Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002600

Physical Location & Seq

Genomic Coordinates Forward (+)

6015273 .. 6018047

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGTGCCTGTTAATTCTTTCAATACAATTTACCATTCATCGGCATTTTGGGGTTTGATGCTTCCTGTTTCTGTTAGCACAATGGCTTCTGATATATTAAGGGGTTACTGGGGGCAGAGGCTTTTGTGGGAAATAGGTGGATATGTTGTAGTTTATCCCCCAACTGTTCATCGGTATGACAGAATTCAGGCATACCCCTTTTCTGAAGAGAAGGATCTTCATGTTAGTGTAGGACGTTTGATCAAATTTTTGGTTTCCTGGAGATCGGGTAAGCATAGGTTGTTTGAAAAGATTTTGGAGTTAAGTTTTGCCATGGCAGAAGAGGGGTTTTGGACCGAGAAGGATCTGAAGTATACTGCTGCTTGGCTTCATGACTTAATTGCTGTAGGGTATCAGCAGCCTAGATTAATGTCATTGGAATTGGATCGGCCTCGTGCAAATATTGGTCATGGGGATACAAAAGAGTTTGTCCCGCAAAAGTTTCCATCTGTTCATCTTGGAGTTGAGGAATCAGGAACAGTGAACTATGAAATCGGAAATTTGATTAGATGGAGGAAGAATTTTGGGAATGTTGTGCTTATCATGTTTTGCAGTGGACCTGTGGAACGTACTGCTGTGGAATGGAGATTGCTTTATGGGCGGATATTTAAAACTGTGATCATTTTGTCTGATCTAAAGAACACTGACCTTGCTGTTGAAGAAGGAAAATTGGAGAATGTATACAAGTACATGCCCAAAATATTTGATCGATATTCCGGTGCAGATGGATTTTTATTCGTTCAGGACAATACTATTCTTAATTACTGGAATCTTCTACAGGCAGACAAAACTAAATTGTGGATTACAAATGAGGTATCCAAGTCCTGGAGTATAGTATCAACAAACGACAACTCAGATTGGTTTTCAAAGCAAGCGGGCATGGTAAAGAAGGTTGTTAGTATGATGCCAGTTCACTTCCAAGTCAGTTATAAGAACAGTGTAACCAGTCACAAGAGCATCACAATTTGCAGTTCTGAGGTGTTCTACATTCCTCGTCGGTTTGTGGCTGACTTTGTCGATCTTGTTAATCTAGTCGGAAACCTAGAAATTCATCACAAGGTTGCCATTCCAATGTTCTTTCAAGCAATAGATTCACCTCAGAACTTTGACTCAGTGCTCAGTACAATGATCTATGAGGAACAACCACCTTCTACTAATTCTTCATCCTTATATTCGGCTAAAGTTCCCGCGGTTCACCCATGCAATGTGACTAGCGAACAAGAGTTCATTAAACTAATAAGAGTAATGGCAGAAGGTGACCCTCTCCTAATGGAGTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009832 GO:0009889 GO:0009987 GO:0010383 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016043 GO:0016051 GO:0019222 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0051128 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098791 GO:1901576 GO:1903338 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

441

Amino Acids

50.47

Weight (kDa)

6.47

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41770 AT3G57420
fragaria_vesca	FvH4_6g23790 FvH4_6g23790 FvH4_7g01460
malus_domestica	MD07G1018300.v1.1 MD12G1073600.v1.1 MD14G1071900.v1.1
prunus_persica	Prupe.2G020200_v2.0.a1 Prupe.7G061300_v2.0.a1
pyrus_communis	pycom07g01440 pycom12g06360 pycom14g06170
rosa_chinensis	RchiOBHm_Chr1g0317301 RchiOBHm_Chr3g0482321
rosa_laevigata	RLG00000023359 RLG00000029570 RLG00000030608
rosa_multiflora	Rmu_co8232473.1_g000001 Rmu_co8457415.1_g000001 Rmu_sc0000135.1_g000005 Rmu_sc0013869.1_g000004 Rmu_sc0015957.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330510 Rroxscaffold_6G00399430 Rroxscaffold_6G00399450 Rroxscaffold_6G00399930
rosa_rugosa	Rorug01G0015700 Rorug03G0195800 Rorug03G0195800
rosa_samantha	Rh1AG027100 Rh1BG023000 Rh1CG025100 Rh1DG046100 Rh3AG247400 Rh3BG281900 Rh3CG278900 Rh3DG274700
rosa_wichuraiana	Rw1G001870 Rw3G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	969
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	864
AccI	GTMKAC	2 cut(s)	353, 720
AccII	CGCG	1 cut(s)	1229
AciI	CCGC	5 cut(s)	473, 640, 914, 1227, 1229
AclWI	GGATC	3 cut(s)	222, 351, 432
AcsI	RAATTY	5 cut(s)	183, 245, 538, 559, 1086
AcuI	CTGAAG	2 cut(s)	225, 368
AfaI	GTAC	3 cut(s)	610, 728, 1162
AfiI	CCNNNNNNNGG	2 cut(s)	40, 864
AgsI	TTSAA	5 cut(s)	22, 287, 698, 906, 1121
AjnI	CCWGG	2 cut(s)	257, 863
Alw21I	GWGCWC	1 cut(s)	1158
AlwI	GGATC	3 cut(s)	222, 351, 432
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	359, 397
ApoI	RAATTY	5 cut(s)	183, 245, 538, 559, 1086
AseI	ATTAAT	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	333, 596
AsuHPI	GGTGA	3 cut(s)	1125, 1226, 1307
AvaII	GGWCC	2 cut(s)	333, 596
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	1158
BbvI	GCAGC	2 cut(s)	346, 409
BccI	CCATC	3 cut(s)	493, 543, 758
BciT130I	CCWGG	2 cut(s)	259, 865
BciVI	GTATCC	2 cut(s)	448, 865
BclI	TGATCA	2 cut(s)	240, 657
BfaI	CTAG	4 cut(s)	402, 1070, 1082, 1251
BfmI	CTRYAG	2 cut(s)	384, 815
BfuI	GTATCC	2 cut(s)	448, 865
BisI	GCNGC	2 cut(s)	360, 398
BlsI	GCNGC	2 cut(s)	361, 399
Bme1390I	CCNGG	2 cut(s)	259, 865
Bme18I	GGWCC	2 cut(s)	333, 596
BmgT120I	GGNCC	2 cut(s)	333, 596
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	259, 865
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	3 cut(s)	48, 933, 1005
BmuI	ACTGGG	1 cut(s)	118
BpmI	CTGGAG	2 cut(s)	280, 886
Bsa29I	ATCGAT	1 cut(s)	748
BsaJI	CCNNGG	2 cut(s)	312, 1227
BsaWI	WCCGGW	1 cut(s)	755
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 864
Bse1I	ACTGG	4 cut(s)	113, 809, 947, 984
Bse3DI	GCAATG	1 cut(s)	1249
BseBI	CCWGG	2 cut(s)	259, 865
BseCI	ATCGAT	1 cut(s)	748
BseDI	CCNNGG	2 cut(s)	312, 1227
BseGI	GGATG	1 cut(s)	1202
BseLI	CCNNNNNNNGG	2 cut(s)	40, 864
BseMI	GCAATG	1 cut(s)	1249
BseMII	CTCAG	5 cut(s)	906, 1005, 1151, 1164, 1171
BseNI	ACTGG	4 cut(s)	113, 809, 947, 984
BseXI	GCAGC	2 cut(s)	346, 409
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	1229
BshFI	GGCC	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	1158
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	40, 864
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	1158
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	5 cut(s)	473, 640, 914, 1227, 1229
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	5 cut(s)	905, 1006, 1150, 1163, 1170
BspDI	ATCGAT	1 cut(s)	748
BspFNI	CGCG	1 cut(s)	1229
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	222, 351, 432
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	1249
BsrI	ACTGG	4 cut(s)	113, 809, 947, 984
BssECI	CCNNGG	2 cut(s)	312, 1227
BssNAI	GTATAC	2 cut(s)	354, 721
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	312
Bst1107I	GTATAC	2 cut(s)	354, 721
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	259, 865
Bst4CI	ACNGT	4 cut(s)	166, 520, 655, 977
Bst6I	CTCTTC	2 cut(s)	201, 315
BstC8I	GCNNGC	2 cut(s)	912, 916
BstDEI	CTNAG	5 cut(s)	892, 1014, 1137, 1150, 1157
BstDSI	CCRYGG	2 cut(s)	312, 1227
BstEII	GGTNACC	1 cut(s)	1295
BstF5I	GGATG	1 cut(s)	1202
BstFNI	CGCG	1 cut(s)	1229
BstMWI	GCNNNNNNNGC	1 cut(s)	637
BstNI	CCWGG	2 cut(s)	259, 865
BstNSI	RCATGY	1 cut(s)	733
BstPI	GGTNACC	1 cut(s)	1295
BstSCI	CCNGG	2 cut(s)	257, 863
BstSFI	CTRYAG	2 cut(s)	384, 815
BstUI	CGCG	1 cut(s)	1229
BstV1I	GCAGC	2 cut(s)	346, 409
BstX2I	RGATCY	2 cut(s)	214, 343
BstYI	RGATCY	2 cut(s)	214, 343
BstZ17I	GTATAC	2 cut(s)	354, 721
Bsu15I	ATCGAT	1 cut(s)	748
BsuI	GTATCC	2 cut(s)	448, 865
BsuRI	GGCC	1 cut(s)	430
BsuTUI	ATCGAT	1 cut(s)	748
BtgI	CCRYGG	2 cut(s)	312, 1227
BtsCI	GGATG	1 cut(s)	1202
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	5 cut(s)	525, 598, 681, 982, 1158
Cac8I	GCNNGC	2 cut(s)	912, 916
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	333, 596
Cfr42I	CCGCGG	1 cut(s)	1230
ClaI	ATCGAT	1 cut(s)	748
Csp6I	GTAC	3 cut(s)	609, 727, 1161
CviAII	CATG	8 cut(s)	221, 313, 371, 449, 583, 730, 919, 1239
CviJI	RGCY	7 cut(s)	86, 121, 367, 400, 430, 1046, 1217
CviKI_1	RGCY	7 cut(s)	86, 121, 367, 400, 430, 1046, 1217
CviQI	GTAC	3 cut(s)	609, 727, 1161
DdeI	CTNAG	5 cut(s)	892, 1014, 1137, 1150, 1157
DraI	TTTAAA	1 cut(s)	649
Eam1104I	CTCTTC	2 cut(s)	201, 315
EarI	CTCTTC	2 cut(s)	201, 315
EciI	GGCGGA	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	333, 596
Eco57I	CTGAAG	2 cut(s)	225, 368
Eco91I	GGTNACC	1 cut(s)	1295
EcoO65I	GGTNACC	1 cut(s)	1295
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	257, 863
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	8 cut(s)	224, 316, 374, 452, 586, 733, 922, 1242
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	8 cut(s)	220, 312, 370, 448, 582, 729, 918, 1238
FauI	CCCGC	3 cut(s)	480, 907, 1234
FbaI	TGATCA	2 cut(s)	240, 657
FblI	GTMKAC	2 cut(s)	353, 720
Fnu4HI	GCNGC	2 cut(s)	360, 398
FokI	GGATG	1 cut(s)	1189
Fsp4HI	GCNGC	2 cut(s)	360, 398
FspBI	CTAG	4 cut(s)	402, 1070, 1082, 1251
GluI	GCNGC	2 cut(s)	360, 398
GsuI	CTGGAG	2 cut(s)	280, 886
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	1 cut(s)	756
Hin1II	CATG	8 cut(s)	224, 316, 374, 452, 586, 733, 922, 1242
HinfI	GANTC	4 cut(s)	509, 808, 1130, 1148
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	3 cut(s)	1125, 1226, 1307
Hpy166II	GTNNAC	6 cut(s)	354, 523, 596, 721, 952, 1234
Hpy188I	TCNGA	9 cut(s)	91, 205, 348, 536, 670, 895, 1015, 1076, 1140
Hpy188III	TCNNGA	3 cut(s)	371, 513, 782
Hpy8I	GTNNAC	6 cut(s)	354, 523, 596, 721, 952, 1234
Hpy99I	CGWCG	1 cut(s)	1038
HpyAV	CCTTC	6 cut(s)	205, 334, 695, 922, 1197, 1286
HpyCH4III	ACNGT	4 cut(s)	166, 520, 655, 977
HpyCH4IV	ACGT	2 cut(s)	235, 607
HpyCH4V	TGCA	5 cut(s)	437, 591, 761, 1008, 1242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	637
HpyF3I	CTNAG	5 cut(s)	892, 1014, 1137, 1150, 1157
HpySE526I	ACGT	2 cut(s)	235, 607
Hsp92II	CATG	8 cut(s)	224, 316, 374, 452, 586, 733, 922, 1242
Ksp22I	TGATCA	2 cut(s)	240, 657
KspI	CCGCGG	1 cut(s)	1230
Lsp1109I	GCAGC	2 cut(s)	346, 409
LweI	GCATC	3 cut(s)	48, 933, 1005
MaeI	CTAG	4 cut(s)	402, 1070, 1082, 1251
MaeII	ACGT	2 cut(s)	235, 607
MaeIII	GTNAC	5 cut(s)	104, 979, 986, 1246, 1295
MboII	GAAGA	7 cut(s)	209, 218, 332, 568, 710, 803, 1191
MflI	RGATCY	2 cut(s)	214, 343
MhlI	GDGCHC	1 cut(s)	1158
MlyI	GAGTC	1 cut(s)	1142
MmeI	TCCRAC	1 cut(s)	1054
MseI	TTAA	9 cut(s)	12, 98, 302, 377, 407, 648, 798, 1065, 1269
MslI	CAYNNNNRTG	3 cut(s)	174, 225, 1109
MspA1I	CMGCKG	1 cut(s)	1229
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	2 cut(s)	259, 865
MvaI	CCWGG	2 cut(s)	259, 865
MvnI	CGCG	1 cut(s)	1229
MwoI	GCNNNNNNNGC	1 cut(s)	637
NcoI	CCATGG	1 cut(s)	312
NlaIII	CATG	8 cut(s)	224, 316, 374, 452, 586, 733, 922, 1242
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	986, 1246, 1295
NspI	RCATGY	1 cut(s)	733
PagI	TCATGA	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	509, 808, 1130
PflFI	GACNNNGTC	1 cut(s)	1052
PflMI	CCANNNNNTGG	1 cut(s)	864
PfoI	TCCNGGA	2 cut(s)	257, 863
PkrI	GCNGC	2 cut(s)	361, 399
PleI	GAGTC	1 cut(s)	1142
PpsI	GAGTC	1 cut(s)	1142
PshBI	ATTAAT	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	969
Psp6I	CCWGG	2 cut(s)	257, 863
PspEI	GGTNACC	1 cut(s)	1295
PspGI	CCWGG	2 cut(s)	257, 863
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	333, 596
PsuI	RGATCY	2 cut(s)	214, 343
PsyI	GACNNNGTC	1 cut(s)	1052
RsaI	GTAC	3 cut(s)	610, 728, 1162
RsaNI	GTAC	3 cut(s)	609, 727, 1161
RseI	CAYNNNNRTG	3 cut(s)	174, 225, 1109
SacII	CCGCGG	1 cut(s)	1230
SaqAI	TTAA	9 cut(s)	12, 98, 302, 377, 407, 648, 798, 1065, 1269
SatI	GCNGC	2 cut(s)	360, 398
Sau96I	GGNCC	2 cut(s)	333, 596
SchI	GAGTC	1 cut(s)	1142
ScrFI	CCNGG	2 cut(s)	259, 865
SduI	GDGCHC	1 cut(s)	1158
SfaNI	GCATC	3 cut(s)	48, 933, 1005
SfcI	CTRYAG	2 cut(s)	384, 815
Sfr303I	CCGCGG	1 cut(s)	1230
SgrBI	CCGCGG	1 cut(s)	1230
SinI	GGWCC	2 cut(s)	333, 596
SmiMI	CAYNNNNRTG	3 cut(s)	174, 225, 1109
SsiI	CCGC	5 cut(s)	473, 640, 914, 1227, 1229
SspI	AATATT	2 cut(s)	442, 741
SspMI	CTAG	4 cut(s)	402, 1070, 1082, 1251
StyD4I	CCNGG	2 cut(s)	257, 863
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	4 cut(s)	166, 520, 655, 977
TaiI	ACGT	2 cut(s)	238, 610
TaqI	TCGA	2 cut(s)	748, 1056
TaqII	GACCGA	1 cut(s)	350
TatI	WGTACW	2 cut(s)	726, 1160
TfiI	GAWTC	3 cut(s)	509, 808, 1130
Tru1I	TTAA	9 cut(s)	12, 98, 302, 377, 407, 648, 798, 1065, 1269
Tru9I	TTAA	9 cut(s)	12, 98, 302, 377, 407, 648, 798, 1065, 1269
TscAI	CASTG	5 cut(s)	525, 598, 688, 982, 1158
TseFI	GTSAC	3 cut(s)	986, 1246, 1295
TseI	GCWGC	2 cut(s)	359, 397
Tsp45I	GTSAC	3 cut(s)	986, 1246, 1295
TspDTI	ATGAA	9 cut(s)	27, 158, 209, 359, 482, 543, 1079, 1191, 1255
TspRI	CASTG	5 cut(s)	525, 598, 688, 982, 1158
Tth111I	GACNNNGTC	1 cut(s)	1052
Van91I	CCANNNNNTGG	1 cut(s)	864
VpaK11BI	GGWCC	2 cut(s)	333, 596
VspI	ATTAAT	1 cut(s)	407
XapI	RAATTY	5 cut(s)	183, 245, 538, 559, 1086
XceI	RCATGY	1 cut(s)	733
XmiI	GTMKAC	2 cut(s)	353, 720
XspI	CTAG	4 cut(s)	402, 1070, 1082, 1251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.