Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002447

Physical Location & Seq

Genomic Coordinates Forward (+)

1533922 .. 1536562

Gene Structure 2641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0007300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGGCTGCTACTTCTTCTTGCTCTGCTATCATCCCTCGGGAGAAATATGATGTATTTCTTAGTTTCAGAGGCGAGGACACCCGGAATACTTTTACCAGCCATCTTTATGAGGCTTTATGTCGGACCAAAATCCAAACTTACATAGATTACAAATTGGAGAGAGGAGATGAAATCGCACCTGCCCTTCTCGAAGCAATCAGTGAATCTAAGCTTTCGATTATCATTTTCTCCAAAAACTATGCTTCTTCTGCATGGTGCTTGGATGAACTTGTGCACATACTCGAATGTAGAGATAAACAGTTTGTTATACCCATCTTCTACGGGGTAGATCCATCAGCCGTACGCAAACAATTTGGGAGTTATGCGGATGCATTTGTTGAACATGAGAAACGTTTCAAGGACTCAATGGACAAGGTGCTCAGGTGGAGAAAGGCTTTGACAACAGCAGCCAATATATCTGGGTTTGATTCCCAAACAATTAGGCCGGAGTCTGATTTAGTTAAGATTGTGGTCAATGACATTTTGGCGAAATTGAATTGCAAATTGCAAATCGCACGGGGTTTAGAGGGCCTGGTTGGAATGGAAAAACACATTCAACAAGTTAAATTTTTATTATGTCTCAACTCACTGGATGTCCAGATTGTAGGTATTTGGGGTATGGGTGGTATCGGTAAGACCACCATTGCTGAGGTTGTATTTGATCGTCTCTCTTCTCAATTCGAAGCTTGCTGCTTCATTGCAAATGTTAGGGAATCGGAGGCGAAACATGGACTAAATGATTTGTGGAATCAGATTCTTCGTAAACTACTGAAGGAAGAAAATCTATGTATGGCCACATCATCTCTTGTCTCAAATTTTGCAAGAGAGAGGCTTCGCCGTACAAAGGCCCTCATTGTTCTTGATGATGTGAGTGAGTTTTCCCAATTAGAACTTTTAGCTAGAGGTGATTGCAATCTGTTTGGCCCTGGAAGTAGAATACTTGTAACAACCAGAAATAAACGCATATTTAGGAATAGTGTTGATAATGATAAGATATATGAGGTTAAGGAATTAGCCTATGATGAAGCTCTTGAGCTCTTTCATTTGATAGCTTTTAGAAATAAGTCTACCCCGGGTGATTATACAACTTTTGCAAAAGAGGTGGTAGATTATGCTGGAGGCAATCCATTGGCTCTTACAATCTTGGGCTCCGTAATATTCTGTCATTGCAAGAGCAAAGAAGACTGGGAAGGTGAATTAGTGAAATTAAAAAAATTTCCTAACAAAAAAATCCAGAATGTATTGAGGTTCAGTTATGATGGATTAGAAGAAAATGAGAGGGAGATATTTCTCGATATCGCCTGTTATCACAAAGGGAAGCATATTGATGAGGCAAAAAGAATTTTAGATGCCTGTGGTTTTTGTGCCAATGCAGGAGTAAAAATTCTCGTTGATATGTCTCTCATATCCGTAGGTGAATATTCAACACTTCAGATGCATGATTTGATACAAGAAATGGGTCGGGAAATTGTTCGTGATCCATGTGTTAAAAATCCTGGAAAACACAGTAGATTGTGGCTTGCAAATGATGTTCGTCATGTACTGACAAATAATACGGGTACTGAAGACATTGAGTGCATGGCCATGAAGATGGATCTCATTAAAGATTTATACGTGAATGTTGCATCCTTCGAAAAGATGCATAAGCAAAGATTACTAGATCTATACTCATGCTCGTACACCAGGGGTGTCAACAAATTGCACCTTCCTCCAGGTTTCGAGTTTCTCCCTGAGGCCCTTAAATATCTGGGGTGGGATTTCTATCCTTTGACATCTCTGCCATCGAGGTTTTCTTCAGAAAACCTTGTCGAGCTTCATATGCGCAACAACCGACTTGAGCAACTTTGGAATAAAGGCGTGCAGATCAATCTTGGGAGCATAAAACGTATCGATCTTAGTCACTCCGAGCACCTGGCTGATGTTTCAGCTCTGATTGAGAGTCCAACTCTCGAGAGCATTGACCTTTGGGGTTGTAAAAGTTTGGTTCAACTTCCTTCATCGTTTCAGAATCTTGCCAAGCTTACTTCTCTTAGTCTGAATGGTTGCTCCAATCTCAAAATTCTCCCAGAGATGCCAGGCAATCTGGAAGTCTTAGTGTTGAATCGGACTGCAATAGAAGAATTGCCTTCATCAATTTGGTCTCTCGAGAAGCTTCATCATTTGGATCTTGAAATATGTGAAGAGCTTAAGAATCTTCCAAGCAGCACTTGTAGGTTGAATTCGCTCCCAATTCTTGATCTACAAGGCTGCCGCTCTCTTGAGTCTTTGATAGCAGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006842 GO:0006855 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009267 GO:0009605 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0016020 GO:0016036 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031667 GO:0031668 GO:0031669 GO:0032870 GO:0033554 GO:0033993 GO:0034220 GO:0034599 GO:0034614 GO:0035674 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042891 GO:0042895 GO:0044464 GO:0046873 GO:0046916 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071702 GO:0071731 GO:0071732 GO:0071944 GO:0097305 GO:0097366 GO:0098655 GO:0098656 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

773

Amino Acids

87.57

Weight (kDa)

6.15

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	15 - 193	6.3e-57	TIR domain
TIR_2	PF13676	18 - 125	3.5e-13	TIR domain
NB-ARC	PF00931	195 - 369	3.5e-23	NB-ARC domain
WHD_ROQ1	PF23282	436 - 506	9.5e-24	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	709 - 766	7.5e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08040 AT3G08040
fragaria_vesca	FvH4_7g01040 FvH4_7g01040 FvH4_7g01040 FvH4_7g01040 FvH4_7g01040
malus_domestica	MD02G1311900.v1.1 MD07G1010700.v1.1
prunus_persica	Prupe.2G013000_v2.0.a1 Prupe.2G013000_v2.0.a1 Prupe.2G013000_v2.0.a1 Prupe.2G013100_v2.0.a1
pyrus_communis	pycom02g26180 pycom07g00880
rosa_chinensis	RchiOBHm_Chr1g0315981 RchiOBHm_Chr1g0316021
rosa_laevigata	RLG00000030710 RLG00000030716 RLG00000030718
rosa_multiflora	Rmu_sc0002014.1_g000023 Rmu_sc0002531.1_g000056 Rmu_sc0004566.1_g000010 Rmu_sc0005954.1_g000026
rosa_roxburghii	Rroxscaffold_4G00331210 Rroxscaffold_4G00331270
rosa_rugosa	Rorug01G0007300 Rorug01G0007400 Rorug01G0007500 Rorug01G0007600 Rorug01G0008000 Rorug01G0008100
rosa_samantha	Rh1AG018100 Rh1BG011500 Rh1BG012100 Rh1CG015400 Rh1CG015900 Rh1DG011200 Rh1DG012000
rosa_wichuraiana	Rw1G001120 Rw1G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc16I	TGCGCA	1 cut(s)	1862
Acc36I	ACCTGC	1 cut(s)	187
AccBSI	CCGCTC	1 cut(s)	2292
AccI	GTMKAC	1 cut(s)	1106
AciI	CCGC	2 cut(s)	365, 2290
AclI	AACGTT	1 cut(s)	391
AclWI	GGATC	4 cut(s)	323, 1511, 1641, 2211
AcoI	YGGCCR	2 cut(s)	831, 1620
AcsI	RAATTY	7 cut(s)	605, 853, 1253, 1380, 1422, 2097, 2257
AcuI	CTGAAG	4 cut(s)	830, 1454, 1623, 1818
AfaI	GTAC	5 cut(s)	342, 880, 1581, 1600, 1718
AfiI	CCNNNNNNNGG	1 cut(s)	883
AflII	CTTAAG	1 cut(s)	2225
AgsI	TTSAA	9 cut(s)	380, 397, 535, 596, 1464, 2027, 2140, 2210, 2257
AjnI	CCWGG	7 cut(s)	570, 964, 1534, 1721, 1750, 1950, 2113
Alw21I	GWGCWC	4 cut(s)	276, 420, 1077, 1950
Alw26I	GTCTC	5 cut(s)	623, 710, 853, 1443, 2184
Alw44I	GTGCAC	1 cut(s)	272
AlwI	GGATC	4 cut(s)	323, 1511, 1641, 2211
Ama87I	CYCGRG	4 cut(s)	36, 1111, 1988, 2183
AoxI	GGCC	7 cut(s)	482, 568, 831, 885, 961, 1620, 1773
ApaLI	GTGCAC	1 cut(s)	272
ApeKI	GCWGC	6 cut(s)	5, 446, 729, 2241, 2286, 2312
ApoI	RAATTY	7 cut(s)	605, 853, 1253, 1380, 1422, 2097, 2257
Asp700I	GAANNNNTTC	2 cut(s)	392, 1509
AspLEI	GCGC	1 cut(s)	1863
AspS9I	GGNCC	5 cut(s)	123, 568, 886, 962, 1774
AsuC2I	CCSGG	3 cut(s)	82, 1112, 1113
AsuHPI	GGTGA	4 cut(s)	956, 1127, 1244, 1466
AsuII	TTCGAA	2 cut(s)	720, 1671
AvaI	CYCGRG	4 cut(s)	36, 1111, 1988, 2183
AvaII	GGWCC	1 cut(s)	123
AxyI	CCTNAGG	1 cut(s)	1770
BaeGI	GKGCMC	1 cut(s)	276
BalI	TGGCCA	2 cut(s)	833, 1622
BanII	GRGCYC	2 cut(s)	1077, 1190
BbsI	GAAGAC	2 cut(s)	1227, 1611
Bbv12I	GWGCWC	4 cut(s)	276, 420, 1077, 1950
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	4 cut(s)	458, 716, 2253, 2273
BccI	CCATC	6 cut(s)	108, 320, 340, 1292, 1624, 1828
BceAI	ACGGC	2 cut(s)	323, 861
BciT130I	CCWGG	7 cut(s)	572, 966, 1536, 1723, 1752, 1952, 2115
BcnI	CCSGG	3 cut(s)	82, 1112, 1113
BcoDI	GTCTC	5 cut(s)	623, 710, 853, 1443, 2184
BfaI	CTAG	2 cut(s)	939, 1697
BfrI	CTTAAG	1 cut(s)	2225
BfuAI	ACCTGC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	1699
BisI	GCNGC	7 cut(s)	6, 447, 730, 2242, 2287, 2290, 2313
BlsI	GCNGC	7 cut(s)	7, 448, 731, 2243, 2288, 2291, 2314
Bme18I	GGWCC	1 cut(s)	123
BmeT110I	CYCGRG	4 cut(s)	36, 1111, 1988, 2183
BmgT120I	GGNCC	5 cut(s)	123, 568, 886, 962, 1774
BmiI	GGNNCC	1 cut(s)	1189
BmrI	ACTGGG	1 cut(s)	1234
BmsI	GCATC	6 cut(s)	358, 1378, 1464, 1668, 1673, 2100
BmuI	ACTGGG	1 cut(s)	1234
BpiI	GAAGAC	2 cut(s)	1227, 1611
BplI	GAGNNNNNCTC	2 cut(s)	1969, 2001
BpmI	CTGGAG	2 cut(s)	1176, 1734
Bpu10I	CCTNAGC	2 cut(s)	419, 687
Bpu14I	TTCGAA	2 cut(s)	720, 1671
BpuEI	CTTGAG	3 cut(s)	1091, 1895, 2318
BpuMI	CCSGG	3 cut(s)	82, 1112, 1113
Bsa29I	ATCGAT	1 cut(s)	1929
BsaAI	YACGTR	1 cut(s)	1654
BsaBI	GATNNNNATC	2 cut(s)	951, 1800
BsaI	GGTCTC	1 cut(s)	2184
BsaJI	CCNNGG	5 cut(s)	35, 964, 1110, 1111, 1722
Bsc4I	CCNNNNNNNGG	1 cut(s)	883
Bse1I	ACTGG	2 cut(s)	633, 1229
Bse21I	CCTNAGG	1 cut(s)	1770
Bse3DI	GCAATG	3 cut(s)	681, 735, 1204
Bse8I	GATNNNNATC	2 cut(s)	951, 1800
BseBI	CCWGG	7 cut(s)	572, 966, 1536, 1723, 1752, 1952, 2115
BseCI	ATCGAT	1 cut(s)	1929
BseDI	CCNNGG	5 cut(s)	35, 964, 1110, 1111, 1722
BseGI	GGATG	5 cut(s)	30, 268, 373, 637, 1664
BseJI	GATNNNNATC	2 cut(s)	951, 1800
BseLI	CCNNNNNNNGG	1 cut(s)	883
BseMI	GCAATG	3 cut(s)	681, 735, 1204
BseMII	CTCAG	3 cut(s)	433, 678, 1761
BseNI	ACTGG	2 cut(s)	633, 1229
BseRI	GAGGAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	4 cut(s)	458, 716, 2253, 2273
BsgI	GTGCAG	1 cut(s)	1919
BshFI	GGCC	7 cut(s)	484, 570, 833, 887, 963, 1622, 1775
BshVI	ATCGAT	1 cut(s)	1929
BsiHKAI	GWGCWC	4 cut(s)	276, 420, 1077, 1950
BsiHKCI	CYCGRG	4 cut(s)	36, 1111, 1988, 2183
BsiSI	CCGG	3 cut(s)	82, 485, 1112
BsiWI	CGTACG	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	883
BsmAI	GTCTC	5 cut(s)	623, 710, 853, 1443, 2184
BsmBI	CGTCTC	1 cut(s)	710
BsnI	GGCC	7 cut(s)	484, 570, 833, 887, 963, 1622, 1775
Bso31I	GGTCTC	1 cut(s)	2184
BsoBI	CYCGRG	4 cut(s)	36, 1111, 1988, 2183
Bsp119I	TTCGAA	2 cut(s)	720, 1671
Bsp1286I	GDGCHC	5 cut(s)	276, 420, 1077, 1190, 1950
Bsp143I	GATC	9 cut(s)	328, 700, 1516, 1633, 1699, 1902, 1930, 2203, 2275
BspACI	CCGC	2 cut(s)	365, 2290
BspANI	GGCC	7 cut(s)	484, 570, 833, 887, 963, 1622, 1775
BspCNI	CTCAG	3 cut(s)	432, 679, 1762
BspDI	ATCGAT	1 cut(s)	1929
BspLI	GGNNCC	1 cut(s)	1189
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	4 cut(s)	323, 1511, 1641, 2211
BspQI	GCTCTTC	1 cut(s)	2214
BspT104I	TTCGAA	2 cut(s)	720, 1671
BspTI	CTTAAG	1 cut(s)	2225
BspTNI	GGTCTC	1 cut(s)	2184
BsrBI	CCGCTC	1 cut(s)	2292
BsrDI	GCAATG	3 cut(s)	681, 735, 1204
BsrI	ACTGG	2 cut(s)	633, 1229
BssECI	CCNNGG	5 cut(s)	35, 964, 1110, 1111, 1722
BssMI	GATC	9 cut(s)	328, 700, 1516, 1633, 1699, 1902, 1930, 2203, 2275
Bst2UI	CCWGG	7 cut(s)	572, 966, 1536, 1723, 1752, 1952, 2115
Bst4CI	ACNGT	2 cut(s)	300, 1547
Bst6I	CTCTTC	2 cut(s)	715, 2214
BstAFI	CTTAAG	1 cut(s)	2225
BstBAI	YACGTR	1 cut(s)	1654
BstBI	TTCGAA	2 cut(s)	720, 1671
BstC8I	GCNNGC	3 cut(s)	727, 1560, 1898
BstDEI	CTNAG	8 cut(s)	59, 207, 419, 687, 1770, 1934, 2069, 2131
BstF5I	GGATG	5 cut(s)	30, 268, 373, 637, 1664
BstHHI	GCGC	1 cut(s)	1863
BstKTI	GATC	9 cut(s)	331, 703, 1519, 1636, 1702, 1905, 1933, 2206, 2278
BstMAI	GTCTC	5 cut(s)	623, 710, 853, 1443, 2184
BstMBI	GATC	9 cut(s)	328, 700, 1516, 1633, 1699, 1902, 1930, 2203, 2275
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 1858
BstNI	CCWGG	7 cut(s)	572, 966, 1536, 1723, 1752, 1952, 2115
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	4 cut(s)	458, 716, 2253, 2273
BstV2I	GAAGAC	2 cut(s)	1227, 1611
BstX2I	RGATCY	4 cut(s)	328, 1633, 1699, 2203
BstXI	CCANNNNNNTGG	1 cut(s)	1630
BstYI	RGATCY	4 cut(s)	328, 1633, 1699, 2203
Bsu15I	ATCGAT	1 cut(s)	1929
Bsu36I	CCTNAGG	1 cut(s)	1770
BsuRI	GGCC	7 cut(s)	484, 570, 833, 887, 963, 1622, 1775
BsuTUI	ATCGAT	1 cut(s)	1929
BtsCI	GGATG	5 cut(s)	30, 268, 373, 637, 1664
BtsIMutI	CAGTG	2 cut(s)	205, 626
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	727, 1560, 1898
CfoI	GCGC	1 cut(s)	1863
Cfr13I	GGNCC	5 cut(s)	123, 568, 886, 962, 1774
Cfr9I	CCCGGG	1 cut(s)	1111
ClaI	ATCGAT	1 cut(s)	1929
Csp6I	GTAC	5 cut(s)	341, 879, 1580, 1599, 1717
CspCI	CAANNNNNGTGG	2 cut(s)	1122, 1157
CviAII	CATG	9 cut(s)	252, 383, 767, 1478, 1521, 1577, 1618, 1624, 1710
CviQI	GTAC	5 cut(s)	341, 879, 1580, 1599, 1717
DdeI	CTNAG	8 cut(s)	59, 207, 419, 687, 1770, 1934, 2069, 2131
DpnI	GATC	9 cut(s)	330, 702, 1518, 1635, 1701, 1904, 1932, 2205, 2277
DpnII	GATC	9 cut(s)	328, 700, 1516, 1633, 1699, 1902, 1930, 2203, 2275
EaeI	YGGCCR	2 cut(s)	831, 1620
Eam1104I	CTCTTC	2 cut(s)	715, 2214
EarI	CTCTTC	2 cut(s)	715, 2214
Ecl136II	GAGCTC	1 cut(s)	1075
Eco24I	GRGCYC	2 cut(s)	1077, 1190
Eco31I	GGTCTC	1 cut(s)	2184
Eco32I	GATATC	1 cut(s)	1336
Eco47I	GGWCC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	1075
Eco57I	CTGAAG	4 cut(s)	830, 1454, 1623, 1818
Eco81I	CCTNAGG	1 cut(s)	1770
Eco88I	CYCGRG	4 cut(s)	36, 1111, 1988, 2183
EcoICRI	GAGCTC	1 cut(s)	1075
EcoO109I	RGGNCCY	3 cut(s)	568, 886, 1774
EcoRI	GAATTC	1 cut(s)	2257
EcoRII	CCWGG	7 cut(s)	570, 964, 1534, 1721, 1750, 1950, 2113
EcoRV	GATATC	1 cut(s)	1336
EcoT22I	ATGCAT	3 cut(s)	373, 1479, 1683
EcoT38I	GRGCYC	2 cut(s)	1077, 1190
Esp3I	CGTCTC	1 cut(s)	710
FaeI	CATG	9 cut(s)	255, 386, 770, 1481, 1524, 1580, 1621, 1627, 1713
FalI	AAGNNNNNCTT	2 cut(s)	2230, 2262
FatI	CATG	9 cut(s)	251, 382, 766, 1477, 1520, 1576, 1617, 1623, 1709
FauNDI	CATATG	1 cut(s)	1857
FblI	GTMKAC	1 cut(s)	1106
Fnu4HI	GCNGC	7 cut(s)	6, 447, 730, 2242, 2287, 2290, 2313
FokI	GGATG	5 cut(s)	17, 275, 380, 644, 1651
FriOI	GRGCYC	2 cut(s)	1077, 1190
Fsp4HI	GCNGC	7 cut(s)	6, 447, 730, 2242, 2287, 2290, 2313
FspBI	CTAG	2 cut(s)	939, 1697
FspI	TGCGCA	1 cut(s)	1862
GlaI	GCGC	1 cut(s)	1862
GluI	GCNGC	7 cut(s)	6, 447, 730, 2242, 2287, 2290, 2313
GsuI	CTGGAG	2 cut(s)	1176, 1734
HaeIII	GGCC	7 cut(s)	484, 570, 833, 887, 963, 1622, 1775
HapII	CCGG	3 cut(s)	82, 485, 1112
HhaI	GCGC	1 cut(s)	1863
Hin1II	CATG	9 cut(s)	255, 386, 770, 1481, 1524, 1580, 1621, 1627, 1713
Hin6I	GCGC	1 cut(s)	1861
HinP1I	GCGC	1 cut(s)	1861
HincII	GTYRAC	1 cut(s)	1732
HindII	GTYRAC	1 cut(s)	1732
HindIII	AAGCTT	4 cut(s)	209, 723, 2057, 2189
HpaII	CCGG	3 cut(s)	82, 485, 1112
HphI	GGTGA	4 cut(s)	956, 1127, 1244, 1466
Hpy166II	GTNNAC	5 cut(s)	274, 803, 1107, 1719, 1732
Hpy8I	GTNNAC	5 cut(s)	274, 803, 1107, 1719, 1732
HpyAV	CCTTC	7 cut(s)	194, 805, 1223, 1678, 1754, 2043, 2175
HpyCH4III	ACNGT	2 cut(s)	300, 1547
HpyCH4IV	ACGT	3 cut(s)	391, 1653, 1924
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 1858
HpyF3I	CTNAG	8 cut(s)	59, 207, 419, 687, 1770, 1934, 2069, 2131
HpySE526I	ACGT	3 cut(s)	391, 1653, 1924
Hsp92II	CATG	9 cut(s)	255, 386, 770, 1481, 1524, 1580, 1621, 1627, 1713
HspAI	GCGC	1 cut(s)	1861
Kzo9I	GATC	9 cut(s)	328, 700, 1516, 1633, 1699, 1902, 1930, 2203, 2275
LguI	GCTCTTC	1 cut(s)	2214
LmnI	GCTCC	4 cut(s)	1193, 1914, 2090, 2268
Lsp1109I	GCAGC	4 cut(s)	458, 716, 2253, 2273
LweI	GCATC	6 cut(s)	358, 1378, 1464, 1668, 1673, 2100
MaeI	CTAG	2 cut(s)	939, 1697
MaeII	ACGT	3 cut(s)	391, 1653, 1924
MaeIII	GTNAC	2 cut(s)	982, 1937
MalI	GATC	9 cut(s)	330, 702, 1518, 1635, 1701, 1904, 1932, 2205, 2277
MbiI	CCGCTC	1 cut(s)	2292
MboI	GATC	9 cut(s)	328, 700, 1516, 1633, 1699, 1902, 1930, 2203, 2275
MflI	RGATCY	4 cut(s)	328, 1633, 1699, 2203
MhlI	GDGCHC	5 cut(s)	276, 420, 1077, 1190, 1950
MlsI	TGGCCA	2 cut(s)	833, 1622
MluNI	TGGCCA	2 cut(s)	833, 1622
MlyI	GAGTC	4 cut(s)	395, 497, 1987, 2309
MmeI	TCCRAC	3 cut(s)	101, 556, 2006
Mox20I	TGGCCA	2 cut(s)	833, 1622
Mph1103I	ATGCAT	3 cut(s)	373, 1479, 1683
MroXI	GAANNNNTTC	2 cut(s)	392, 1509
MscI	TGGCCA	2 cut(s)	833, 1622
MseI	TTAA	9 cut(s)	501, 603, 1044, 1247, 1527, 1641, 1779, 2226, 2320
MslI	CAYNNNNRTG	4 cut(s)	105, 1365, 1622, 1628
Msp20I	TGGCCA	2 cut(s)	833, 1622
MspCI	CTTAAG	1 cut(s)	2225
MspI	CCGG	3 cut(s)	82, 485, 1112
MvaI	CCWGG	7 cut(s)	572, 966, 1536, 1723, 1752, 1952, 2115
MwoI	GCNNNNNNNGC	2 cut(s)	248, 1858
NciI	CCSGG	3 cut(s)	82, 1112, 1113
NdeI	CATATG	1 cut(s)	1857
NdeII	GATC	9 cut(s)	328, 700, 1516, 1633, 1699, 1902, 1930, 2203, 2275
NlaIII	CATG	9 cut(s)	255, 386, 770, 1481, 1524, 1580, 1621, 1627, 1713
NlaIV	GGNNCC	1 cut(s)	1189
NmuCI	GTSAC	1 cut(s)	1937
NsbI	TGCGCA	1 cut(s)	1862
NsiI	ATGCAT	3 cut(s)	373, 1479, 1683
NspV	TTCGAA	2 cut(s)	720, 1671
PaeR7I	CTCGAG	2 cut(s)	1988, 2183
PaqCI	CACCTGC	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	2214
PdmI	GAANNNNTTC	2 cut(s)	392, 1509
PfeI	GAWTC	8 cut(s)	203, 467, 752, 787, 793, 2047, 2140, 2230
Pfl23II	CGTACG	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	1534
PkrI	GCNGC	7 cut(s)	7, 448, 731, 2243, 2288, 2291, 2314
PleI	GAGTC	4 cut(s)	395, 496, 1986, 2308
PpsI	GAGTC	4 cut(s)	395, 496, 1986, 2308
Ppu21I	YACGTR	1 cut(s)	1654
Psp124BI	GAGCTC	1 cut(s)	1077
Psp1406I	AACGTT	1 cut(s)	391
Psp6I	CCWGG	7 cut(s)	570, 964, 1534, 1721, 1750, 1950, 2113
PspGI	CCWGG	7 cut(s)	570, 964, 1534, 1721, 1750, 1950, 2113
PspLI	CGTACG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	1189
PspPI	GGNCC	5 cut(s)	123, 568, 886, 962, 1774
PsuI	RGATCY	4 cut(s)	328, 1633, 1699, 2203
RsaI	GTAC	5 cut(s)	342, 880, 1581, 1600, 1718
RsaNI	GTAC	5 cut(s)	341, 879, 1580, 1599, 1717
RseI	CAYNNNNRTG	4 cut(s)	105, 1365, 1622, 1628
SacI	GAGCTC	1 cut(s)	1077
SapI	GCTCTTC	1 cut(s)	2214
SaqAI	TTAA	9 cut(s)	501, 603, 1044, 1247, 1527, 1641, 1779, 2226, 2320
SatI	GCNGC	7 cut(s)	6, 447, 730, 2242, 2287, 2290, 2313
Sau3AI	GATC	9 cut(s)	328, 700, 1516, 1633, 1699, 1902, 1930, 2203, 2275
Sau96I	GGNCC	5 cut(s)	123, 568, 886, 962, 1774
SchI	GAGTC	4 cut(s)	395, 497, 1987, 2309
SduI	GDGCHC	5 cut(s)	276, 420, 1077, 1190, 1950
SfaNI	GCATC	6 cut(s)	358, 1378, 1464, 1668, 1673, 2100
Sfr274I	CTCGAG	2 cut(s)	1988, 2183
SfuI	TTCGAA	2 cut(s)	720, 1671
SinI	GGWCC	1 cut(s)	123
SlaI	CTCGAG	2 cut(s)	1988, 2183
SmaI	CCCGGG	1 cut(s)	1113
SmiMI	CAYNNNNRTG	4 cut(s)	105, 1365, 1622, 1628
SmlI	CTYRAG	6 cut(s)	1070, 1874, 1988, 2183, 2225, 2297
SmoI	CTYRAG	6 cut(s)	1070, 1874, 1988, 2183, 2225, 2297
SsiI	CCGC	2 cut(s)	365, 2290
SspI	AATATT	2 cut(s)	1197, 1460
SspMI	CTAG	2 cut(s)	939, 1697
SstI	GAGCTC	1 cut(s)	1077
TaaI	ACNGT	2 cut(s)	300, 1547
TaiI	ACGT	3 cut(s)	394, 1656, 1927
TatI	WGTACW	1 cut(s)	1579
TauI	GCSGC	1 cut(s)	2292
TfiI	GAWTC	8 cut(s)	203, 467, 752, 787, 793, 2047, 2140, 2230
Tru1I	TTAA	9 cut(s)	501, 603, 1044, 1247, 1527, 1641, 1779, 2226, 2320
Tru9I	TTAA	9 cut(s)	501, 603, 1044, 1247, 1527, 1641, 1779, 2226, 2320
TscAI	CASTG	2 cut(s)	205, 633
TseFI	GTSAC	1 cut(s)	1937
TseI	GCWGC	6 cut(s)	5, 446, 729, 2241, 2286, 2312
Tsp45I	GTSAC	1 cut(s)	1937
TspGWI	ACGGA	2 cut(s)	1180, 1438
TspMI	CCCGGG	1 cut(s)	1111
TspRI	CASTG	2 cut(s)	205, 633
Vha464I	CTTAAG	1 cut(s)	2225
VneI	GTGCAC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	7 cut(s)	605, 853, 1253, 1380, 1422, 2097, 2257
XhoI	CTCGAG	2 cut(s)	1988, 2183
XmaI	CCCGGG	1 cut(s)	1111
XmiI	GTMKAC	1 cut(s)	1106
XmnI	GAANNNNTTC	2 cut(s)	392, 1509
XspI	CTAG	2 cut(s)	939, 1697
Zsp2I	ATGCAT	3 cut(s)	373, 1479, 1683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.