Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232473.1

Orthogroup ID

OG0002600

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 700

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232473.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

tcgctccggaaactggtcaggatcaagggctggcaagtccttgcaatagggaattccaagaccccattggattggagcctcaagggagctatatacttgtcaatggaggaccaagctaagctggagtttcgtgttttggagtatcttccttatgagtctcatctgaggaagagtgttggctaccttttcgccattcaacacggggcgaaaatgatattcgatgctgatgatcgtggtgaagtggttgatggtgaccttgggaagcactttgatttgaaactgtcaaaggtaagtgtaatgcaggagaggattttgcagtacagtgatcaaaaccccaatagaacagttgtgaatccatacattcatttcgggcagcggtcagtttggcctagaggattgcctttggagaatgtaggtgaaattgagcatgaagagttctatggggaagtgtttggaggaatgcagtacattcagcaggggatatccaatggcttaccggatgtggattcggttttttacctcactaggaggtcagggtcggaagcattggatataaagtttgatgagcatgctccaaaagttgccttaccacaagtacaatggcttctgatgtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

205

Amino Acids

23.52

Weight (kDa)

5.87

Isoelectric Point (pI)

28.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41770 AT3G57420
fragaria_vesca	FvH4_6g23790 FvH4_6g23790 FvH4_7g01460
malus_domestica	MD07G1018300.v1.1 MD12G1073600.v1.1 MD14G1071900.v1.1
prunus_persica	Prupe.2G020200_v2.0.a1 Prupe.7G061300_v2.0.a1
pyrus_communis	pycom07g01440 pycom12g06360 pycom14g06170
rosa_chinensis	RchiOBHm_Chr1g0317301 RchiOBHm_Chr3g0482321
rosa_laevigata	RLG00000023359 RLG00000029570 RLG00000030608
rosa_multiflora	Rmu_co8232473.1_g000001 Rmu_co8457415.1_g000001 Rmu_sc0000135.1_g000005 Rmu_sc0013869.1_g000004 Rmu_sc0015957.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330510 Rroxscaffold_6G00399430 Rroxscaffold_6G00399450 Rroxscaffold_6G00399930
rosa_rugosa	Rorug01G0015700 Rorug03G0195800 Rorug03G0195800
rosa_samantha	Rh1AG027100 Rh1BG023000 Rh1CG025100 Rh1DG046100 Rh3AG247400 Rh3BG281900 Rh3CG278900 Rh3DG274700
rosa_wichuraiana	Rw1G001870 Rw3G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	6
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	3 cut(s)	320, 467, 597
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	197, 277
AluBI	AGCT	3 cut(s)	89, 116, 121
AluI	AGCT	3 cut(s)	89, 116, 121
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	6
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	1 cut(s)	373
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	3 cut(s)	248, 263, 428
AvaII	GGWCC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	1 cut(s)	588
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	2 cut(s)	390, 525
BisI	GCNGC	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	77
BmsI	GCATC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	2 cut(s)	6, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	385
BshFI	GGCC	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	7, 497
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	388
Bsp13I	TCCGGA	1 cut(s)	6
Bsp143I	GATC	3 cut(s)	21, 229, 325
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	1 cut(s)	156
BspEI	TCCGGA	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	21, 229, 325
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	3 cut(s)	282, 323, 346
Bst6I	CTCTTC	2 cut(s)	164, 426
BstC8I	GCNNGC	2 cut(s)	32, 570
BstDEI	CTNAG	2 cut(s)	117, 164
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	3 cut(s)	24, 232, 328
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	3 cut(s)	21, 229, 325
BstNSI	RCATGY	1 cut(s)	572
BstPI	GGTNACC	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	32, 570
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	319, 466, 596
CviAII	CATG	2 cut(s)	428, 569
CviJI	RGCY	9 cut(s)	30, 78, 89, 116, 121, 180, 388, 492, 604
CviKI_1	RGCY	9 cut(s)	30, 78, 89, 116, 121, 180, 388, 492, 604
CviQI	GTAC	3 cut(s)	319, 466, 596
DdeI	CTNAG	2 cut(s)	117, 164
DpnI	GATC	3 cut(s)	23, 231, 327
DpnII	GATC	3 cut(s)	21, 229, 325
Eam1104I	CTCTTC	2 cut(s)	164, 426
EarI	CTCTTC	2 cut(s)	164, 426
Eco130I	CCWWGG	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	431, 572
FaiI	YATR	8 cut(s)	92, 94, 153, 358, 429, 441, 554, 570
FatI	CATG	2 cut(s)	427, 568
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	374
FspBI	CTAG	2 cut(s)	390, 525
GluI	GCNGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	2 cut(s)	7, 497
Hin1II	CATG	2 cut(s)	431, 572
HinfI	GANTC	3 cut(s)	155, 352, 506
HpaII	CCGG	2 cut(s)	7, 497
HphI	GGTGA	3 cut(s)	248, 263, 428
Hpy188I	TCNGA	3 cut(s)	165, 541, 609
Hpy188III	TCNNGA	2 cut(s)	7, 19
HpyCH4III	ACNGT	3 cut(s)	282, 323, 346
HpyCH4V	TGCA	4 cut(s)	44, 301, 316, 463
HpyF3I	CTNAG	2 cut(s)	117, 164
Hsp92II	CATG	2 cut(s)	431, 572
Kpn2I	TCCGGA	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	21, 229, 325
LmnI	GCTCC	4 cut(s)	9, 75, 86, 577
LpnPI	CCDG	8 cut(s)	4, 16, 20, 107, 287, 461, 510, 519
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	390, 525
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	3 cut(s)	23, 231, 327
MboI	GATC	3 cut(s)	21, 229, 325
MboII	GAAGA	3 cut(s)	137, 181, 443
MluCI	AATT	2 cut(s)	52, 420
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	8 cut(s)	89, 100, 159, 300, 386, 449, 522, 530
MroI	TCCGGA	1 cut(s)	6
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	2 cut(s)	7, 497
Mva1269I	GAATGC	1 cut(s)	465
NdeII	GATC	3 cut(s)	21, 229, 325
NlaIII	CATG	2 cut(s)	431, 572
NlaIV	GGNNCC	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	572
PaeI	GCATGC	1 cut(s)	572
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	352, 506
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	3 cut(s)	320, 467, 597
RsaNI	GTAC	3 cut(s)	319, 466, 596
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	3 cut(s)	21, 229, 325
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	164
SetI	ASST	9 cut(s)	91, 118, 123, 186, 258, 291, 418, 522, 533
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SphI	GCATGC	1 cut(s)	572
Sse9I	AATT	2 cut(s)	52, 420
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	2 cut(s)	390, 525
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	3 cut(s)	282, 323, 346
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	52, 420
TatI	WGTACW	3 cut(s)	318, 465, 595
TfiI	GAWTC	2 cut(s)	352, 506
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	373
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	353, 444
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	2 cut(s)	64, 597
XspI	CTAG	2 cut(s)	390, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.