Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002600

Physical Location & Seq

Genomic Coordinates Reverse (-)

1077417 .. 1078682

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTTGGTCCAGGACCGCCCAGCTTCAAAAACCTCCAAACCCTCCAAAACCCAGCAACCACTTCACTTTTCTCATCACAAAACCTTGATTTCCCCCAATTGGGTCTCCTTCAATTTCTTCAAGATCGCCACTTTGTCACTCCTAACATTCACCATCGCCACCCTCTTCTTGCTCTACAACTCCAACGACTCCCCCTCCACCTTCCTCTGCTTCAAATCCCACCTCCACGTCCCCAAACCCCTCCAATACCCCACTATCATCTTCGATTCAATCCGACCCATCTCCGATAAGTCCTCCGGTTACGCTTCTTTCAGCTCCGATCGATGGATTGTGGTCTCCGTTTCGGATTACCCTTCCGAGTCACTTCGAAAGCTGGTCAGAGTCAAGGGCTGGCAGGTCCTTGCAATTGGGAATTCGAGGACCCCCGTGGATTGGAGCCTCAAGGGAGTCATTTACTTGTCGATGGATGACCAAGCGAAATTGGAGTTTCGGGTTTTGGACTACCTTCCTTATGAATCTTATGTGCGGAAGAGTGTTGGGTACCTTTTCGCTATCCAGCACGGCGCGAAATTGATATACGATGCTGATGATCGCGGGGATGTGGCGGATGGTGATCTCGGTAAGCACTTTGATTTGAAATTGTCAAATGTGGATGTAATGCAGGAGAGGATTTTACAGTATCCTAATGAAAACCCCAATAGAACTGTTGTGAATCCGTACATTCATTTCGGGCAACGATCAATTTGGCCTAGAGGATTGCCTTTAGAAAATGTAGGTGAAGTTGCGCACGAAGGGTACTATAGTGAAGTATTTGGGGGAATGCAGTACATTCAGCAGGGTATATCGAATGGCTTACCCGATGTGGATTCTGTTTTTTACTTCACAAGAAGGTCGGGTTCAGAAGAGTTCGATATTAGGTTTGATGAACATGCTCCAAAAGTTTCATTACCTCAAGGTATGATGGTGCCGTTGAATTCTTTTAATACGTTGTTTCATTCTAATGCATTTTGGGCTTTGATGCTTCCGGTTTCGGTTAGTACAATGGCTTCTGATGTTTTGAGGGGTTATTGGGCACAAAGAATATTGTGGGAGATTGGTGGTCATGTTGTTGTCTATCCTCCAACTATTTATAGATATGATAAGATTGAAGCATACCCATTTACGGCAGAGAAGGATCTTCACGTAAATGTGGGTCGATTAATCAAGTTCCTGGTTACTTGGATCGATCTAGTAAGATTAGGTTGTTTGATAAAATTTTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

422

Amino Acids

48.22

Weight (kDa)

7.77

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41770 AT3G57420
fragaria_vesca	FvH4_6g23790 FvH4_6g23790 FvH4_7g01460
malus_domestica	MD07G1018300.v1.1 MD12G1073600.v1.1 MD14G1071900.v1.1
prunus_persica	Prupe.2G020200_v2.0.a1 Prupe.7G061300_v2.0.a1
pyrus_communis	pycom07g01440 pycom12g06360 pycom14g06170
rosa_chinensis	RchiOBHm_Chr1g0317301 RchiOBHm_Chr3g0482321
rosa_laevigata	RLG00000023359 RLG00000029570 RLG00000030608
rosa_multiflora	Rmu_co8232473.1_g000001 Rmu_co8457415.1_g000001 Rmu_sc0000135.1_g000005 Rmu_sc0013869.1_g000004 Rmu_sc0015957.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330510 Rroxscaffold_6G00399430 Rroxscaffold_6G00399450 Rroxscaffold_6G00399930
rosa_rugosa	Rorug01G0015700 Rorug03G0195800 Rorug03G0195800
rosa_samantha	Rh1AG027100 Rh1BG023000 Rh1CG025100 Rh1DG046100 Rh3AG247400 Rh3BG281900 Rh3CG278900 Rh3DG274700
rosa_wichuraiana	Rw1G001870 Rw3G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	786
Acc36I	ACCTGC	1 cut(s)	385
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	2 cut(s)	540, 964
AccII	CGCG	2 cut(s)	566, 594
AciI	CCGC	4 cut(s)	16, 526, 594, 605
AclWI	GGATC	2 cut(s)	1182, 1229
AcsI	RAATTY	3 cut(s)	412, 973, 1253
AfaI	GTAC	5 cut(s)	542, 719, 797, 827, 1039
AfiI	CCNNNNNNNGG	5 cut(s)	99, 100, 324, 432, 1162
AgsI	TTSAA	8 cut(s)	27, 112, 121, 214, 270, 637, 973, 1148
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	9, 1209
AluBI	AGCT	3 cut(s)	23, 315, 373
AluI	AGCT	3 cut(s)	23, 315, 373
Alw26I	GTCTC	2 cut(s)	109, 340
AlwI	GGATC	2 cut(s)	1182, 1229
AoxI	GGCC	1 cut(s)	746
ApoI	RAATTY	3 cut(s)	412, 973, 1253
AseI	ATTAAT	1 cut(s)	1199
Asp718I	GGTACC	1 cut(s)	540
AspLEI	GCGC	2 cut(s)	566, 787
AspS9I	GGNCC	4 cut(s)	7, 13, 397, 420
AsuHPI	GGTGA	3 cut(s)	142, 623, 788
AsuII	TTCGAA	1 cut(s)	367
AvaII	GGWCC	4 cut(s)	7, 13, 397, 420
BaeGI	GKGCMC	1 cut(s)	1075
BaeI	ACNNNNGTAYC	2 cut(s)	787, 820
BanI	GGYRCC	2 cut(s)	540, 964
BarI	GAAGNNNNNNTAC	2 cut(s)	1030, 1062
BccI	CCATC	6 cut(s)	161, 287, 318, 457, 602, 955
BceAI	ACGGC	3 cut(s)	577, 952, 1179
BciT130I	CCWGG	2 cut(s)	11, 1211
BciVI	GTATCC	1 cut(s)	690
BcoDI	GTCTC	2 cut(s)	109, 340
BfaI	CTAG	2 cut(s)	750, 1229
BfmI	CTRYAG	1 cut(s)	799
BfuAI	ACCTGC	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	690
Bme1390I	CCNGG	2 cut(s)	11, 1211
Bme18I	GGWCC	4 cut(s)	7, 13, 397, 420
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	4 cut(s)	7, 13, 397, 420
BmiI	GGNNCC	4 cut(s)	422, 437, 542, 966
BmrFI	CCNGG	2 cut(s)	11, 1211
BmsI	GCATC	2 cut(s)	571, 1008
Bpu14I	TTCGAA	1 cut(s)	367
BpuEI	CTTGAG	2 cut(s)	425, 936
Bsa29I	ATCGAT	2 cut(s)	322, 1224
BsaAI	YACGTR	1 cut(s)	1183
BsaBI	GATNNNNATC	1 cut(s)	612
BsaI	GGTCTC	2 cut(s)	109, 340
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	2 cut(s)	296, 1024
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 100, 324, 432, 1162
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	11, 1211
BseCI	ATCGAT	2 cut(s)	322, 1224
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	4 cut(s)	472, 604, 613, 658
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	5 cut(s)	99, 100, 324, 432, 1162
BseSI	GKGCMC	1 cut(s)	1075
BseYI	CCCAGC	2 cut(s)	19, 51
Bsh1236I	CGCG	2 cut(s)	566, 594
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	748
BshNI	GGYRCC	2 cut(s)	540, 964
BshVI	ATCGAT	2 cut(s)	322, 1224
BsiEI	CGRYCG	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	297, 1025
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	5 cut(s)	99, 100, 324, 432, 1162
BsmAI	GTCTC	2 cut(s)	109, 340
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	1 cut(s)	748
Bso31I	GGTCTC	2 cut(s)	109, 340
Bsp119I	TTCGAA	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	1075
Bsp143I	GATC	8 cut(s)	123, 319, 589, 613, 737, 1174, 1221, 1225
BspACI	CCGC	4 cut(s)	16, 526, 594, 605
BspANI	GGCC	1 cut(s)	748
BspDI	ATCGAT	2 cut(s)	322, 1224
BspFNI	CGCG	2 cut(s)	566, 594
BspLI	GGNNCC	4 cut(s)	422, 437, 542, 966
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	2 cut(s)	1182, 1229
BspT104I	TTCGAA	1 cut(s)	367
BspT107I	GGYRCC	2 cut(s)	540, 964
BspTNI	GGTCTC	2 cut(s)	109, 340
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	8 cut(s)	123, 319, 589, 613, 737, 1174, 1221, 1225
Bst2UI	CCWGG	2 cut(s)	11, 1211
Bst4CI	ACNGT	2 cut(s)	678, 706
Bst6I	CTCTTC	3 cut(s)	170, 524, 897
BstBAI	YACGTR	1 cut(s)	1183
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	392
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	472, 604, 613, 658
BstFNI	CGCG	2 cut(s)	566, 594
BstHHI	GCGC	2 cut(s)	566, 787
BstKTI	GATC	8 cut(s)	126, 322, 592, 616, 740, 1177, 1224, 1228
BstMAI	GTCTC	2 cut(s)	109, 340
BstMBI	GATC	8 cut(s)	123, 319, 589, 613, 737, 1174, 1221, 1225
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	1010
BstNI	CCWGG	2 cut(s)	11, 1211
BstNSI	RCATGY	1 cut(s)	932
BstSCI	CCNGG	2 cut(s)	9, 1209
BstSFI	CTRYAG	1 cut(s)	799
BstSLI	GKGCMC	1 cut(s)	1075
BstUI	CGCG	2 cut(s)	566, 594
BstX2I	RGATCY	1 cut(s)	1174
BstYI	RGATCY	1 cut(s)	1174
Bsu15I	ATCGAT	2 cut(s)	322, 1224
BsuI	GTATCC	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	748
BsuTUI	ATCGAT	2 cut(s)	322, 1224
BtgI	CCRYGG	1 cut(s)	426
BtgZI	GCGATG	1 cut(s)	139
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	472, 604, 613, 658
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	392
CfoI	GCGC	2 cut(s)	566, 787
Cfr13I	GGNCC	4 cut(s)	7, 13, 397, 420
ClaI	ATCGAT	2 cut(s)	322, 1224
Csp6I	GTAC	5 cut(s)	541, 718, 796, 826, 1038
CviAII	CATG	2 cut(s)	929, 1103
CviJI	RGCY	9 cut(s)	23, 315, 373, 390, 438, 748, 852, 1013, 1046
CviKI_1	RGCY	9 cut(s)	23, 315, 373, 390, 438, 748, 852, 1013, 1046
CviQI	GTAC	5 cut(s)	541, 718, 796, 826, 1038
DpnI	GATC	8 cut(s)	125, 321, 591, 615, 739, 1176, 1223, 1227
DpnII	GATC	8 cut(s)	123, 319, 589, 613, 737, 1174, 1221, 1225
Eam1104I	CTCTTC	3 cut(s)	170, 524, 897
EarI	CTCTTC	3 cut(s)	170, 524, 897
EciI	GGCGGA	1 cut(s)	620
Eco31I	GGTCTC	2 cut(s)	109, 340
Eco47I	GGWCC	4 cut(s)	7, 13, 397, 420
EcoO109I	RGGNCCY	2 cut(s)	397, 420
EcoRI	GAATTC	2 cut(s)	412, 973
EcoRII	CCWGG	2 cut(s)	9, 1209
EcoT22I	ATGCAT	1 cut(s)	1006
FaeI	CATG	2 cut(s)	932, 1106
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	928, 1102
FauI	CCCGC	1 cut(s)	587
FokI	GGATG	4 cut(s)	479, 611, 620, 665
FspBI	CTAG	2 cut(s)	750, 1229
FspI	TGCGCA	1 cut(s)	786
GlaI	GCGC	2 cut(s)	565, 786
GsaI	CCCAGC	2 cut(s)	23, 55
HaeIII	GGCC	1 cut(s)	748
HapII	CCGG	2 cut(s)	297, 1025
HhaI	GCGC	2 cut(s)	566, 787
Hin1II	CATG	2 cut(s)	932, 1106
Hin6I	GCGC	2 cut(s)	564, 785
HinP1I	GCGC	2 cut(s)	564, 785
HinfI	GANTC	8 cut(s)	188, 266, 359, 381, 447, 515, 712, 866
HpaII	CCGG	2 cut(s)	297, 1025
HphI	GGTGA	3 cut(s)	142, 623, 788
Hpy188I	TCNGA	8 cut(s)	275, 286, 319, 346, 358, 380, 901, 1051
Hpy188III	TCNNGA	1 cut(s)	121
HpyAV	CCTTC	7 cut(s)	118, 211, 363, 515, 785, 882, 1165
HpyCH4III	ACNGT	2 cut(s)	678, 706
HpyCH4IV	ACGT	3 cut(s)	228, 986, 1182
HpyCH4V	TGCA	4 cut(s)	404, 661, 823, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1010
HpySE526I	ACGT	3 cut(s)	228, 986, 1182
Hsp92II	CATG	2 cut(s)	932, 1106
HspAI	GCGC	2 cut(s)	564, 785
KpnI	GGTACC	1 cut(s)	544
Kzo9I	GATC	8 cut(s)	123, 319, 589, 613, 737, 1174, 1221, 1225
LmnI	GCTCC	3 cut(s)	320, 435, 937
LweI	GCATC	2 cut(s)	571, 1008
MaeI	CTAG	2 cut(s)	750, 1229
MaeII	ACGT	3 cut(s)	228, 986, 1182
MaeIII	GTNAC	4 cut(s)	135, 299, 360, 1213
MalI	GATC	8 cut(s)	125, 321, 591, 615, 739, 1176, 1223, 1227
MboI	GATC	8 cut(s)	123, 319, 589, 613, 737, 1174, 1221, 1225
MboII	GAAGA	6 cut(s)	109, 157, 253, 541, 914, 1169
MfeI	CAATTG	2 cut(s)	97, 405
MflI	RGATCY	1 cut(s)	1174
MhlI	GDGCHC	1 cut(s)	1075
MlyI	GAGTC	4 cut(s)	182, 368, 390, 456
MmeI	TCCRAC	3 cut(s)	207, 298, 1145
Mph1103I	ATGCAT	1 cut(s)	1006
MseI	TTAA	2 cut(s)	981, 1199
MslI	CAYNNNNRTG	2 cut(s)	999, 1185
MspI	CCGG	2 cut(s)	297, 1025
MspR9I	CCNGG	2 cut(s)	11, 1211
MunI	CAATTG	2 cut(s)	97, 405
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	2 cut(s)	11, 1211
MvnI	CGCG	2 cut(s)	566, 594
MwoI	GCNNNNNNNGC	1 cut(s)	1010
NdeII	GATC	8 cut(s)	123, 319, 589, 613, 737, 1174, 1221, 1225
NlaIII	CATG	2 cut(s)	932, 1106
NlaIV	GGNNCC	4 cut(s)	422, 437, 542, 966
NmuCI	GTSAC	2 cut(s)	135, 360
NsbI	TGCGCA	1 cut(s)	786
NsiI	ATGCAT	1 cut(s)	1006
NspI	RCATGY	1 cut(s)	932
NspV	TTCGAA	1 cut(s)	367
PctI	GAATGC	1 cut(s)	825
PfeI	GAWTC	4 cut(s)	266, 515, 712, 866
PfoI	TCCNGGA	1 cut(s)	9
Ple19I	CGATCG	1 cut(s)	322
PleI	GAGTC	4 cut(s)	182, 367, 389, 455
PpsI	GAGTC	4 cut(s)	182, 367, 389, 455
Ppu21I	YACGTR	1 cut(s)	1183
PpuMI	RGGWCCY	2 cut(s)	397, 420
PshBI	ATTAAT	1 cut(s)	1199
Psp5II	RGGWCCY	2 cut(s)	397, 420
Psp6I	CCWGG	2 cut(s)	9, 1209
PspFI	CCCAGC	2 cut(s)	19, 51
PspGI	CCWGG	2 cut(s)	9, 1209
PspN4I	GGNNCC	4 cut(s)	422, 437, 542, 966
PspPI	GGNCC	4 cut(s)	7, 13, 397, 420
PspPPI	RGGWCCY	2 cut(s)	397, 420
PsuI	RGATCY	1 cut(s)	1174
PvuI	CGATCG	1 cut(s)	322
RsaI	GTAC	5 cut(s)	542, 719, 797, 827, 1039
RsaNI	GTAC	5 cut(s)	541, 718, 796, 826, 1038
RseI	CAYNNNNRTG	2 cut(s)	999, 1185
SaqAI	TTAA	2 cut(s)	981, 1199
Sau3AI	GATC	8 cut(s)	123, 319, 589, 613, 737, 1174, 1221, 1225
Sau96I	GGNCC	4 cut(s)	7, 13, 397, 420
SchI	GAGTC	4 cut(s)	182, 368, 390, 456
ScrFI	CCNGG	2 cut(s)	11, 1211
SduI	GDGCHC	1 cut(s)	1075
SfaNI	GCATC	2 cut(s)	571, 1008
SfcI	CTRYAG	1 cut(s)	799
SfuI	TTCGAA	1 cut(s)	367
SinI	GGWCC	4 cut(s)	7, 13, 397, 420
SmiMI	CAYNNNNRTG	2 cut(s)	999, 1185
SmlI	CTYRAG	2 cut(s)	440, 951
SmoI	CTYRAG	2 cut(s)	440, 951
SsiI	CCGC	4 cut(s)	16, 526, 594, 605
SspI	AATATT	1 cut(s)	1083
SspMI	CTAG	2 cut(s)	750, 1229
StyD4I	CCNGG	2 cut(s)	9, 1209
TaaI	ACNGT	2 cut(s)	678, 706
TaiI	ACGT	3 cut(s)	231, 989, 1185
TaqI	TCGA	9 cut(s)	264, 322, 367, 416, 461, 845, 909, 1195, 1224
TatI	WGTACW	2 cut(s)	825, 1037
TfiI	GAWTC	4 cut(s)	266, 515, 712, 866
Tru1I	TTAA	2 cut(s)	981, 1199
Tru9I	TTAA	2 cut(s)	981, 1199
TseFI	GTSAC	2 cut(s)	135, 360
Tsp45I	GTSAC	2 cut(s)	135, 360
TspDTI	ATGAA	6 cut(s)	528, 702, 713, 933, 939, 983
TspGWI	ACGGA	2 cut(s)	328, 705
VpaK11BI	GGWCC	4 cut(s)	7, 13, 397, 420
VspI	ATTAAT	1 cut(s)	1199
XapI	RAATTY	3 cut(s)	412, 973, 1253
XceI	RCATGY	1 cut(s)	932
XspI	CTAG	2 cut(s)	750, 1229
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.