008000 Rorug01G0008100
rosa_samantha	Rh1AG018100 Rh1BG011500 Rh1BG012100 Rh1CG015400 Rh1CG015900 Rh1DG011200 Rh1DG012000
rosa_wichuraiana	Rw1G001120 Rw1G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	978
AciI	CCGC	1 cut(s)	976
AclWI	GGATC	2 cut(s)	402, 465
AcsI	RAATTY	3 cut(s)	419, 576, 854
AcuI	CTGAAG	3 cut(s)	74, 140, 272
AfaI	GTAC	2 cut(s)	191, 932
AfiI	CCNNNNNNNGG	3 cut(s)	386, 987, 1017
AgsI	TTSAA	2 cut(s)	691, 925
AjiI	CACGTC	2 cut(s)	342, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	927, 959
AluBI	AGCT	8 cut(s)	40, 106, 172, 238, 301, 496, 628, 806
AluI	AGCT	8 cut(s)	40, 106, 172, 238, 301, 496, 628, 806
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	6 cut(s)	118, 250, 344, 361, 533, 1042
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	402, 465
AoxI	GGCC	1 cut(s)	909
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	301, 336
ApoI	RAATTY	3 cut(s)	419, 576, 854
Asp700I	GAANNNNTTC	1 cut(s)	858
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	1033
BaeGI	GKGCMC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	288, 323
BccI	CCATC	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	6 cut(s)	118, 250, 344, 361, 533, 1042
BfaI	CTAG	3 cut(s)	141, 314, 347
BisI	GCNGC	2 cut(s)	302, 337
BlsI	GCNGC	2 cut(s)	303, 338
Bme1390I	CCNGG	1 cut(s)	567
BmgBI	CACGTC	2 cut(s)	342, 527
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	4 cut(s)	316, 478, 530, 911
BplI	GAGNNNNNCTC	4 cut(s)	122, 154, 341, 373
BpmI	CTGGAG	2 cut(s)	149, 206
BpuEI	CTTGAG	4 cut(s)	88, 220, 286, 343
BpuMI	CCSGG	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	3 cut(s)	305, 658, 906
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 987, 1017
Bse1I	ACTGG	3 cut(s)	66, 132, 264
Bse8I	GATNNNNATC	1 cut(s)	620
BseDI	CCNNGG	3 cut(s)	305, 658, 906
BseGI	GGATG	3 cut(s)	594, 614, 902
BseJI	GATNNNNATC	1 cut(s)	620
BseLI	CCNNNNNNNGG	3 cut(s)	386, 987, 1017
BseNI	ACTGG	3 cut(s)	66, 132, 264
BseRI	GAGGAG	3 cut(s)	521, 624, 1003
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	2 cut(s)	288, 323
BsgI	GTGCAG	2 cut(s)	322, 360
BshFI	GGCC	1 cut(s)	911
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	566
BslI	CCNNNNNNNGG	3 cut(s)	386, 987, 1017
BsmAI	GTCTC	6 cut(s)	118, 250, 344, 361, 533, 1042
BsmBI	CGTCTC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	686
BsnI	GGCC	1 cut(s)	911
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	135, 394, 457, 823
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	1 cut(s)	976
BspANI	GGCC	1 cut(s)	911
BspPI	GGATC	2 cut(s)	402, 465
BsrBI	CCGCTC	1 cut(s)	978
BsrI	ACTGG	3 cut(s)	66, 132, 264
BssECI	CCNNGG	3 cut(s)	305, 658, 906
BssMI	GATC	4 cut(s)	135, 394, 457, 823
BssT1I	CCWWGG	1 cut(s)	305
Bst4CI	ACNGT	4 cut(s)	321, 355, 985, 1015
Bst6I	CTCTTC	2 cut(s)	116, 248
BstDEI	CTNAG	2 cut(s)	86, 497
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	3 cut(s)	594, 614, 902
BstKTI	GATC	4 cut(s)	138, 397, 460, 826
BstMAI	GTCTC	6 cut(s)	118, 250, 344, 361, 533, 1042
BstMBI	GATC	4 cut(s)	135, 394, 457, 823
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 103, 169, 235, 307, 908
BstSCI	CCNGG	1 cut(s)	565
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	288, 323
BstXI	CCANNNNNNTGG	1 cut(s)	1061
BsuRI	GGCC	1 cut(s)	911
BtgI	CCRYGG	1 cut(s)	305
BtrI	CACGTC	2 cut(s)	342, 527
BtsCI	GGATG	3 cut(s)	594, 614, 902
BtsIMutI	CAGTG	2 cut(s)	981, 1011
Csp6I	GTAC	2 cut(s)	190, 931
CviAII	CATG	3 cut(s)	306, 332, 827
CviQI	GTAC	2 cut(s)	190, 931
DdeI	CTNAG	2 cut(s)	86, 497
DpnI	GATC	4 cut(s)	137, 396, 459, 825
DpnII	GATC	4 cut(s)	135, 394, 457, 823
Eam1104I	CTCTTC	2 cut(s)	116, 248
EarI	CTCTTC	2 cut(s)	116, 248
Eco130I	CCWWGG	1 cut(s)	305
Eco147I	AGGCCT	1 cut(s)	911
Eco57I	CTGAAG	3 cut(s)	74, 140, 272
EcoT14I	CCWWGG	1 cut(s)	305
EcoT22I	ATGCAT	1 cut(s)	677
ErhI	CCWWGG	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	3 cut(s)	309, 335, 830
FatI	CATG	3 cut(s)	305, 331, 826
Fnu4HI	GCNGC	2 cut(s)	302, 337
FokI	GGATG	3 cut(s)	601, 621, 889
Fsp4HI	GCNGC	2 cut(s)	302, 337
FspBI	CTAG	3 cut(s)	141, 314, 347
GluI	GCNGC	2 cut(s)	302, 337
GsuI	CTGGAG	2 cut(s)	149, 206
HaeIII	GGCC	1 cut(s)	911
HapII	CCGG	1 cut(s)	566
Hin1II	CATG	3 cut(s)	309, 335, 830
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	6 cut(s)	16, 82, 148, 214, 280, 1035
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	1 cut(s)	1033
Hpy166II	GTNNAC	2 cut(s)	406, 467
Hpy188I	TCNGA	6 cut(s)	366, 415, 462, 823, 907, 948
Hpy188III	TCNNGA	2 cut(s)	767, 884
Hpy8I	GTNNAC	2 cut(s)	406, 467
HpyAV	CCTTC	4 cut(s)	54, 120, 186, 252
HpyCH4III	ACNGT	4 cut(s)	321, 355, 985, 1015
HpyCH4IV	ACGT	2 cut(s)	341, 526
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 103, 169, 235, 307, 908
HpyF3I	CTNAG	2 cut(s)	86, 497
HpySE526I	ACGT	2 cut(s)	341, 526
Hsp92II	CATG	3 cut(s)	309, 335, 830
Kzo9I	GATC	4 cut(s)	135, 394, 457, 823
LmnI	GCTCC	2 cut(s)	471, 983
Lsp1109I	GCAGC	2 cut(s)	288, 323
LweI	GCATC	4 cut(s)	316, 478, 530, 911
MaeI	CTAG	3 cut(s)	141, 314, 347
MaeII	ACGT	2 cut(s)	341, 526
MaeIII	GTNAC	4 cut(s)	342, 662, 764, 971
MalI	GATC	4 cut(s)	137, 396, 459, 825
MbiI	CCGCTC	1 cut(s)	978
MboI	GATC	4 cut(s)	135, 394, 457, 823
MboII	GAAGA	3 cut(s)	67, 133, 265
MhlI	GDGCHC	1 cut(s)	469
MlyI	GAGTC	6 cut(s)	25, 91, 157, 223, 289, 1044
Mph1103I	ATGCAT	1 cut(s)	677
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	2 cut(s)	552, 714
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	686
MwoI	GCNNNNNNNGC	6 cut(s)	37, 103, 169, 235, 307, 908
NciI	CCSGG	1 cut(s)	567
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	4 cut(s)	135, 394, 457, 823
NlaIII	CATG	3 cut(s)	309, 335, 830
NmuCI	GTSAC	3 cut(s)	342, 764, 971
NsiI	ATGCAT	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	911
PctI	GAATGC	1 cut(s)	686
PdmI	GAANNNNTTC	1 cut(s)	858
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	303, 338
PleI	GAGTC	6 cut(s)	24, 90, 156, 222, 288, 1043
PpsI	GAGTC	6 cut(s)	24, 90, 156, 222, 288, 1043
RsaI	GTAC	2 cut(s)	191, 932
RsaNI	GTAC	2 cut(s)	190, 931
SaqAI	TTAA	2 cut(s)	552, 714
SatI	GCNGC	2 cut(s)	302, 337
Sau3AI	GATC	4 cut(s)	135, 394, 457, 823
SchI	GAGTC	6 cut(s)	25, 91, 157, 223, 289, 1044
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	4 cut(s)	316, 478, 530, 911
SmlI	CTYRAG	4 cut(s)	67, 199, 265, 358
SmoI	CTYRAG	4 cut(s)	67, 199, 265, 358
SseBI	AGGCCT	1 cut(s)	911
SsiI	CCGC	1 cut(s)	976
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	3 cut(s)	141, 314, 347
StuI	AGGCCT	1 cut(s)	911
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	4 cut(s)	321, 355, 985, 1015
TaiI	ACGT	2 cut(s)	344, 529
TaqI	TCGA	5 cut(s)	102, 168, 423, 614, 862
Tru1I	TTAA	2 cut(s)	552, 714
Tru9I	TTAA	2 cut(s)	552, 714
TscAI	CASTG	2 cut(s)	988, 1018
TseFI	GTSAC	3 cut(s)	342, 764, 971
TseI	GCWGC	2 cut(s)	301, 336
Tsp45I	GTSAC	3 cut(s)	342, 764, 971
TspDTI	ATGAA	3 cut(s)	455, 588, 635
TspGWI	ACGGA	2 cut(s)	484, 779
TspRI	CASTG	2 cut(s)	988, 1018
VneI	GTGCAC	1 cut(s)	465
XapI	RAATTY	3 cut(s)	419, 576, 854
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	3 cut(s)	141, 314, 347
Zsp2I	ATGCAT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.