Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002600

Physical Location & Seq

Genomic Coordinates Reverse (-)

21330136 .. 21334275

Gene Structure 4140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTCTGCAGTGGCCCTGTGGAACGTACTGCTCTTGAATGGAGATTGCTTTATGGGAGGATATTCAAAACTGTGATCATGTTGTCAGTATCGAAGAATCTAGACCTTGCTGTTGAAGAAGGAAAACTGGAGAATGTTTACAAGTACCTACCCAAAATATTTGATCGATATTCTGGTGCAGACGGATTTTTATTCCTTCACGACGACACTATTCTTAATTACTGGAATCTTCTACAGGCAGGACAAAAACAAATTATGGACCATAAAATGAGGTATCCAATTCTTGGACCAAGGTGTCGCCAAATGACAACTCAGATTGGTTTTCAAAGCAAGCAAGCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009832 GO:0009889 GO:0009987 GO:0010383 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016043 GO:0016051 GO:0019222 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0051128 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098791 GO:1901576 GO:1903338 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

114

Amino Acids

13.4

Weight (kDa)

9.17

Isoelectric Point (pI)

26.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41770 AT3G57420
fragaria_vesca	FvH4_6g23790 FvH4_6g23790 FvH4_7g01460
malus_domestica	MD07G1018300.v1.1 MD12G1073600.v1.1 MD14G1071900.v1.1
prunus_persica	Prupe.2G020200_v2.0.a1 Prupe.7G061300_v2.0.a1
pyrus_communis	pycom07g01440 pycom12g06360 pycom14g06170
rosa_chinensis	RchiOBHm_Chr1g0317301 RchiOBHm_Chr3g0482321
rosa_laevigata	RLG00000023359 RLG00000029570 RLG00000030608
rosa_multiflora	Rmu_co8232473.1_g000001 Rmu_co8457415.1_g000001 Rmu_sc0000135.1_g000005 Rmu_sc0013869.1_g000004 Rmu_sc0015957.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330510 Rroxscaffold_6G00399430 Rroxscaffold_6G00399450 Rroxscaffold_6G00399930
rosa_rugosa	Rorug01G0015700 Rorug03G0195800 Rorug03G0195800
rosa_samantha	Rh1AG027100 Rh1BG023000 Rh1CG025100 Rh1DG046100 Rh3AG247400 Rh3BG281900 Rh3CG278900 Rh3DG274700
rosa_wichuraiana	Rw1G001870 Rw3G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	294
AccB7I	CCANNNNNTGG	1 cut(s)	284
AfaI	GTAC	2 cut(s)	28, 146
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	38, 67, 116, 326
AoxI	GGCC	1 cut(s)	13
AspS9I	GGNCC	3 cut(s)	14, 259, 287
AvaII	GGWCC	2 cut(s)	259, 287
BciVI	GTATCC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	75
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	7, 233
BfuI	GTATCC	1 cut(s)	285
Bme18I	GGWCC	2 cut(s)	259, 287
BmgT120I	GGNCC	3 cut(s)	14, 259, 287
BpmI	CTGGAG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	132, 227
BseCI	ATCGAT	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	132, 227
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	15
BshVI	ATCGAT	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	284
BsnI	GGCC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	75, 163
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	325
BspDI	ATCGAT	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	132, 227
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	2 cut(s)	75, 163
BssT1I	CCWWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	332, 336
BstDEI	CTNAG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	78, 166
BstMBI	GATC	2 cut(s)	75, 163
BstSFI	CTRYAG	2 cut(s)	7, 233
Bsu15I	ATCGAT	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	15
BsuTUI	ATCGAT	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	332, 336
Cfr13I	GGNCC	3 cut(s)	14, 259, 287
ClaI	ATCGAT	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	27, 145
CviAII	CATG	2 cut(s)	79, 339
CviJI	RGCY	1 cut(s)	15
CviKI_1	RGCY	1 cut(s)	15
CviQI	GTAC	2 cut(s)	27, 145
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	77, 165
DpnII	GATC	2 cut(s)	75, 163
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	259, 287
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	2 cut(s)	82, 342
FaiI	YATR	5 cut(s)	54, 80, 257, 264, 340
FatI	CATG	2 cut(s)	78, 338
FbaI	TGATCA	1 cut(s)	75
FspBI	CTAG	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	82, 342
HinfI	GANTC	2 cut(s)	97, 226
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	35, 101, 200
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	113, 206
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	9, 179
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	82, 342
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	75, 163
LpnPI	CCDG	6 cut(s)	30, 113, 159, 208, 221, 225
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	25
MalI	GATC	2 cut(s)	77, 165
MboI	GATC	2 cut(s)	75, 163
MboII	GAAGA	3 cut(s)	106, 128, 221
MluCI	AATT	3 cut(s)	217, 252, 279
MnlI	CCTC	2 cut(s)	51, 264
MseI	TTAA	1 cut(s)	216
NdeII	GATC	2 cut(s)	75, 163
NlaIII	CATG	2 cut(s)	82, 342
PfeI	GAWTC	2 cut(s)	97, 226
PflMI	CCANNNNNTGG	1 cut(s)	284
PspPI	GGNCC	3 cut(s)	14, 259, 287
PstI	CTGCAG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	28, 146
RsaNI	GTAC	2 cut(s)	27, 145
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	75, 163
Sau96I	GGNCC	3 cut(s)	14, 259, 287
SetI	ASST	5 cut(s)	28, 108, 150, 275, 296
SfcI	CTRYAG	2 cut(s)	7, 233
SinI	GGWCC	2 cut(s)	259, 287
Sse9I	AATT	3 cut(s)	217, 252, 279
SspI	AATATT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	92, 166
TasI	AATT	3 cut(s)	217, 252, 279
TfiI	GAWTC	2 cut(s)	97, 226
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	259, 287
XbaI	TCTAGA	1 cut(s)	100
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.