Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002447

Physical Location & Seq

Genomic Coordinates Reverse (-)

1539747 .. 1540531

Gene Structure 785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0007400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTACGTGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGTACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTTAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGGGGACAAACATCCTTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGAGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006842 GO:0006855 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009267 GO:0009605 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0016020 GO:0016036 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031667 GO:0031668 GO:0031669 GO:0032870 GO:0033554 GO:0033993 GO:0034220 GO:0034599 GO:0034614 GO:0035674 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042891 GO:0042895 GO:0044464 GO:0046873 GO:0046916 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071702 GO:0071731 GO:0071732 GO:0071944 GO:0097305 GO:0097366 GO:0098655 GO:0098656 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

191

Amino Acids

21.14

Weight (kDa)

5.29

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	3.8e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08040 AT3G08040
fragaria_vesca	FvH4_7g01040 FvH4_7g01040 FvH4_7g01040 FvH4_7g01040 FvH4_7g01040
malus_domestica	MD02G1311900.v1.1 MD07G1010700.v1.1
prunus_persica	Prupe.2G013000_v2.0.a1 Prupe.2G013000_v2.0.a1 Prupe.2G013000_v2.0.a1 Prupe.2G013100_v2.0.a1
pyrus_communis	pycom02g26180 pycom07g00880
rosa_chinensis	RchiOBHm_Chr1g0315981 RchiOBHm_Chr1g0316021
rosa_laevigata	RLG00000030710 RLG00000030716 RLG00000030718
rosa_multiflora	Rmu_sc0002014.1_g000023 Rmu_sc0002531.1_g000056 Rmu_sc0004566.1_g000010 Rmu_sc0005954.1_g000026
rosa_roxburghii	Rroxscaffold_4G00331210 Rroxscaffold_4G00331270
rosa_rugosa	Rorug01G0007300 Rorug01G0007400 Rorug01G0007500 Rorug01G0007600 Rorug01G0008000 Rorug01G0008100
rosa_samantha	Rh1AG018100 Rh1BG011500 Rh1BG012100 Rh1CG015400 Rh1CG015900 Rh1DG011200 Rh1DG012000
rosa_wichuraiana	Rw1G001120 Rw1G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	504, 513
AclWI	GGATC	5 cut(s)	118, 131, 141, 333, 346
AfaI	GTAC	2 cut(s)	203, 328
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	431
AhlI	ACTAGT	2 cut(s)	314, 365
AjnI	CCWGG	3 cut(s)	92, 322, 420
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	3 cut(s)	7, 199, 538
AluI	AGCT	3 cut(s)	7, 199, 538
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	5 cut(s)	118, 131, 141, 333, 346
Ama87I	CYCGRG	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	50, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
Asp700I	GAANNNNTTC	2 cut(s)	316, 435
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	410, 470
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	360
BaeGI	GKGCMC	2 cut(s)	164, 306
BamHI	GGATCC	2 cut(s)	123, 338
BanII	GRGCYC	2 cut(s)	262, 540
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	62, 280
BccI	CCATC	2 cut(s)	26, 374
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	3 cut(s)	94, 324, 422
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 365
BfaI	CTAG	2 cut(s)	315, 366
BfmI	CTRYAG	2 cut(s)	168, 553
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	51, 294
BlpI	GCTNAGC	1 cut(s)	539
BlsI	GCNGC	2 cut(s)	52, 295
Bme1390I	CCNGG	4 cut(s)	55, 94, 324, 422
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	5 cut(s)	102, 125, 245, 340, 361
BmrFI	CCNGG	4 cut(s)	55, 94, 324, 422
BmsI	GCATC	2 cut(s)	483, 550
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	2 cut(s)	93, 179
Bpu1102I	GCTNAGC	1 cut(s)	539
BpuEI	CTTGAG	3 cut(s)	113, 282, 554
BpuMI	CCSGG	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	3 cut(s)	94, 324, 422
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	37, 392
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	553
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	2 cut(s)	423, 426
BseSI	GKGCMC	2 cut(s)	164, 306
BseXI	GCAGC	2 cut(s)	62, 280
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	399
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	4 cut(s)	164, 262, 306, 540
Bsp143I	GATC	6 cut(s)	112, 123, 133, 186, 338, 415
Bsp1720I	GCTNAGC	1 cut(s)	539
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	504, 513
BspCNI	CTCAG	1 cut(s)	552
BspHI	TCATGA	1 cut(s)	477
BspLI	GGNNCC	5 cut(s)	102, 125, 245, 340, 361
BspPI	GGATC	5 cut(s)	118, 131, 141, 333, 346
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	6 cut(s)	112, 123, 133, 186, 338, 415
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	3 cut(s)	94, 324, 422
Bst6I	CTCTTC	1 cut(s)	272
BstBAI	YACGTR	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	539, 573
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	37, 392
BstKTI	GATC	6 cut(s)	115, 126, 136, 189, 341, 418
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	6 cut(s)	112, 123, 133, 186, 338, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	510, 569
BstNI	CCWGG	3 cut(s)	94, 324, 422
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	4 cut(s)	53, 92, 322, 420
BstSFI	CTRYAG	2 cut(s)	168, 553
BstSLI	GKGCMC	2 cut(s)	164, 306
BstV1I	GCAGC	2 cut(s)	62, 280
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	4 cut(s)	123, 133, 186, 338
BstYI	RGATCY	4 cut(s)	123, 133, 186, 338
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	37, 392
CciI	TCATGA	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	202, 327
CviAII	CATG	6 cut(s)	215, 307, 451, 455, 478, 568
CviQI	GTAC	2 cut(s)	202, 327
DdeI	CTNAG	2 cut(s)	539, 573
DpnI	GATC	6 cut(s)	114, 125, 135, 188, 340, 417
DpnII	GATC	6 cut(s)	112, 123, 133, 186, 338, 415
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 540
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	3 cut(s)	92, 322, 420
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	456
EcoT38I	GRGCYC	2 cut(s)	262, 540
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	6 cut(s)	218, 310, 454, 458, 481, 571
FaiI	YATR	9 cut(s)	177, 210, 216, 308, 452, 456, 479, 510, 569
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	6 cut(s)	214, 306, 450, 454, 477, 567
Fnu4HI	GCNGC	2 cut(s)	51, 294
FokI	GGATG	2 cut(s)	44, 379
FriOI	GRGCYC	2 cut(s)	262, 540
Fsp4HI	GCNGC	2 cut(s)	51, 294
FspBI	CTAG	2 cut(s)	315, 366
GluI	GCNGC	2 cut(s)	51, 294
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	93, 179
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	6 cut(s)	218, 310, 454, 458, 481, 571
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	410, 470
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	5 cut(s)	110, 182, 247, 263, 478
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	285, 400, 454, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	510, 569
HpyF3I	CTNAG	2 cut(s)	539, 573
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	6 cut(s)	218, 310, 454, 458, 481, 571
Kzo9I	GATC	6 cut(s)	112, 123, 133, 186, 338, 415
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	62, 280
LweI	GCATC	2 cut(s)	483, 550
MaeI	CTAG	2 cut(s)	315, 366
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	6 cut(s)	114, 125, 135, 188, 340, 417
MboI	GATC	6 cut(s)	112, 123, 133, 186, 338, 415
MboII	GAAGA	2 cut(s)	289, 493
MflI	RGATCY	4 cut(s)	123, 133, 186, 338
MhlI	GDGCHC	4 cut(s)	164, 262, 306, 540
MluCI	AATT	1 cut(s)	352
Mph1103I	ATGCAT	1 cut(s)	456
MroXI	GAANNNNTTC	2 cut(s)	316, 435
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	4 cut(s)	55, 94, 324, 422
MvaI	CCWGG	3 cut(s)	94, 324, 422
MwoI	GCNNNNNNNGC	2 cut(s)	510, 569
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	6 cut(s)	112, 123, 133, 186, 338, 415
NlaIII	CATG	6 cut(s)	218, 310, 454, 458, 481, 571
NlaIV	GGNNCC	5 cut(s)	102, 125, 245, 340, 361
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	261
PagI	TCATGA	1 cut(s)	477
PciI	ACATGT	1 cut(s)	214
PdmI	GAANNNNTTC	2 cut(s)	316, 435
PkrI	GCNGC	2 cut(s)	52, 295
Ppu21I	YACGTR	1 cut(s)	159
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	3 cut(s)	92, 322, 420
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	92, 322, 420
PspN4I	GGNNCC	5 cut(s)	102, 125, 245, 340, 361
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	4 cut(s)	123, 133, 186, 338
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	203, 328
RsaNI	GTAC	2 cut(s)	202, 327
SacI	GAGCTC	1 cut(s)	540
SatI	GCNGC	2 cut(s)	51, 294
Sau3AI	GATC	6 cut(s)	112, 123, 133, 186, 338, 415
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	4 cut(s)	55, 94, 324, 422
SduI	GDGCHC	4 cut(s)	164, 262, 306, 540
SetI	ASST	7 cut(s)	9, 98, 161, 201, 284, 502, 540
SfaNI	GCATC	2 cut(s)	483, 550
SfcI	CTRYAG	2 cut(s)	168, 553
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	128, 261, 297, 533
SmoI	CTYRAG	4 cut(s)	128, 261, 297, 533
SpeI	ACTAGT	2 cut(s)	314, 365
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	2 cut(s)	504, 513
SspMI	CTAG	2 cut(s)	315, 366
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	4 cut(s)	53, 92, 322, 420
StyI	CCWWGG	1 cut(s)	306
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	27, 262
TasI	AATT	1 cut(s)	352
TseI	GCWGC	2 cut(s)	50, 293
TspDTI	ATGAA	2 cut(s)	290, 494
VpaK11BI	GGWCC	1 cut(s)	360
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	316, 435
XspI	CTAG	2 cut(s)	315, 366
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.