Rh1AG027100

STELLO glycosyltransferases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002600
Physical Location & Seq
Forward (+)
4893529 .. 4897257
3729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG027100.1

Sequence Viewer

Length: 1701 bp
ATGTTGGTCCAAGACCGCTCAATCTCAAAACCCACCTCCAAACCCCACCAACTCTTTCTCAACAATCACTTCCTTCAACCCAAAACCTTTGTCTTCCCCAAATGGCTCTCCTTCAACCTCTTCAAGATCGCCACCATTTCAGTCCTAGCCTTCACCATTGCCGCCCTCTTCTTCCTCTACACCAACAATGACTCCCCCACCACCTTCCTCTGTTTCAACTCCAAATCCCACTCCAAGATCCCCACACCCATTGAACTCCCCAGAATCAACTTCAACTCCATCCCACCCATTTCAGATAAGTCCTCCAACTTCGCTTCTTTCACCTCAGACAGATGGATTGTGGTCTCTGTTTCGGATCCTCCATCGGACTCGCTCCGGAAACTGGTCAGGATCAAGGGCTGGCAAGTCCTTGCAATAGGGAATTCGAAGACCCCATTGGATTGGAGCCTCAAGGGAGCTATATACTTGTCAATGGAGGACCAAGCTAAGCTGGAGTTTCGTGTTTTGGAGTATCTTCCTTATGAGTCTCATCTGAGGAAGAGTGTTGGGTACCTTTTCGCCATTCAACACGGGGCGAAAATGATATTCGATGCTGATGATCGTGGCGAAGTGGTTGATGGTGACCTTGGGAAGCACTTTGATTTGAAACTGTCAAAGGTAAGTGTAATGCAGGAGAGGATTTTGCAGTACAGTGATGAAAACCGCAATAGAACAGTTGTGAATCCATACATTCATTTCGGGCAGCGGTCAGTTTGGCCTAGAGGATTGCCTTTGGAGAATGTAGGTGAAATTGGGCATGAAGAGTTCTATGGTGAAGTGTTTGGAGGAATGCAGTACATTCAGCAGGGGATATCCAATGGCTTACCGGATGTGGATTCGGTTTTTTACCTCACTAGGAGGTCAGGGTCGGAAGCATTGGATATAAAGTTTGATGAGCATGCTCCAAAAGTTGCCTTACCACAAGGTATGATGGTGCCATTGAATTCTTTTAATACATTGTTTCATTTGAATGCATTTTGGGCTTTGATGCTTCCTGTTTCGGTTAGTACAATGGCTTCTGATGTATTGAGGGGTTATTGGGCACAAAGACTGTTGTGGGAAATTGGTGGTCATGTTGTTGTTTATCCTCCTACTGTACATAGATATGATAATGTTGAAGCATATCCATTTACAGAAGAGAAGGATTTTCATGTAAATGTGGGTCGATTGATCAAGTTTTTAGTTAGTTGGAGATCTGGTAAGGTCAAGTTGTTTGACAGAATCTTGGAATTGAGTTTTTTGATGGCGAAAGAAGGGTTTTGGACCGAGAAGGATGTGAGGTTCACTGCTGCTTGGCTTGAAGATCTGCTTGCTGTTGGCTACGTTCAGCCAAGGCTGAAGGCCATAAAACTGGATCAGCTGAGACCAACCACCATTGGTCATGCAGATAGGAAGGAATTTGTTCCTCAAAAACTACCTTCCGTGCATCTTGCAGTTAGGGAATCAGAAACAGTGAATTATGAGATTGGGAATCTAATTCGCTGGAGAAAGTTTTTTGGCAATGTTGTTGTGATCATGTTTGTCAGCGGGCCTGTGGAGCGAACTGCATTAGAGTGGAAATTACTTTATGGTAGGGTGTTCAAAACTGTGGTGATATTGTCCAACAGTGCTAAAGCAGATTTAGCTGTGGAGCAAGCCACACTGGACCAAGTATACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
STELLO

Protein Analysis

566

Amino Acids

64.72

Weight (kDa)

8.97

Isoelectric Point (pI)

28.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STELLO PF03385 353 - 460 4.7e-08 STELLO glycosyltransferases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 549
AccB1I GGYRCC 2 cut(s) 549, 973
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 1692
AccIII TCCGGA 1 cut(s) 375
AciI CCGC 5 cut(s) 16, 162, 703, 745, 1566
AclWI GGATC 5 cut(s) 232, 350, 363, 398, 1401
AcsI RAATTY 3 cut(s) 421, 982, 1436
AcuI CTGAAG 1 cut(s) 1397
AfaI GTAC 5 cut(s) 551, 689, 836, 1048, 1137
AfiI CCNNNNNNNGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AloI GAACNNNNNNTCC 2 cut(s) 1304, 1336
AluBI AGCT 5 cut(s) 458, 485, 490, 1399, 1664
AluI AGCT 5 cut(s) 458, 485, 490, 1399, 1664
Alw26I GTCTC 3 cut(s) 349, 531, 1396
AlwI GGATC 5 cut(s) 232, 350, 363, 398, 1401
Aor13HI TCCGGA 1 cut(s) 375
AoxI GGCC 3 cut(s) 755, 1380, 1568
ApeKI GCWGC 2 cut(s) 742, 1328
ApoI RAATTY 3 cut(s) 421, 982, 1436
ArsI GACNNNNNNTTYG 2 cut(s) 75, 107
Asp700I GAANNNNTTC 1 cut(s) 1440
Asp718I GGTACC 1 cut(s) 549
AspS9I GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
AsuHPI GGTGA 6 cut(s) 145, 313, 632, 797, 824, 1642
AsuII TTCGAA 1 cut(s) 425
AvaII GGWCC 4 cut(s) 7, 478, 1302, 1684
BaeGI GKGCMC 1 cut(s) 1084
BamHI GGATCC 1 cut(s) 355
BanI GGYRCC 2 cut(s) 549, 973
BarI GAAGNNNNNNTAC 2 cut(s) 1039, 1071
BbsI GAAGAC 2 cut(s) 85, 434
BbvI GCAGC 2 cut(s) 754, 1315
BccI CCATC 6 cut(s) 287, 327, 370, 611, 964, 1276
BclI TGATCA 2 cut(s) 1209, 1551
BcoDI GTCTC 3 cut(s) 349, 531, 1396
BfaI CTAG 3 cut(s) 146, 759, 894
BglII AGATCT 2 cut(s) 1232, 1342
BisI GCNGC 3 cut(s) 162, 743, 1329
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 3 cut(s) 163, 744, 1330
Bme18I GGWCC 4 cut(s) 7, 478, 1302, 1684
BmgT120I GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
BmiI GGNNCC 4 cut(s) 357, 446, 551, 975
BmsI GCATC 3 cut(s) 580, 1017, 1474
BpiI GAAGAC 2 cut(s) 85, 434
BpmI CTGGAG 2 cut(s) 512, 1543
Bpu1102I GCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 434
BsaI GGTCTC 2 cut(s) 349, 1396
BsaJI CCNNGG 2 cut(s) 625, 1370
BsaWI WCCGGW 2 cut(s) 375, 865
BsaXI ACNNNNNCTCC 6 cut(s) 176, 206, 260, 290, 1222, 1252
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 3 cut(s) 387, 1395, 1686
Bse3DI GCAATG 2 cut(s) 156, 1546
BseAI TCCGGA 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 625, 1370
BseGI GGATG 3 cut(s) 279, 874, 1318
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 2 cut(s) 156, 1546
BseMII CTCAG 3 cut(s) 339, 524, 1391
BseNI ACTGG 3 cut(s) 387, 1395, 1686
BseSI GKGCMC 1 cut(s) 1084
BseXI GCAGC 2 cut(s) 754, 1315
BshFI GGCC 3 cut(s) 757, 1382, 1570
BshNI GGYRCC 2 cut(s) 549, 973
BsiSI CCGG 2 cut(s) 376, 866
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 3 cut(s) 349, 531, 1396
BsmI GAATGC 2 cut(s) 834, 1015
BsnI GGCC 3 cut(s) 757, 1382, 1570
Bso31I GGTCTC 2 cut(s) 349, 1396
Bsp119I TTCGAA 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 1084
Bsp13I TCCGGA 1 cut(s) 375
Bsp1407I TGTACA 1 cut(s) 1135
Bsp1720I GCTNAGC 1 cut(s) 486
BspACI CCGC 5 cut(s) 16, 162, 703, 745, 1566
BspANI GGCC 3 cut(s) 757, 1382, 1570
BspCNI CTCAG 3 cut(s) 338, 525, 1392
BspEI TCCGGA 1 cut(s) 375
BspLI GGNNCC 4 cut(s) 357, 446, 551, 975
BspPI GGATC 5 cut(s) 232, 350, 363, 398, 1401
BspT104I TTCGAA 1 cut(s) 425
BspT107I GGYRCC 2 cut(s) 549, 973
BspTNI GGTCTC 2 cut(s) 349, 1396
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 2 cut(s) 156, 1546
BsrGI TGTACA 1 cut(s) 1135
BsrI ACTGG 3 cut(s) 387, 1395, 1686
BssECI CCNNGG 2 cut(s) 625, 1370
BssNAI GTATAC 1 cut(s) 1693
BssT1I CCWWGG 2 cut(s) 625, 1370
Bst1107I GTATAC 1 cut(s) 1693
Bst4CI ACNGT 8 cut(s) 651, 692, 715, 1092, 1135, 1492, 1627, 1646
Bst6I CTCTTC 5 cut(s) 125, 173, 533, 795, 1170
BstAUI TGTACA 1 cut(s) 1135
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 5 cut(s) 401, 939, 1350, 1568, 1674
BstDEI CTNAG 4 cut(s) 325, 486, 533, 1400
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 3 cut(s) 279, 874, 1318
BstMAI GTCTC 3 cut(s) 349, 531, 1396
BstMWI GCNNNNNNNGC 3 cut(s) 1019, 1576, 1661
BstNSI RCATGY 1 cut(s) 941
BstPI GGTNACC 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 1084
BstV1I GCAGC 2 cut(s) 754, 1315
BstV2I GAAGAC 2 cut(s) 85, 434
BstX2I RGATCY 4 cut(s) 237, 355, 1232, 1342
BstXI CCANNNNNNTGG 2 cut(s) 441, 1390
BstYI RGATCY 4 cut(s) 237, 355, 1232, 1342
BstZ17I GTATAC 1 cut(s) 1693
BsuRI GGCC 3 cut(s) 757, 1382, 1570
BtsCI GGATG 3 cut(s) 279, 874, 1318
BtsI GCAGTG 1 cut(s) 1323
BtsIMutI CAGTG 5 cut(s) 697, 1323, 1497, 1651, 1679
Cac8I GCNNGC 5 cut(s) 401, 939, 1350, 1568, 1674
Cfr13I GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
Csp6I GTAC 5 cut(s) 550, 688, 835, 1047, 1136
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 6 cut(s) 797, 938, 1112, 1190, 1421, 1555
CviQI GTAC 5 cut(s) 550, 688, 835, 1047, 1136
DdeI CTNAG 4 cut(s) 325, 486, 533, 1400
Eam1104I CTCTTC 5 cut(s) 125, 173, 533, 795, 1170
EarI CTCTTC 5 cut(s) 125, 173, 533, 795, 1170
Eco130I CCWWGG 2 cut(s) 625, 1370
Eco31I GGTCTC 2 cut(s) 349, 1396
Eco32I GATATC 1 cut(s) 852
Eco47I GGWCC 4 cut(s) 7, 478, 1302, 1684
Eco57I CTGAAG 1 cut(s) 1397
Eco91I GGTNACC 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 620
EcoRI GAATTC 2 cut(s) 421, 982
EcoRV GATATC 1 cut(s) 852
EcoT14I CCWWGG 2 cut(s) 625, 1370
EcoT22I ATGCAT 1 cut(s) 1015
ErhI CCWWGG 2 cut(s) 625, 1370
FaeI CATG 6 cut(s) 800, 941, 1115, 1193, 1424, 1558
FalI AAGNNNNNCTT 2 cut(s) 1332, 1364
FatI CATG 6 cut(s) 796, 937, 1111, 1189, 1420, 1554
FauI CCCGC 1 cut(s) 1559
FbaI TGATCA 2 cut(s) 1209, 1551
FblI GTMKAC 1 cut(s) 1692
Fnu4HI GCNGC 3 cut(s) 162, 743, 1329
FokI GGATG 3 cut(s) 266, 881, 1325
Fsp4HI GCNGC 3 cut(s) 162, 743, 1329
FspBI CTAG 3 cut(s) 146, 759, 894
GluI GCNGC 3 cut(s) 162, 743, 1329
GsuI CTGGAG 2 cut(s) 512, 1543
HaeIII GGCC 3 cut(s) 757, 1382, 1570
HapII CCGG 2 cut(s) 376, 866
Hin1II CATG 6 cut(s) 800, 941, 1115, 1193, 1424, 1558
HinfI GANTC 9 cut(s) 191, 264, 368, 524, 721, 875, 1260, 1481, 1510
HpaII CCGG 2 cut(s) 376, 866
HphI GGTGA 6 cut(s) 145, 313, 632, 797, 824, 1642
Hpy166II GTNNAC 2 cut(s) 1323, 1693
Hpy188I TCNGA 8 cut(s) 295, 328, 355, 367, 534, 910, 1060, 1486
Hpy188III TCNNGA 3 cut(s) 124, 376, 388
Hpy8I GTNNAC 2 cut(s) 1323, 1693
HpyCH4III ACNGT 8 cut(s) 651, 692, 715, 1092, 1135, 1492, 1627, 1646
HpyCH4IV ACGT 1 cut(s) 1362
HpyCH4V TGCA 9 cut(s) 413, 670, 685, 832, 1013, 1424, 1465, 1472, 1586
HpyF10VI GCNNNNNNNGC 3 cut(s) 1019, 1576, 1661
HpyF3I CTNAG 4 cut(s) 325, 486, 533, 1400
HpySE526I ACGT 1 cut(s) 1362
Hsp92II CATG 6 cut(s) 800, 941, 1115, 1193, 1424, 1558
Kpn2I TCCGGA 1 cut(s) 375
KpnI GGTACC 1 cut(s) 553
Ksp22I TGATCA 2 cut(s) 1209, 1551
LmnI GCTCC 6 cut(s) 378, 444, 455, 946, 1576, 1669
Lsp1109I GCAGC 2 cut(s) 754, 1315
LweI GCATC 3 cut(s) 580, 1017, 1474
MaeI CTAG 3 cut(s) 146, 759, 894
MaeII ACGT 1 cut(s) 1362
MaeIII GTNAC 1 cut(s) 620
MbiI CCGCTC 1 cut(s) 18
MflI RGATCY 4 cut(s) 237, 355, 1232, 1342
MhlI GDGCHC 1 cut(s) 1084
MluCI AATT 9 cut(s) 421, 789, 982, 1101, 1268, 1436, 1495, 1515, 1598
MlyI GAGTC 3 cut(s) 185, 362, 533
MmeI TCCRAC 4 cut(s) 330, 888, 1208, 1665
Mph1103I ATGCAT 1 cut(s) 1015
MroI TCCGGA 1 cut(s) 375
MroXI GAANNNNTTC 1 cut(s) 1440
MseI TTAA 1 cut(s) 990
MslI CAYNNNNRTG 4 cut(s) 1008, 1143, 1194, 1591
MspA1I CMGCKG 3 cut(s) 745, 1399, 1566
MspI CCGG 2 cut(s) 376, 866
Mva1269I GAATGC 2 cut(s) 834, 1015
MwoI GCNNNNNNNGC 3 cut(s) 1019, 1576, 1661
NlaIII CATG 6 cut(s) 800, 941, 1115, 1193, 1424, 1558
NlaIV GGNNCC 4 cut(s) 357, 446, 551, 975
NmuCI GTSAC 1 cut(s) 620
NsiI ATGCAT 1 cut(s) 1015
NspI RCATGY 1 cut(s) 941
NspV TTCGAA 1 cut(s) 425
PaeI GCATGC 1 cut(s) 941
PctI GAATGC 2 cut(s) 834, 1015
PdmI GAANNNNTTC 1 cut(s) 1440
PfeI GAWTC 6 cut(s) 264, 721, 875, 1260, 1481, 1510
PkrI GCNGC 3 cut(s) 163, 744, 1330
PleI GAGTC 3 cut(s) 185, 362, 532
PpsI GAGTC 3 cut(s) 185, 362, 532
PspEI GGTNACC 1 cut(s) 620
PspN4I GGNNCC 4 cut(s) 357, 446, 551, 975
PspPI GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
PsuI RGATCY 4 cut(s) 237, 355, 1232, 1342
PvuII CAGCTG 1 cut(s) 1399
RsaI GTAC 5 cut(s) 551, 689, 836, 1048, 1137
RsaNI GTAC 5 cut(s) 550, 688, 835, 1047, 1136
RseI CAYNNNNRTG 4 cut(s) 1008, 1143, 1194, 1591
SaqAI TTAA 1 cut(s) 990
SatI GCNGC 3 cut(s) 162, 743, 1329
Sau96I GGNCC 5 cut(s) 7, 478, 1302, 1568, 1684
SchI GAGTC 3 cut(s) 185, 362, 533
SduI GDGCHC 1 cut(s) 1084
SfaNI GCATC 3 cut(s) 580, 1017, 1474
SfuI TTCGAA 1 cut(s) 425
SinI GGWCC 4 cut(s) 7, 478, 1302, 1684
SmiMI CAYNNNNRTG 4 cut(s) 1008, 1143, 1194, 1591
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SphI GCATGC 1 cut(s) 941
Sse9I AATT 9 cut(s) 421, 789, 982, 1101, 1268, 1436, 1495, 1515, 1598
SsiI CCGC 5 cut(s) 16, 162, 703, 745, 1566
SspMI CTAG 3 cut(s) 146, 759, 894
StyI CCWWGG 2 cut(s) 625, 1370
TaaI ACNGT 8 cut(s) 651, 692, 715, 1092, 1135, 1492, 1627, 1646
TaiI ACGT 1 cut(s) 1365
TaqI TCGA 3 cut(s) 425, 588, 1204
TaqII GACCGA 1 cut(s) 1319
TasI AATT 9 cut(s) 421, 789, 982, 1101, 1268, 1436, 1495, 1515, 1598
TatI WGTACW 4 cut(s) 687, 834, 1046, 1135
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 6 cut(s) 264, 721, 875, 1260, 1481, 1510
Tru1I TTAA 1 cut(s) 990
Tru9I TTAA 1 cut(s) 990
TscAI CASTG 5 cut(s) 697, 1330, 1497, 1651, 1686
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 2 cut(s) 742, 1328
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 5 cut(s) 711, 722, 813, 992, 1178
TspGWI ACGGA 1 cut(s) 1450
TspRI CASTG 5 cut(s) 697, 1330, 1497, 1651, 1686
VpaK11BI GGWCC 4 cut(s) 7, 478, 1302, 1684
XapI RAATTY 3 cut(s) 421, 982, 1436
XceI RCATGY 1 cut(s) 941
XmiI GTMKAC 1 cut(s) 1692
XmnI GAANNNNTTC 1 cut(s) 1440
XspI CTAG 3 cut(s) 146, 759, 894
Zsp2I ATGCAT 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.