Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002447

Physical Location & Seq

Genomic Coordinates Reverse (-)

66356426 .. 66357244

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTTGATGACCTGGAAAAAGGGGTTGCTAAACCAAAACCTGAGACGAAAGAGCCTGCACTAGATGATGAAAATGGTGAAGCCTCAGACATAAGCAAGCATCTGGGAAATGATGAAGACAAGGAAAATGGTGAGAACTCATACAAGTTAGTAGATGAAGGCAGTGGAGCAAAGAATTCCATACTGGAAAATTCTAAGCTGGAAAATGGAGAGAAAGATGTTCCTAAAAATAGTGATCCACAAGAAAATGGTTTCAAGACAAGTACCGAAAACGGTCCATCTGTTGTGATGAGGCAAAACAAGAAGGCAAAGATGAAGTATAAAATGCGTAATATTGCTTCCGCATCAACAGCACTCATCTTCGGTGCAATACTTGGCATCCTGCAAACTATATTTCTCGTGTTAGTATCCAAAGTTCTTCTTCGTGTGATGGGTGTGAAACATGACTCCCCTATGCTAAAGCTAGCATTGGAGTACTTGAGAGTAAGGTTGATCGGTGCACCTGCAGTTCTTCTTACATTGGCCATGCAAGGAATCTTCCGAGGGTTTAAGGATACTAAAACATGTTTATATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006842 GO:0006855 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009267 GO:0009605 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0016020 GO:0016036 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031667 GO:0031668 GO:0031669 GO:0032870 GO:0033554 GO:0033993 GO:0034220 GO:0034599 GO:0034614 GO:0035674 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042891 GO:0042895 GO:0044464 GO:0046873 GO:0046916 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071702 GO:0071731 GO:0071732 GO:0071944 GO:0097305 GO:0097366 GO:0098655 GO:0098656 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

193

Amino Acids

21.07

Weight (kDa)

7.74

Isoelectric Point (pI)

23.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	94 - 192	1.9e-11	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08040 AT3G08040
fragaria_vesca	FvH4_7g01040 FvH4_7g01040 FvH4_7g01040 FvH4_7g01040 FvH4_7g01040
malus_domestica	MD02G1311900.v1.1 MD07G1010700.v1.1
prunus_persica	Prupe.2G013000_v2.0.a1 Prupe.2G013000_v2.0.a1 Prupe.2G013000_v2.0.a1 Prupe.2G013100_v2.0.a1
pyrus_communis	pycom02g26180 pycom07g00880
rosa_chinensis	RchiOBHm_Chr1g0315981 RchiOBHm_Chr1g0316021
rosa_laevigata	RLG00000030710 RLG00000030716 RLG00000030718
rosa_multiflora	Rmu_sc0002014.1_g000023 Rmu_sc0002531.1_g000056 Rmu_sc0004566.1_g000010 Rmu_sc0005954.1_g000026
rosa_roxburghii	Rroxscaffold_4G00331210 Rroxscaffold_4G00331270
rosa_rugosa	Rorug01G0007300 Rorug01G0007400 Rorug01G0007500 Rorug01G0007600 Rorug01G0008000 Rorug01G0008100
rosa_samantha	Rh1AG018100 Rh1BG011500 Rh1BG012100 Rh1CG015400 Rh1CG015900 Rh1DG011200 Rh1DG012000
rosa_wichuraiana	Rw1G001120 Rw1G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	511
Acc36I	ACCTGC	1 cut(s)	511
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	175, 190
AfaI	GTAC	2 cut(s)	265, 476
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	2 cut(s)	199, 463
AluI	AGCT	2 cut(s)	199, 463
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	522
ApaLI	GTGCAC	1 cut(s)	498
ApoI	RAATTY	2 cut(s)	175, 190
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	89, 143
AsuNHI	GCTAGC	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	524
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
BauI	CACGAG	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	502
BccI	CCATC	2 cut(s)	286, 424
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	2 cut(s)	418, 547
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	62, 464
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	511
BfuI	GTATCC	2 cut(s)	418, 547
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	3 cut(s)	109, 353, 387
BmtI	GCTAGC	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	33, 99
BseNI	ACTGG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	235, 492
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	2 cut(s)	34, 98
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	511
BspOI	GCTAGC	1 cut(s)	467
BspPI	GGATC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	2 cut(s)	235, 492
BssSI	CACGAG	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	57, 98, 465
BstDEI	CTNAG	3 cut(s)	42, 85, 195
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	2 cut(s)	238, 495
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	235, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	502
BstV2I	GAAGAC	1 cut(s)	123
BsuI	GTATCC	2 cut(s)	418, 547
BsuRI	GGCC	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	378
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	3 cut(s)	57, 98, 465
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	264, 475
CviAII	CATG	3 cut(s)	443, 526, 564
CviJI	RGCY	5 cut(s)	55, 83, 199, 463, 524
CviKI_1	RGCY	5 cut(s)	55, 83, 199, 463, 524
CviQI	GTAC	2 cut(s)	264, 475
DdeI	CTNAG	3 cut(s)	42, 85, 195
DpnI	GATC	2 cut(s)	237, 494
DpnII	GATC	2 cut(s)	235, 492
EaeI	YGGCCR	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	3 cut(s)	446, 529, 567
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	3 cut(s)	442, 525, 563
FokI	GGATG	1 cut(s)	365
FspBI	CTAG	2 cut(s)	62, 464
HaeIII	GGCC	1 cut(s)	524
Hin1II	CATG	3 cut(s)	446, 529, 567
HinfI	GANTC	2 cut(s)	446, 534
HphI	GGTGA	2 cut(s)	89, 143
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	88, 542
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	2 cut(s)	152, 298
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	6 cut(s)	59, 368, 385, 500, 506, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	3 cut(s)	42, 85, 195
Hsp92II	CATG	3 cut(s)	446, 529, 567
Kzo9I	GATC	2 cut(s)	235, 492
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	8 cut(s)	26, 54, 69, 89, 170, 185, 395, 516
LweI	GCATC	3 cut(s)	109, 353, 387
MaeI	CTAG	2 cut(s)	62, 464
MalI	GATC	2 cut(s)	237, 494
MboI	GATC	2 cut(s)	235, 492
MboII	GAAGA	6 cut(s)	128, 352, 410, 413, 503, 529
MhlI	GDGCHC	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	2 cut(s)	175, 190
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	3 cut(s)	94, 285, 536
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	2 cut(s)	235, 492
NheI	GCTAGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	446, 529, 567
NspI	RCATGY	1 cut(s)	567
PaqCI	CACCTGC	1 cut(s)	511
PciI	ACATGT	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	534
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PscI	ACATGT	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	275
PsrI	GAACNNNNNNTAC	2 cut(s)	399, 431
PstI	CTGCAG	1 cut(s)	508
RsaI	GTAC	2 cut(s)	265, 476
RsaNI	GTAC	2 cut(s)	264, 475
SaqAI	TTAA	1 cut(s)	549
Sau3AI	GATC	2 cut(s)	235, 492
Sau96I	GGNCC	1 cut(s)	275
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	6 cut(s)	15, 43, 201, 465, 491, 505
SfaNI	GCATC	3 cut(s)	109, 353, 387
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	2 cut(s)	175, 190
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	62, 464
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	275
TasI	AATT	2 cut(s)	175, 190
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	534
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	4 cut(s)	84, 129, 171, 329
TspRI	CASTG	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	175, 190
XceI	RCATGY	1 cut(s)	567
XspI	CTAG	2 cut(s)	62, 464
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.