Rh1BG023000

STELLO glycosyltransferases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002600
Physical Location & Seq
Forward (+)
3033132 .. 3037617
4486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG023000.1

Sequence Viewer

Length: 1734 bp
ATGTTGGACCAAGACCGCTCAATCTCAAAACCCACCTCCAAACCCCACCAACTCTTTCTCAACGATCACTTCCTTCAACCCAAAACCTTTGTCTTCCCCAAATGGCTCTCCTTCAACCTCTTCAAGATCGCCACCATTTCAGTCCTAGCCTTCACCATTGCCGCCCTCTTCTTCCTCTACACCAACAATGACTCCCCCACCACCTTCCTCTGTTTCAACTCCAAATCCCACTCCAAGATCCCCACACCCATTGAACTCCCCAGAATCAACTTCAACTCCATCCCACCCATTTCAGATAAGTCCTCCAACTTTGCTTCTTTCACCTCAGATAGATGGATTGTGGTCTCTGTTTCGGATCCTCCATCGGACTCGCTCCGGAAACTGGTCAGGATCAAGGGCTGGCAAGTCCTTGCAATAGGGAATTCGAAGACCCCATTGGATTGGAGCCTCAAGGGAGCTATATACTTGTCAATGGAGGACCAAGCTAAGCTGGAGTTTCGTGTTTTGGAGTATCTTCCTTATGAGTCTCATCTAAGGAAGAGTGTTGGGTACCTTTTCGCCATTCAACATGGGGCGAAAATGATATTCGATGCTGATGATCGTGGTGAAGTGGTTGATGGTGATCTTGGGAAGCACTTTGATTTGAAACTGTCAAAGGTAAGTGTAATGCAGGAGAGGATTTTGCAGTACAGTGATGAAAACCCCAATAGAACAGTTGTGAATCCATACATTCATTTCGGGCAGCGGTCAGTTTGGCCTAGAGGATTGCCTTTGGAGAATGTAGGTGAAATTGGTCATGAAGAGTTCTATGGGGAAGTGTTTGGAGGAATGCAATACATTCAGCAGGGGATATCCAATGGCTTACCGGATGTGGATTCGGTTTTTTACCTCACTAGGAGGTCAGGGTCGGAAGCATTGGATATAAAGTTTGATGAGCATGCTCCAAAAGTTGCCTTACCACAAGGTATGATGGTGCCATTGAATTCTTTTAATACATTGTTTCATTCGAATGCATTTTGGGCTTTGATGCTTCCTGTTTCGGTTAGTACAATGGCTTCTGATGTATTGAGGGGTTATTGGGCACAAAGACTGTTGTGGGAAATTGGTGGTCATGTTGTTGTTTATCCTCCTACTGTACATAGATATGATAATGTTGAAGCATATCCATTTACAGAAGAGAAGGATTTTCATGTAAATGTGGGTCGATTGATTAAGTTTTTAGTTAGTTGGAGATCTGGTAAGGTCAAGTTGTTTGACAGAATCTTGGAATTAAGTTTTTTGATGGCGAAAGAAGGGTTTTGGACCGAGAAGGATGTGAAGTTCACTGCGGCTTGGCTTGAAGATCTGCTTGCTGTTGGGTATGTTCAGCCAAGGCTGAAGGCCATAAAACTGGATCAGCTGAGACCAACCACCATTGGTCATGCAGATAAGAAAGAATTTGTTCCTCAGAAACTACCTTCTGTGCATCTTGCAGTTAAGGAATCAGAAACAGTGAATTATGAGATTGGGAATCTAATTCGCTGGAGAAAGTTTTTTGGCAATGTTGTTGTGATCATGTTTGTCAGCGGGCCTGTGGAGCGAACTGCATTAGAGTGGAAATTACTTTATGGTAGGGTGTTCAAAACTGTGGTCATATTGTCCGACAGTGCTAAAGCAGATTTAGCTGTGGAGCAAGCCACACTGGACCAAGTATACAAGTTGTTCTTCAGGAAGTGCTGCCAGGTTAATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
STELLO

Protein Analysis

577

Amino Acids

66.0

Weight (kDa)

8.6

Isoelectric Point (pI)

27.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STELLO PF03385 353 - 460 2.7e-08 STELLO glycosyltransferases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 549
AccB1I GGYRCC 2 cut(s) 549, 973
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 1692
AccIII TCCGGA 1 cut(s) 375
AciI CCGC 5 cut(s) 16, 162, 745, 1328, 1566
AclWI GGATC 5 cut(s) 232, 350, 363, 398, 1401
AcsI RAATTY 3 cut(s) 421, 982, 1436
AcuI CTGAAG 2 cut(s) 1397, 1690
AfaI GTAC 4 cut(s) 551, 689, 1048, 1137
AfiI CCNNNNNNNGG 1 cut(s) 382
AjnI CCWGG 1 cut(s) 1719
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AloI GAACNNNNNNTCC 2 cut(s) 1304, 1336
AluBI AGCT 5 cut(s) 458, 485, 490, 1399, 1664
AluI AGCT 5 cut(s) 458, 485, 490, 1399, 1664
Alw26I GTCTC 3 cut(s) 349, 531, 1396
AlwI GGATC 5 cut(s) 232, 350, 363, 398, 1401
Aor13HI TCCGGA 1 cut(s) 375
AoxI GGCC 3 cut(s) 755, 1380, 1568
ApeKI GCWGC 2 cut(s) 742, 1716
ApoI RAATTY 3 cut(s) 421, 982, 1436
ArsI GACNNNNNNTTYG 4 cut(s) 75, 107, 1614, 1646
Asp700I GAANNNNTTC 1 cut(s) 1440
Asp718I GGTACC 1 cut(s) 549
AspS9I GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
AsuHPI GGTGA 5 cut(s) 145, 313, 617, 632, 797
AsuII TTCGAA 2 cut(s) 425, 1007
AvaII GGWCC 4 cut(s) 7, 478, 1302, 1684
BaeGI GKGCMC 1 cut(s) 1084
BamHI GGATCC 1 cut(s) 355
BanI GGYRCC 2 cut(s) 549, 973
BarI GAAGNNNNNNTAC 2 cut(s) 1039, 1071
BbsI GAAGAC 2 cut(s) 85, 434
BbvI GCAGC 2 cut(s) 754, 1703
BccI CCATC 6 cut(s) 287, 327, 370, 611, 964, 1276
BciT130I CCWGG 1 cut(s) 1721
BclI TGATCA 1 cut(s) 1551
BcoDI GTCTC 3 cut(s) 349, 531, 1396
BfaI CTAG 3 cut(s) 146, 759, 894
BglII AGATCT 2 cut(s) 1232, 1342
BisI GCNGC 4 cut(s) 162, 743, 1329, 1717
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 4 cut(s) 163, 744, 1330, 1718
Bme1390I CCNGG 1 cut(s) 1721
Bme18I GGWCC 4 cut(s) 7, 478, 1302, 1684
BmgT120I GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
BmiI GGNNCC 4 cut(s) 357, 446, 551, 975
BmrFI CCNGG 1 cut(s) 1721
BmsI GCATC 3 cut(s) 580, 1017, 1474
BpiI GAAGAC 2 cut(s) 85, 434
BpmI CTGGAG 2 cut(s) 512, 1543
Bpu1102I GCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 2 cut(s) 425, 1007
BpuEI CTTGAG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 621
BsaI GGTCTC 2 cut(s) 349, 1396
BsaJI CCNNGG 1 cut(s) 1370
BsaWI WCCGGW 2 cut(s) 375, 865
BsaXI ACNNNNNCTCC 6 cut(s) 176, 206, 260, 290, 1222, 1252
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 3 cut(s) 387, 1395, 1686
Bse3DI GCAATG 2 cut(s) 156, 1546
Bse8I GATNNNNATC 1 cut(s) 621
BseAI TCCGGA 1 cut(s) 375
BseBI CCWGG 1 cut(s) 1721
BseDI CCNNGG 1 cut(s) 1370
BseGI GGATG 3 cut(s) 279, 874, 1318
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 2 cut(s) 156, 1546
BseMII CTCAG 3 cut(s) 339, 1391, 1460
BseNI ACTGG 3 cut(s) 387, 1395, 1686
BseSI GKGCMC 1 cut(s) 1084
BseXI GCAGC 2 cut(s) 754, 1703
BshFI GGCC 3 cut(s) 757, 1382, 1570
BshNI GGYRCC 2 cut(s) 549, 973
BsiSI CCGG 2 cut(s) 376, 866
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 3 cut(s) 349, 531, 1396
BsmI GAATGC 2 cut(s) 834, 1015
BsnI GGCC 3 cut(s) 757, 1382, 1570
Bso31I GGTCTC 2 cut(s) 349, 1396
Bsp119I TTCGAA 2 cut(s) 425, 1007
Bsp1286I GDGCHC 1 cut(s) 1084
Bsp13I TCCGGA 1 cut(s) 375
Bsp1407I TGTACA 1 cut(s) 1135
Bsp1720I GCTNAGC 1 cut(s) 486
BspACI CCGC 5 cut(s) 16, 162, 745, 1328, 1566
BspANI GGCC 3 cut(s) 757, 1382, 1570
BspCNI CTCAG 3 cut(s) 338, 1392, 1459
BspEI TCCGGA 1 cut(s) 375
BspHI TCATGA 1 cut(s) 796
BspLI GGNNCC 4 cut(s) 357, 446, 551, 975
BspPI GGATC 5 cut(s) 232, 350, 363, 398, 1401
BspT104I TTCGAA 2 cut(s) 425, 1007
BspT107I GGYRCC 2 cut(s) 549, 973
BspTNI GGTCTC 2 cut(s) 349, 1396
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 2 cut(s) 156, 1546
BsrGI TGTACA 1 cut(s) 1135
BsrI ACTGG 3 cut(s) 387, 1395, 1686
BssECI CCNNGG 1 cut(s) 1370
BssNAI GTATAC 1 cut(s) 1693
BssT1I CCWWGG 1 cut(s) 1370
Bst1107I GTATAC 1 cut(s) 1693
Bst2UI CCWGG 1 cut(s) 1721
Bst4CI ACNGT 8 cut(s) 651, 692, 715, 1092, 1135, 1492, 1627, 1646
Bst6I CTCTTC 5 cut(s) 125, 173, 533, 795, 1170
BstAUI TGTACA 1 cut(s) 1135
BstBI TTCGAA 2 cut(s) 425, 1007
BstC8I GCNNGC 5 cut(s) 401, 939, 1350, 1568, 1674
BstDEI CTNAG 5 cut(s) 325, 486, 533, 1400, 1446
BstF5I GGATG 3 cut(s) 279, 874, 1318
BstMAI GTCTC 3 cut(s) 349, 531, 1396
BstMWI GCNNNNNNNGC 3 cut(s) 1019, 1576, 1661
BstNI CCWGG 1 cut(s) 1721
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 1 cut(s) 1719
BstSLI GKGCMC 1 cut(s) 1084
BstV1I GCAGC 2 cut(s) 754, 1703
BstV2I GAAGAC 2 cut(s) 85, 434
BstX2I RGATCY 4 cut(s) 237, 355, 1232, 1342
BstXI CCANNNNNNTGG 2 cut(s) 441, 1390
BstYI RGATCY 4 cut(s) 237, 355, 1232, 1342
BstZ17I GTATAC 1 cut(s) 1693
BsuRI GGCC 3 cut(s) 757, 1382, 1570
BtsCI GGATG 3 cut(s) 279, 874, 1318
BtsI GCAGTG 1 cut(s) 1323
BtsIMutI CAGTG 5 cut(s) 697, 1323, 1497, 1651, 1679
Cac8I GCNNGC 5 cut(s) 401, 939, 1350, 1568, 1674
CciI TCATGA 1 cut(s) 796
Cfr13I GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
Csp6I GTAC 4 cut(s) 550, 688, 1047, 1136
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 7 cut(s) 569, 797, 938, 1112, 1190, 1421, 1555
CviQI GTAC 4 cut(s) 550, 688, 1047, 1136
DdeI CTNAG 5 cut(s) 325, 486, 533, 1400, 1446
Eam1104I CTCTTC 5 cut(s) 125, 173, 533, 795, 1170
EarI CTCTTC 5 cut(s) 125, 173, 533, 795, 1170
Eco130I CCWWGG 1 cut(s) 1370
Eco31I GGTCTC 2 cut(s) 349, 1396
Eco32I GATATC 1 cut(s) 852
Eco47I GGWCC 4 cut(s) 7, 478, 1302, 1684
Eco57I CTGAAG 2 cut(s) 1397, 1690
EcoRI GAATTC 2 cut(s) 421, 982
EcoRII CCWGG 1 cut(s) 1719
EcoRV GATATC 1 cut(s) 852
EcoT14I CCWWGG 1 cut(s) 1370
EcoT22I ATGCAT 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 1370
FaeI CATG 7 cut(s) 572, 800, 941, 1115, 1193, 1424, 1558
FalI AAGNNNNNCTT 4 cut(s) 1332, 1364, 1688, 1720
FatI CATG 7 cut(s) 568, 796, 937, 1111, 1189, 1420, 1554
FauI CCCGC 1 cut(s) 1559
FbaI TGATCA 1 cut(s) 1551
FblI GTMKAC 1 cut(s) 1692
Fnu4HI GCNGC 4 cut(s) 162, 743, 1329, 1717
FokI GGATG 3 cut(s) 266, 881, 1325
Fsp4HI GCNGC 4 cut(s) 162, 743, 1329, 1717
FspBI CTAG 3 cut(s) 146, 759, 894
GluI GCNGC 4 cut(s) 162, 743, 1329, 1717
GsuI CTGGAG 2 cut(s) 512, 1543
HaeIII GGCC 3 cut(s) 757, 1382, 1570
HapII CCGG 2 cut(s) 376, 866
Hin1II CATG 7 cut(s) 572, 800, 941, 1115, 1193, 1424, 1558
HinfI GANTC 9 cut(s) 191, 264, 368, 524, 721, 875, 1260, 1481, 1510
HpaII CCGG 2 cut(s) 376, 866
HphI GGTGA 5 cut(s) 145, 313, 617, 632, 797
Hpy166II GTNNAC 2 cut(s) 1323, 1693
Hpy188I TCNGA 9 cut(s) 295, 328, 355, 367, 910, 1060, 1449, 1486, 1642
Hpy188III TCNNGA 5 cut(s) 124, 376, 388, 797, 1708
Hpy8I GTNNAC 2 cut(s) 1323, 1693
HpyAV CCTTC 9 cut(s) 83, 121, 160, 214, 1174, 1286, 1303, 1372, 1467
HpyCH4III ACNGT 8 cut(s) 651, 692, 715, 1092, 1135, 1492, 1627, 1646
HpyCH4V TGCA 9 cut(s) 413, 670, 685, 832, 1013, 1424, 1465, 1472, 1586
HpyF10VI GCNNNNNNNGC 3 cut(s) 1019, 1576, 1661
HpyF3I CTNAG 5 cut(s) 325, 486, 533, 1400, 1446
Hsp92II CATG 7 cut(s) 572, 800, 941, 1115, 1193, 1424, 1558
Kpn2I TCCGGA 1 cut(s) 375
KpnI GGTACC 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 1551
LmnI GCTCC 6 cut(s) 378, 444, 455, 946, 1576, 1669
Lsp1109I GCAGC 2 cut(s) 754, 1703
LweI GCATC 3 cut(s) 580, 1017, 1474
MaeI CTAG 3 cut(s) 146, 759, 894
MbiI CCGCTC 1 cut(s) 18
MflI RGATCY 4 cut(s) 237, 355, 1232, 1342
MhlI GDGCHC 1 cut(s) 1084
MlyI GAGTC 3 cut(s) 185, 362, 533
MmeI TCCRAC 4 cut(s) 330, 888, 1208, 1665
Mph1103I ATGCAT 1 cut(s) 1015
MroI TCCGGA 1 cut(s) 375
MroXI GAANNNNTTC 1 cut(s) 1440
MseI TTAA 5 cut(s) 990, 1212, 1271, 1476, 1725
MslI CAYNNNNRTG 4 cut(s) 1008, 1143, 1194, 1591
MspA1I CMGCKG 3 cut(s) 745, 1399, 1566
MspI CCGG 2 cut(s) 376, 866
MspR9I CCNGG 1 cut(s) 1721
Mva1269I GAATGC 2 cut(s) 834, 1015
MvaI CCWGG 1 cut(s) 1721
MwoI GCNNNNNNNGC 3 cut(s) 1019, 1576, 1661
NlaIII CATG 7 cut(s) 572, 800, 941, 1115, 1193, 1424, 1558
NlaIV GGNNCC 4 cut(s) 357, 446, 551, 975
NsiI ATGCAT 1 cut(s) 1015
NspI RCATGY 1 cut(s) 941
NspV TTCGAA 2 cut(s) 425, 1007
PaeI GCATGC 1 cut(s) 941
PagI TCATGA 1 cut(s) 796
PctI GAATGC 2 cut(s) 834, 1015
PdmI GAANNNNTTC 1 cut(s) 1440
PfeI GAWTC 6 cut(s) 264, 721, 875, 1260, 1481, 1510
PkrI GCNGC 4 cut(s) 163, 744, 1330, 1718
PleI GAGTC 3 cut(s) 185, 362, 532
PpsI GAGTC 3 cut(s) 185, 362, 532
Psp6I CCWGG 1 cut(s) 1719
PspGI CCWGG 1 cut(s) 1719
PspN4I GGNNCC 4 cut(s) 357, 446, 551, 975
PspPI GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
PsuI RGATCY 4 cut(s) 237, 355, 1232, 1342
PvuII CAGCTG 1 cut(s) 1399
RsaI GTAC 4 cut(s) 551, 689, 1048, 1137
RsaNI GTAC 4 cut(s) 550, 688, 1047, 1136
RseI CAYNNNNRTG 4 cut(s) 1008, 1143, 1194, 1591
SaqAI TTAA 5 cut(s) 990, 1212, 1271, 1476, 1725
SatI GCNGC 4 cut(s) 162, 743, 1329, 1717
Sau96I GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
SchI GAGTC 3 cut(s) 185, 362, 533
ScrFI CCNGG 1 cut(s) 1721
SduI GDGCHC 1 cut(s) 1084
SfaNI GCATC 3 cut(s) 580, 1017, 1474
SfuI TTCGAA 2 cut(s) 425, 1007
SinI GGWCC 4 cut(s) 7, 478, 1302, 1684
SmiMI CAYNNNNRTG 4 cut(s) 1008, 1143, 1194, 1591
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SphI GCATGC 1 cut(s) 941
SsiI CCGC 5 cut(s) 16, 162, 745, 1328, 1566
SspMI CTAG 3 cut(s) 146, 759, 894
StyD4I CCNGG 1 cut(s) 1719
StyI CCWWGG 1 cut(s) 1370
TaaI ACNGT 8 cut(s) 651, 692, 715, 1092, 1135, 1492, 1627, 1646
TaqI TCGA 4 cut(s) 425, 588, 1007, 1204
TaqII GACCGA 1 cut(s) 1319
TatI WGTACW 3 cut(s) 687, 1046, 1135
TauI GCSGC 2 cut(s) 164, 1331
TfiI GAWTC 6 cut(s) 264, 721, 875, 1260, 1481, 1510
Tru1I TTAA 5 cut(s) 990, 1212, 1271, 1476, 1725
Tru9I TTAA 5 cut(s) 990, 1212, 1271, 1476, 1725
TscAI CASTG 5 cut(s) 697, 1330, 1497, 1651, 1686
TseI GCWGC 2 cut(s) 742, 1716
TspDTI ATGAA 5 cut(s) 711, 722, 813, 992, 1178
TspRI CASTG 5 cut(s) 697, 1330, 1497, 1651, 1686
VpaK11BI GGWCC 4 cut(s) 7, 478, 1302, 1684
XapI RAATTY 3 cut(s) 421, 982, 1436
XceI RCATGY 1 cut(s) 941
XmiI GTMKAC 1 cut(s) 1692
XmnI GAANNNNTTC 1 cut(s) 1440
XspI CTAG 3 cut(s) 146, 759, 894
Zsp2I ATGCAT 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.