Rorug01G0015700

STELLO glycosyltransferases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002600
Physical Location & Seq
Reverse (-)
2772499 .. 2773059
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0015700.1

Sequence Viewer

Length: 561 bp
ATGGCTAAGCTGTGGAAAGCTATATGGGGAGCAAAGGTCCCAGGGAAGGTAGCAGTGCATGCATGGCGGTGTTGTACCGGTATCCTACCAATTAGAGCTAATTTGCAGCGCAAAGGTTATCTAGGTGATATGACATGCTTGATGTGTAACCATCCAATGGAAGATAACTTACACTTATTTCTTCATTGTCCGTATGCTCAAGAGACGTGGCATGCTGCCTCTATTAGCATGCAGGTGCCAGCCAATTTGACATTCCAAGAGTACTTTTTCTTGCAATTAGCGATTTCTGTTTCAAAGGATGGTTTTGCTAAAGTTCTTATGATTGTGTGGGCTCTTTGGAAGAATCGGAATAGCCAATTATGGGACAATACAAAGCAGCGACCAAGTGAGGCGTCTATGCTTAGTTTGGGCTGGCTTCATGAATTTTCTAAAGCTAATGCAATATGCAGCGGAGGCATTAGGTCCCAGCAGCAAGCATGGATGAAACCTCCAACTGGTTGGAAGAAATGTAATAGCGATGGTGCTTTCACGGCTGGCACACATCGAGGGGGAGTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
STELLO

Protein Analysis

186

Amino Acids

20.88

Weight (kDa)

9.48

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 3 - 70 6.4e-16 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 235
AccB7I CCANNNNNTGG 1 cut(s) 157
AciI CCGC 2 cut(s) 67, 450
AcsI RAATTY 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 2 cut(s) 76, 263
AfiI CCNNNNNNNGG 4 cut(s) 46, 157, 361, 494
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 1 cut(s) 294
AjiI CACGTC 1 cut(s) 207
AjnI CCWGG 1 cut(s) 40
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 4 cut(s) 10, 20, 98, 434
AluI AGCT 4 cut(s) 10, 20, 98, 434
Alw26I GTCTC 1 cut(s) 197
ApeKI GCWGC 5 cut(s) 106, 215, 376, 447, 469
ApoI RAATTY 1 cut(s) 422
AsiGI ACCGGT 1 cut(s) 77
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 37, 462
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 2 cut(s) 37, 462
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbvI GCAGC 5 cut(s) 118, 202, 388, 459, 481
BccI CCATC 3 cut(s) 159, 293, 512
BceAI ACGGC 1 cut(s) 546
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 223
BfuI GTATCC 1 cut(s) 92
BisI GCNGC 5 cut(s) 107, 216, 377, 448, 470
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 5 cut(s) 108, 217, 378, 449, 471
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 2 cut(s) 37, 462
BmgBI CACGTC 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 37, 462
BmiI GGNNCC 3 cut(s) 39, 237, 464
BmrFI CCNGG 1 cut(s) 42
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 40, 41
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 157, 361, 494
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 499
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 40, 41
BseGI GGATG 3 cut(s) 151, 304, 486
BseLI CCNNNNNNNGG 4 cut(s) 46, 157, 361, 494
BseNI ACTGG 1 cut(s) 499
BseXI GCAGC 5 cut(s) 118, 202, 388, 459, 481
BseYI CCCAGC 1 cut(s) 465
BshNI GGYRCC 1 cut(s) 235
BshTI ACCGGT 1 cut(s) 77
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 3 cut(s) 23, 377, 448
BslI CCNNNNNNNGG 4 cut(s) 46, 157, 361, 494
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 3 cut(s) 23, 377, 448
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 67, 450
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 39, 237, 464
BspMI ACCTGC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 499
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 40, 41
BssNI GRCGYC 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 7 cut(s) 60, 213, 230, 240, 413, 474, 535
BstDEI CTNAG 2 cut(s) 6, 401
BstF5I GGATG 3 cut(s) 151, 304, 486
BstHHI GCGC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 4 cut(s) 59, 64, 453, 530
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 4 cut(s) 62, 138, 215, 232
BstSCI CCNGG 1 cut(s) 40
BstV1I GCAGC 5 cut(s) 118, 202, 388, 459, 481
BstXI CCANNNNNNTGG 1 cut(s) 498
BsuI GTATCC 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 531
BtrI CACGTC 1 cut(s) 207
BtsCI GGATG 3 cut(s) 151, 304, 486
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 7 cut(s) 60, 213, 230, 240, 413, 474, 535
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 37, 462
CseI GACGC 1 cut(s) 381
Csp6I GTAC 2 cut(s) 75, 262
CspAI ACCGGT 1 cut(s) 77
CspCI CAANNNNNGTGG 2 cut(s) 188, 223
CviAII CATG 7 cut(s) 59, 63, 135, 212, 229, 419, 477
CviQI GTAC 2 cut(s) 75, 262
DdeI CTNAG 2 cut(s) 6, 401
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 37, 462
EcoO109I RGGNCCY 2 cut(s) 37, 462
EcoRII CCWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 7 cut(s) 62, 66, 138, 215, 232, 422, 480
FaqI GGGAC 3 cut(s) 23, 377, 448
FatI CATG 7 cut(s) 58, 62, 134, 211, 228, 418, 476
Fnu4HI GCNGC 5 cut(s) 107, 216, 377, 448, 470
FokI GGATG 3 cut(s) 138, 311, 493
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 5 cut(s) 107, 216, 377, 448, 470
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 110
GluI GCNGC 5 cut(s) 107, 216, 377, 448, 470
GsaI CCCAGC 1 cut(s) 469
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 381
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 7 cut(s) 62, 66, 138, 215, 232, 422, 480
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 2 cut(s) 200, 419
HpyAV CCTTC 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 7 cut(s) 58, 62, 106, 232, 274, 440, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 64, 453, 530
HpyF3I CTNAG 2 cut(s) 6, 401
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 7 cut(s) 62, 66, 138, 215, 232, 422, 480
HspAI GCGC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 9 cut(s) 27, 54, 91, 218, 252, 397, 479, 480, 519
Lsp1109I GCAGC 5 cut(s) 118, 202, 388, 459, 481
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 4 cut(s) 173, 173, 352, 514
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 6 cut(s) 90, 100, 244, 275, 356, 422
MmeI TCCRAC 2 cut(s) 479, 515
MnlI CCTC 5 cut(s) 229, 382, 446, 498, 539
Mph1103I ATGCAT 1 cut(s) 64
MslI CAYNNNNRTG 2 cut(s) 67, 233
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 4 cut(s) 59, 64, 453, 530
NlaIII CATG 7 cut(s) 62, 66, 138, 215, 232, 422, 480
NlaIV GGNNCC 3 cut(s) 39, 237, 464
NsiI ATGCAT 1 cut(s) 64
NspI RCATGY 4 cut(s) 62, 138, 215, 232
PaeI GCATGC 3 cut(s) 62, 215, 232
PagI TCATGA 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 223
PasI CCCWGGG 1 cut(s) 41
PfeI GAWTC 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 157
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 5 cut(s) 108, 217, 378, 449, 471
PpuMI RGGWCCY 2 cut(s) 37, 462
Psp5II RGGWCCY 2 cut(s) 37, 462
Psp6I CCWGG 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 465
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 3 cut(s) 39, 237, 464
PspPI GGNCC 2 cut(s) 37, 462
PspPPI RGGWCCY 2 cut(s) 37, 462
RsaI GTAC 2 cut(s) 76, 263
RsaNI GTAC 2 cut(s) 75, 262
RseI CAYNNNNRTG 2 cut(s) 67, 233
SatI GCNGC 5 cut(s) 107, 216, 377, 448, 470
Sau96I GGNCC 2 cut(s) 37, 462
ScaI AGTACT 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 334
SinI GGWCC 2 cut(s) 37, 462
SmiMI CAYNNNNRTG 2 cut(s) 67, 233
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SphI GCATGC 3 cut(s) 62, 215, 232
Sse9I AATT 6 cut(s) 90, 100, 244, 275, 356, 422
SsiI CCGC 2 cut(s) 67, 450
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 40
TaiI ACGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 544
TasI AATT 6 cut(s) 90, 100, 244, 275, 356, 422
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 1 cut(s) 343
TscAI CASTG 1 cut(s) 60
TseI GCWGC 5 cut(s) 106, 215, 376, 447, 469
TspDTI ATGAA 4 cut(s) 173, 407, 435, 497
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 60
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 37, 462
XapI RAATTY 1 cut(s) 422
XceI RCATGY 4 cut(s) 62, 138, 215, 232
XspI CTAG 1 cut(s) 122
ZrmI AGTACT 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.